Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040477 |
| length | 1555 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 9 |
| gene id | XLOC_020388 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 20169352 ~ 20181597 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-4258 | Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human HMG20B (high mobility group 20B). |
| ensembl_id | ENSDART00000061617 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042130 | lncRNA | upstream | 119083 | 20011796 ~ 20050276 (+) | True | XLOC_020383 |
| TCONS_00041895 | lncRNA | upstream | 329767 | 19839275 ~ 19839592 (+) | True | XLOC_020382 |
| TCONS_00042128 | lncRNA | upstream | 1573101 | 18560343 ~ 18596258 (+) | False | XLOC_020351 |
| TCONS_00042127 | lncRNA | upstream | 1599971 | 18560343 ~ 18569388 (+) | False | XLOC_020351 |
| TCONS_00042131 | lncRNA | downstream | 68055 | 20246472 ~ 20247476 (+) | True | XLOC_020390 |
| TCONS_00042132 | lncRNA | downstream | 69492 | 20247909 ~ 20259347 (+) | True | XLOC_020391 |
| TCONS_00042133 | lncRNA | downstream | 82814 | 20261231 ~ 20265527 (+) | True | XLOC_020392 |
| TCONS_00042134 | lncRNA | downstream | 134386 | 20312803 ~ 20332834 (+) | False | XLOC_020393 |
| TCONS_00042135 | lncRNA | downstream | 134788 | 20313205 ~ 20332834 (+) | True | XLOC_020393 |
| TCONS_00040474 | mRNA | upstream | 14333 | 20145036 ~ 20155026 (+) | True | XLOC_020386 |
| TCONS_00040471 | mRNA | upstream | 25934 | 20135443 ~ 20143425 (+) | False | XLOC_020384 |
| TCONS_00040473 | mRNA | upstream | 27154 | 20141528 ~ 20142205 (+) | True | XLOC_020384 |
| TCONS_00040468 | mRNA | upstream | 522938 | 19640309 ~ 19646421 (+) | True | XLOC_020379 |
| TCONS_00040467 | mRNA | upstream | 522939 | 19640309 ~ 19646420 (+) | False | XLOC_020379 |
| TCONS_00040479 | mRNA | downstream | 16863 | 20195280 ~ 20240937 (+) | False | XLOC_020389 |
| TCONS_00040480 | mRNA | downstream | 16881 | 20195298 ~ 20203292 (+) | False | XLOC_020389 |
| TCONS_00040481 | mRNA | downstream | 29768 | 20208185 ~ 20241232 (+) | True | XLOC_020389 |
| TCONS_00040482 | mRNA | downstream | 248753 | 20427170 ~ 20429374 (+) | True | XLOC_020394 |
| TCONS_00040483 | mRNA | downstream | 283071 | 20461488 ~ 20473567 (+) | True | XLOC_020396 |
| TCONS_00040475 | other | upstream | 17378 | 20151925 ~ 20151981 (+) | True | XLOC_020387 |
| TCONS_00040472 | other | upstream | 29767 | 20139525 ~ 20139592 (+) | True | XLOC_020385 |
| TCONS_00040470 | other | upstream | 376126 | 19793119 ~ 19793233 (+) | True | XLOC_020381 |
| TCONS_00040469 | other | upstream | 397547 | 19771698 ~ 19771812 (+) | True | XLOC_020380 |
| TCONS_00040420 | other | upstream | 931133 | 19237031 ~ 19238226 (+) | True | XLOC_020360 |
| TCONS_00040488 | other | downstream | 915434 | 21093851 ~ 21093965 (+) | True | XLOC_020402 |
| TCONS_00040522 | other | downstream | 2387757 | 22566174 ~ 22588719 (+) | True | XLOC_020427 |
| TCONS_00040524 | other | downstream | 2662141 | 22840558 ~ 22840675 (+) | True | XLOC_020429 |
| TCONS_00040525 | other | downstream | 2777315 | 22955732 ~ 22955849 (+) | True | XLOC_020430 |
| TCONS_00040526 | other | downstream | 2917271 | 23095688 ~ 23095804 (+) | True | XLOC_020431 |
