RNA id: XM_021625213.2


Basic Information

Item Value
RNA id XM_021625213.2
length 1542
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110538406
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74637224 ~ 74639489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTCGTTACGTCACTGGTGGGGGTTGTGTTTTTCAGTCGCGCTCAGCACCTTTGGTTCCATTCCTTGTCTGGAGATTCAAGTAGATGGACACTGGTGGTTCTAGCACCGCTTCTTTTGGAATTATTCTTCTTCAGTGTGGATTTGTGCTTATCTGTGTTGGAATTATGTTGTCTGACTCAATACAGAAACGCTATAAAGGTCATCAGTGAGTTTAGTCGTCTGCCTTCTGGTCTGCAACCGCTGCCTTTGAAGTAGGTGTGAATGCTTCATCTCTCTggagacacccaccacctccgCTACTAGAGTCTGCCACCTCACTATCAGGACCAGGCAACCAGCCAGAATGGGCAACCAGCTAACAGAGATCGCCCCCAACACTCCTTTCCTCCCCAACTTCCAGTCTCTGCATGTGGTCGTCATCGGCCTGGACTCTGCAGGAAAGACCTCCCTTCTGTACAGACTAAAGCTCCGAGAATTTGTGGAGACTATCCCCACAAAGGGCTTCAACACTGAACGGATTAAAGTAGCAGTTGGAAGCTCGCGGGCCACCACCACCTTCCAGGTGTGGGACGTGGGCGGTCAGGAGAAGCTGCGGCCCCTGTGGAAGTCATACACGCGTCGCACCGATGGCCTGGTGTTTGTTGTGGATGCTGCAGAAACTGAGCGTATGGAGGAGGCCAAAGTGGAGCTCCACCGCATCAGTCGCTCGGCAGAGAACCAGGGAGTACCAATTCTGGTGCTTGCCAACAAGCAGGACTTGGACTCTGCAGTCTCTGCTGTGGAGGTGGAGAAGGCCTTGGCCCTCCACGAGCTTAGCAACTCCACACTGCACCACACCCAGGGATGCAGCGCGCTGAACGGTCAGGGGCTCCAACCCGGCCTGGAGAAACTATATGAAATGATCCTAAAGAGGAAGAAGCTGCTCAGACACAGTAAGAAGAAGAGATGAACTGTGCGGCTGAGCTTCCGAAAGGCGCTTCGCCCGCAGAATGGACCTCGTTGGTGTTCCTTGGAATTTTATGGGAATTTTGTGCCCCGGAGGACCTGCTTCTGGTTTCCCAGTGACGGTCAGTCCAGAGGATGGAGAAATAGACCTGTTATACTATACGTTGGACACCGCACAGACTACGTTCAGCCCTTTACAGTGGCTTTTTTCCCCCGATAAACTTTCCCACCTTTTTTATCAAGTTGTGCCGACACGGTCTAGTCCAAACGTCCAGTGACGTATGGTACTTCTAATTTAGTTTACCTTGTAGTTCACTTTGTTTCATGGAGGTGGTTCACCGTTGGAAAAGACGACGCTTTTGTAGATCAAAAGAGGGACTGTATTTCAACCCAATGTTCAGATGGCATTGGAACTGAAATGCCTGCTAGCACGAGGCCTGAGGCTGCTAGCCATGATGCAAGTTTTCACCACAGTTTTGCTTGTCATGGTAGACTTAAATGTGTGAAGTTGTTACAACCAATATGTTTTTACATTCTGTACATATTTTTTGTTGTAATACTTACAAATGAATAAATTATTGAAGACACTATCTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1262234 lncRNA upstream 29545 74605123 ~ 74607679 (+) True G1110195
TU1262233 lncRNA upstream 30697 74605123 ~ 74606527 (+) False G1110195
TU1262211 lncRNA upstream 57615 74579179 ~ 74579609 (+) True G1110175
TU1262180 lncRNA upstream 102208 74534589 ~ 74535016 (+) True G1110154
TU1262172 lncRNA upstream 138427 74495060 ~ 74498797 (+) True G1110146
TU1262244 lncRNA downstream 548 74640037 ~ 74640264 (+) True G1110204
TU1262245 lncRNA downstream 954 74640443 ~ 74640729 (+) True G1110205
TU1262255 lncRNA downstream 19567 74659056 ~ 74659390 (+) True G1110215
TU1262256 lncRNA downstream 20542 74660031 ~ 74660345 (+) True G1110216
TU1263100 lncRNA downstream 24449 74663938 ~ 74664363 (+) True G1110952
XM_021625208.2 mRNA upstream 4547 74623355 ~ 74632677 (+) False LOC110538405
XM_021625211.2 mRNA upstream 4548 74623308 ~ 74632676 (+) False LOC110538405
XM_021625212.2 mRNA upstream 4548 74623310 ~ 74632676 (+) False LOC110538405
XM_021625207.2 mRNA upstream 4548 74623355 ~ 74632676 (+) False LOC110538405
XM_021625210.2 mRNA upstream 4548 74623356 ~ 74632676 (+) False LOC110538405
XM_021625205.2 mRNA downstream 91045 74730534 ~ 74761760 (+) True LOC110538402
XM_021625193.2 mRNA downstream 130516 74770005 ~ 74776525 (+) False LOC110538400
XM_021625196.2 mRNA downstream 130516 74770005 ~ 74776525 (+) False LOC110538400
XM_021625197.2 mRNA downstream 130516 74770005 ~ 74776525 (+) False LOC110538400
XM_021625199.2 mRNA downstream 130516 74770005 ~ 74776525 (+) False LOC110538400
TU1261780 other upstream 790430 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 802618 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1251357 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1331070 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2618934 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 320777 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 779300 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1105650 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1111381 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1144861 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile