Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040484 |
| length | 796 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 1 |
| gene id | XLOC_020397 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 20546612 ~ 20547407 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006366 | transcription by RNA polymerase II | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:0007623 | circadian rhythm | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070424-213 | Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in circadian rhythm and regulation of transcription, DNA-templated. Predicted to act upstream of or within immune response and transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000141852 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00041896 | lncRNA | upstream | 112595 | 20433570 ~ 20434017 (+) | True | XLOC_020395 |
| TCONS_00042134 | lncRNA | upstream | 213778 | 20312803 ~ 20332834 (+) | False | XLOC_020393 |
| TCONS_00042135 | lncRNA | upstream | 213778 | 20313205 ~ 20332834 (+) | True | XLOC_020393 |
| TCONS_00042133 | lncRNA | upstream | 281085 | 20261231 ~ 20265527 (+) | True | XLOC_020392 |
| TCONS_00042132 | lncRNA | upstream | 287265 | 20247909 ~ 20259347 (+) | True | XLOC_020391 |
| TCONS_00042136 | lncRNA | downstream | 24427 | 20571834 ~ 20573960 (+) | True | XLOC_020399 |
| TCONS_00042137 | lncRNA | downstream | 587302 | 21134709 ~ 21141119 (+) | True | XLOC_020403 |
| TCONS_00040493 | lncRNA | downstream | 732314 | 21279721 ~ 21281352 (+) | True | XLOC_020405 |
| TCONS_00040504 | lncRNA | downstream | 1108022 | 21655429 ~ 21658284 (+) | False | XLOC_020411 |
| TCONS_00040505 | lncRNA | downstream | 1108066 | 21655473 ~ 21658284 (+) | True | XLOC_020411 |
| TCONS_00040483 | mRNA | upstream | 73045 | 20461488 ~ 20473567 (+) | True | XLOC_020396 |
| TCONS_00040482 | mRNA | upstream | 117238 | 20427170 ~ 20429374 (+) | True | XLOC_020394 |
| TCONS_00040481 | mRNA | upstream | 305380 | 20208185 ~ 20241232 (+) | True | XLOC_020389 |
| TCONS_00040479 | mRNA | upstream | 305675 | 20195280 ~ 20240937 (+) | False | XLOC_020389 |
| TCONS_00040480 | mRNA | upstream | 343320 | 20195298 ~ 20203292 (+) | False | XLOC_020389 |
| TCONS_00040485 | mRNA | downstream | 12634 | 20560041 ~ 20560787 (+) | True | XLOC_020398 |
| TCONS_00040486 | mRNA | downstream | 163027 | 20710434 ~ 20712654 (+) | True | XLOC_020400 |
| TCONS_00040487 | mRNA | downstream | 173401 | 20720808 ~ 20747062 (+) | True | XLOC_020401 |
| TCONS_00040489 | mRNA | downstream | 605440 | 21152847 ~ 21165192 (+) | False | XLOC_020404 |
| TCONS_00040490 | mRNA | downstream | 605624 | 21153031 ~ 21164560 (+) | True | XLOC_020404 |
| TCONS_00040475 | other | upstream | 394631 | 20151925 ~ 20151981 (+) | True | XLOC_020387 |
| TCONS_00040472 | other | upstream | 407020 | 20139525 ~ 20139592 (+) | True | XLOC_020385 |
| TCONS_00040470 | other | upstream | 753379 | 19793119 ~ 19793233 (+) | True | XLOC_020381 |
| TCONS_00040469 | other | upstream | 774800 | 19771698 ~ 19771812 (+) | True | XLOC_020380 |
| TCONS_00040420 | other | upstream | 1308386 | 19237031 ~ 19238226 (+) | True | XLOC_020360 |
| TCONS_00040488 | other | downstream | 546444 | 21093851 ~ 21093965 (+) | True | XLOC_020402 |
| TCONS_00040522 | other | downstream | 2018767 | 22566174 ~ 22588719 (+) | True | XLOC_020427 |
| TCONS_00040524 | other | downstream | 2293151 | 22840558 ~ 22840675 (+) | True | XLOC_020429 |
| TCONS_00040525 | other | downstream | 2408325 | 22955732 ~ 22955849 (+) | True | XLOC_020430 |
| TCONS_00040526 | other | downstream | 2548281 | 23095688 ~ 23095804 (+) | True | XLOC_020431 |
