cxadr (LOC106567957)


Basic Information

Item Value
gene id cxadr
gene name LOC106567957
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 32555056 ~ 32614990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937414.1
GCACCTGCTGAGGCGTAGAGGGATCGGATAGTTTTGATGCTTCGGGAGAGTGCTCTGACAGTCGGAAGCACCGCATAAGTTTATTTTTCACCTGTGTTTTGAAAGAAAATTATTGGAATAGACCGAAAGGAATGGATTTCACGATACCCCACCTCTGCTGTGTATTGATTAGTCTTATCGCAGGTGTAGCCCATGGCCTGGAGATCACGTCCCAGGGACCCACGTCCATAGAGAAGGCCAGCAGTGAGAGTGTCAAGCTGGATTGTCAGTTTTCTCTGGCCCCTGTGGACTCTGGCCCCCTGGACATCGAATGGAGCCTGCTGGCCTCCGACAACCAGAAAGAGGACAAAGTGGTGATCCTGTACTCTGGGGACAGGGCCTATGAGGACTACTACCCTGCAGTGAAGGGGCGGGCCCACTTCAACTCACCTGACCCGAAGAATGGCGACGCTTCCATCAACCTGACTGGTCTGAAGTCCTCAGACACGGGGACCTACCAATGCAAGGTGAAGAAGGCCCCGGGCATCCGCAGCAGAAAGATGCTACTGACCGTCATGGTGAGGCCGTCCAAGCCCAGATGCTCTACTGAAGGCCCCACCCAGGAGGGTAAGGACGTGGTCCTGAGGTGTACGTCCAGTGAGGGGACCAAGCCCCTGCAGTACACCTGGGAGAAGACCAGTGACAGCAAGATTCTGCCTGCCTCAGCTgtgctagACCCTGTGGGAGGCACCATGAATGTAAGGAACGCGTCCATCAGCTCCTCAGGAACCTACCGCTGCACTGCTAAGAACCACGTGGGCATGGAGGAGTGTATTCTACAGCTTGGCATCACTCCCCCACCCAACACTGCTGGTATCATAGCTGGAGCCATCATCGCTGTGCTGCTGGCCCTCATCATCATCGCCATCGTCCTCTTCTGCTGCTGCCGCGCCCGCCACAGGAAGAAGTACGAGAAGGAGATCTCTTACGAGATCAGaGAGGACGTTCCCCCTCCGAAGAGCCGCGTGTCGACGGCTCGCTCTTTCACCAGCGTGGGCAGCCAGCGTTCCTCCCTGGGCTCCATGTCCCCCTCCAACCTGCATGAGTACGCCCTCAAGCCCCAGTATGACAAGATCCCCTCTGTGGAGGAGTATGAGAGACCCCCCAGCCACACACCCCTGCCACCGCCTGTCGCCAGCAAGATAGCCGGCCGTAACCTCAGCCGCATGGGCGGCATCCCCGTCATGATCCCCGCCCAAAACAAGGACGGCTCCATTGtgtaatggagagagagcgaaggagaaagggagggttTGGGACTGGGGGACACTAGCcagagaggaggtgggggggcTGGTCTGGCaactggagagatggaggggtgggacaGGGGGAC

Function

NR:

description
coxsackievirus and adenovirus receptor homolog

GO: NA

KEGG:

id description
K06788 CXADR, CAR; coxsackievirus and adenovirus receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937414.1 True 1375 mRNA 0.58 7 32555056 32614990

Neighbor

gene id symbol gene type direction distance location
btg3 btg3 coding upstream 400 32546918 ~ 32554656 (+)
LOC110537469 LOC106567749 coding upstream 20370 32504245 ~ 32534686 (+)
LOC110537467 LOC106567956 coding upstream 83685 32458471 ~ 32471371 (+)
prdm15 LOC106567952 coding upstream 100243 32438318 ~ 32454813 (+)
LOC110537465 LOC106567954 coding upstream 116975 32416457 ~ 32438081 (+)
LOC110537474 NA coding downstream 886944 33501934 ~ 33513654 (+)
rnft1 LOC106567963 coding downstream 983949 33598939 ~ 33624023 (+)
ptrh2 ptrh2 coding downstream 1167824 33782814 ~ 33784617 (+)
LOC110537484 LOC106567971 coding downstream 1258025 33873015 ~ 33880271 (+)
abr LOC106567975 coding downstream 1519518 34134508 ~ 34360009 (+)
G1060718 NA non-coding upstream 233848 32304204 ~ 32321208 (+)
G1060602 NA non-coding upstream 474710 32061000 ~ 32080346 (+)
G1060555 NA non-coding upstream 575451 31979194 ~ 31979605 (+)
LOC110537456 LOC105010978 non-coding upstream 587600 31961376 ~ 31968942 (+)
G1060932 LOC106567958 non-coding downstream 44702 32659692 ~ 32660196 (+)
G1060957 NA non-coding downstream 83006 32697996 ~ 32699061 (+)
G1060990 NA non-coding downstream 147574 32762564 ~ 32762805 (+)
G1060993 NA non-coding downstream 150824 32765814 ~ 32766072 (+)
G1060994 NA non-coding downstream 162275 32777265 ~ 32777653 (+)
G1060470 NA other upstream 743709 31811062 ~ 31811347 (+)
G1059685 LOC106567926 other upstream 1345699 31207629 ~ 31209357 (+)
G1059091 NA other upstream 1547990 31000227 ~ 31007066 (+)
LOC110537434 NA other upstream 1675945 30848508 ~ 30879117 (+)
G1058787 LOC106567901 other upstream 2038166 30516081 ~ 30516890 (+)
G1062404 NA other downstream 744744 33359734 ~ 33366249 (+)
G1062537 NA other downstream 893329 33508319 ~ 33508863 (+)
G1062648 NA other downstream 1043288 33658278 ~ 33661949 (+)
ubb ubb other downstream 2152034 34766968 ~ 34770882 (+)
LOC110537506 LOC106567992 other downstream 2361302 34964222 ~ 34982028 (+)

Expression


Co-expression Network