RNA id: TCONS_00040490


Basic Information

Item Value
RNA id TCONS_00040490
length 1378
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_020404
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21152847 ~ 21165192 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGCAGGAAAATGGATTGTGCGCGCGCGCGCTCGCACCAGCATGACAAGAATCGAGTTGAGAGCGCGCGCGACAGACAAATGACAATTTCAGTCATTATGTTGTTTTTTGTCGCGTTTCTTCCATATGCGCTCTCAGCACATTTGCCTGTCATATCCCCCCAGGATCCAGTACTTCCCATTGGCTCGAGCTTGACTGCGGTGTGCACTGTGAGTGCCGAGCTGGAAATAACAGCTAGGTCCTTGTACTGGACACTGAATGGGAGACGCTTGGCTAGAAACACGTACAGAGTCCTGAGCCAGACCGAATCGAGTGTCACACTTCATCAACTCAATGGCTCCTTGCAGCAGTCAGGAGATAATCTGGTTTGCCATCGAAGTAATGGAGAAGTGCTGGCCGGGTCCTGTCTTTATGTCGGCTCATCCCCTGAGAAACCCATCAACCTGACATGctggtcacgaaacaccaaagaTCTGAGCTGCAGATGGAGTCCGGGAAGTCAAGGAGAGACGTTCATCAATACCAAATACGTCCTCAAGTACAAGCTGAAATGGTATGGTAAGGAAAAGGACTGTGAAGACTACACGGGACAGTCGTATACATGTTACGTTCCACGTGACCTTGCCATTTTTACACCATATGAAGCCTGGGTTGAGGCGACCAATCAGCTTGGCTCTGCCACTTCAGATGTCATCACCTTGGACATTTTAGATGTAGTAACTACAGACCCCCCTCCTGATGTTCTTGTAAGCCGTGTTGGAGATCTGGAAGATCAGTTAAGTGTACGTTGGGGCAGTCCTCCTGCCCTGAAAGACTACCTGTTTCAGGCCAAATATCAGATCCGATACCGTGTGGAGGAGAGTGACGAATGGAAGGTAATAGATGATGCTGGGAACCAAACATCATGTCGTTTGGCTGGTCTCAGAGCGGGTACAGTGTATTTCGTCCAGGTACGATGCAACCCAGTGGGCATCTACGGTTCGAAGAAGGCAGGTATATGGAGCGACTGGAGCCACTCAACTGCCGCATCAACTCCTGGCATTGATAGGTCCCAAAGTGGCTCGTGCGATTCAAAGCCCAGCGAGAACAACTCAACGCTACGCAAGGAGCTCAAGCAGTTTTTCGGCTGGATGCGCAAGCACTCTTATGGCTGCACGGACGTTAGCATCAAACTGTACGACCAATGGCGCGTCTGGCTGCAGAAAGCCCAGAAAACACATGATCAGGTCAGTAAAAAAAGACACACATCAAGACTCCACACAATCAATGTTGGCACACATGACACACACAGCCTCCATTTTGTGGTTTTGTGTGCAACCCACAAAAAAGAGAGCCCAAATATCTGGTAATTCTTTTGATCAATACACTCGCATTTGA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein biological_process
GO:0097058 CRLF-CLCF1 complex cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080108-1 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

Ensembl:

ensembl_id ENSDART00000166342

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042137 lncRNA upstream 11912 21134709 ~ 21141119 (+) True XLOC_020403
TCONS_00042136 lncRNA upstream 579071 20571834 ~ 20573960 (+) True XLOC_020399
TCONS_00041896 lncRNA upstream 719014 20433570 ~ 20434017 (+) True XLOC_020395
TCONS_00042134 lncRNA upstream 820197 20312803 ~ 20332834 (+) False XLOC_020393
TCONS_00040493 lncRNA downstream 115161 21279721 ~ 21281352 (+) True XLOC_020405
TCONS_00040504 lncRNA downstream 490869 21655429 ~ 21658284 (+) False XLOC_020411
TCONS_00040505 lncRNA downstream 490913 21655473 ~ 21658284 (+) True XLOC_020411
TCONS_00042138 lncRNA downstream 504605 21669165 ~ 21766839 (+) True XLOC_020412
TCONS_00042139 lncRNA downstream 622219 21786779 ~ 21787648 (+) True XLOC_020413
TCONS_00040487 mRNA upstream 405969 20720808 ~ 20747062 (+) True XLOC_020401
TCONS_00040486 mRNA upstream 440377 20710434 ~ 20712654 (+) True XLOC_020400
TCONS_00040485 mRNA upstream 592244 20560041 ~ 20560787 (+) True XLOC_020398
TCONS_00040484 mRNA upstream 605624 20546612 ~ 20547407 (+) True XLOC_020397
TCONS_00040483 mRNA upstream 679464 20461488 ~ 20473567 (+) True XLOC_020396
TCONS_00040491 mRNA downstream 88230 21252790 ~ 21264881 (+) False XLOC_020405
TCONS_00040492 mRNA downstream 91300 21255860 ~ 21304247 (+) False XLOC_020405
TCONS_00040494 mRNA downstream 141122 21305682 ~ 21311540 (+) True XLOC_020406
TCONS_00040495 mRNA downstream 153037 21317597 ~ 21351469 (+) False XLOC_020407
TCONS_00040496 mRNA downstream 159838 21324398 ~ 21337705 (+) True XLOC_020407
TCONS_00040488 other upstream 59066 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040475 other upstream 1001050 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040472 other upstream 1013439 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 1359798 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 1381219 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040522 other downstream 1401614 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 1675998 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 1791172 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 1931128 23095688 ~ 23095804 (+) True XLOC_020431
TCONS_00040529 other downstream 2327766 23492326 ~ 23493332 (+) True XLOC_020436

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_04163915_04171784.mRNA True 1848 mRNA 0.49 9 CI01000030 4163915 ~ 4171907 (+)