Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040493 |
| length | 809 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 2 |
| gene id | XLOC_020405 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 21252790 ~ 21304247 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0004866 | endopeptidase inhibitor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050208-428 | Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within negative regulation of peptidase activity. Predicted to be located in extracellular space. Is expressed in iris and periocular mesenchyme. Used to study anterior segment dysgenesis. Human ortholog(s) of this gene implicated in anterior segment dysgenesis 8. Orthologous to human CPAMD8 (C3 and PZP like alpha-2-macroglobulin domain containing 8). |
| ensembl_id | ENSDART00000148230 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042137 | lncRNA | upstream | 138602 | 21134709 ~ 21141119 (+) | True | XLOC_020403 |
| TCONS_00042136 | lncRNA | upstream | 705761 | 20571834 ~ 20573960 (+) | True | XLOC_020399 |
| TCONS_00041896 | lncRNA | upstream | 845704 | 20433570 ~ 20434017 (+) | True | XLOC_020395 |
| TCONS_00042134 | lncRNA | upstream | 946887 | 20312803 ~ 20332834 (+) | False | XLOC_020393 |
| TCONS_00042135 | lncRNA | upstream | 946887 | 20313205 ~ 20332834 (+) | True | XLOC_020393 |
| TCONS_00040504 | lncRNA | downstream | 374077 | 21655429 ~ 21658284 (+) | False | XLOC_020411 |
| TCONS_00040505 | lncRNA | downstream | 374121 | 21655473 ~ 21658284 (+) | True | XLOC_020411 |
| TCONS_00042138 | lncRNA | downstream | 387813 | 21669165 ~ 21766839 (+) | True | XLOC_020412 |
| TCONS_00042139 | lncRNA | downstream | 505427 | 21786779 ~ 21787648 (+) | True | XLOC_020413 |
| TCONS_00042140 | lncRNA | downstream | 507744 | 21789096 ~ 21797741 (+) | True | XLOC_020414 |
| TCONS_00040491 | mRNA | upstream | 14840 | 21252790 ~ 21264881 (+) | False | XLOC_020405 |
| TCONS_00040489 | mRNA | upstream | 114529 | 21152847 ~ 21165192 (+) | False | XLOC_020404 |
| TCONS_00040490 | mRNA | upstream | 115161 | 21153031 ~ 21164560 (+) | True | XLOC_020404 |
| TCONS_00040487 | mRNA | upstream | 532659 | 20720808 ~ 20747062 (+) | True | XLOC_020401 |
| TCONS_00040486 | mRNA | upstream | 567067 | 20710434 ~ 20712654 (+) | True | XLOC_020400 |
| TCONS_00040494 | mRNA | downstream | 24330 | 21305682 ~ 21311540 (+) | True | XLOC_020406 |
| TCONS_00040495 | mRNA | downstream | 36245 | 21317597 ~ 21351469 (+) | False | XLOC_020407 |
| TCONS_00040496 | mRNA | downstream | 43046 | 21324398 ~ 21337705 (+) | True | XLOC_020407 |
| TCONS_00040497 | mRNA | downstream | 117156 | 21398508 ~ 21465808 (+) | False | XLOC_020408 |
| TCONS_00040498 | mRNA | downstream | 117167 | 21398519 ~ 21446715 (+) | True | XLOC_020408 |
| TCONS_00040488 | other | upstream | 185756 | 21093851 ~ 21093965 (+) | True | XLOC_020402 |
| TCONS_00040475 | other | upstream | 1127740 | 20151925 ~ 20151981 (+) | True | XLOC_020387 |
| TCONS_00040472 | other | upstream | 1140129 | 20139525 ~ 20139592 (+) | True | XLOC_020385 |
| TCONS_00040470 | other | upstream | 1486488 | 19793119 ~ 19793233 (+) | True | XLOC_020381 |
| TCONS_00040469 | other | upstream | 1507909 | 19771698 ~ 19771812 (+) | True | XLOC_020380 |
| TCONS_00040522 | other | downstream | 1284822 | 22566174 ~ 22588719 (+) | True | XLOC_020427 |
| TCONS_00040524 | other | downstream | 1559206 | 22840558 ~ 22840675 (+) | True | XLOC_020429 |
| TCONS_00040525 | other | downstream | 1674380 | 22955732 ~ 22955849 (+) | True | XLOC_020430 |
| TCONS_00040526 | other | downstream | 1814336 | 23095688 ~ 23095804 (+) | True | XLOC_020431 |
| TCONS_00040529 | other | downstream | 2210974 | 23492326 ~ 23493332 (+) | True | XLOC_020436 |
