RNA id: XM_036938418.1


Basic Information

Item Value
RNA id XM_036938418.1
length 7169
RNA type mRNA
GC content 0.60
exon number 28
gene id LOC110538388
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74960037 ~ 75102995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCgttttcaacacacacacacatcttcttAGCAATGTTTGGTCCTTCTCAGGCAGTCGCATAATGAATAGTATCTCGTTCTTTTTCACTGGGTGGTAATTATTGGAGGCAAATTGAGCGAAATTCTGGGATTTTTTCCTCCCTCAAAACCTGGAGTAGGAGGTACCTCAGTGGGAGAAGGACGGAACGATCGAACACGTCGAATCTTTACGCACGCTCGCGAAGGCTGTGTTGTGGTCCAGCTGCTTATTGGAAATCTTGCTGAAACGTTAGCTAGCCATTGCACTGACGTTTATCTACGAACTGACACGGGTTTAATGGTCAGTGGGACGTTCTTGCCTCGGCTTATTTGACAGTGGAGGAGGTGAAAAAAATCAAGATACACCAGAGTGCATCAGTTGGGAGATGGGAGAAGGGCTTAGGCTTGAGCCTGTCGCTGCCCCACCCGTCTCACTGTGAGGCCTTTGTCTCCTACTCATGATTTCTCTATAGCCGCTGCAGACCGGTGCAGTCATGTTCAGGAACAGCTTGAAGATGCTGCTTGGCGGCAAGTCCAACCGCAAAAATCGCAACAGTGGCGGCAGCTCCACAGAGGGTGACGGGCTATTTGAGGGCGACTACGGGGGGCCTCCTCTCCCGGTGACCGAGGGCATGCAGCACATCCGTATCATGGAGGGTGTGTCACGCTCGCTGCCCTCCTCCCCCCTACTCTCCCACCAGGCCCTCAACATGAGAATGCAGCCCACCAAAAGGCTCCCAGgTGAGGAGAGCCAGGAGCTGGGCCCCCCTCCCTCTGTGGACGAGGCAGCCAACACCCTGATGACGCGCCTGGGCTTCCTCCTGGGAGACAAGATGAACGAGGGACAGTCGGGCTCACAGTACGACATGGACAACCACGATGACAGCCAgGGCATGATGTCAGTGACCCAGCGGATCAGCCCCTGCTCCAGCCTGGCCAGCAGCACAGCCTCTCCCCCTGCAAGCAGCCCCTGCTCCACGCTGCCCCCAGGAGGGGCCCCCGGGAAACACGCTTCTGGAGACTGCGCCTATGGTTCCATCACCAGCCCCACCTCCACCCTGGAGAGCAGGGACAGCGGCATCATCGCCACACTGACCAGCTACTCTGAGAATGCTGACCGGGGTGGGGGGAAGCATGGGGAGGGCTCGCGGGGTAGCCTGAAGCTGTGGCAGACCCAGAAGTGTTTGGGCACAGACTCGTTCCTGTACCGCGTGGATGAGAACATGGCTGCCTCCACCTACAGCCTGAACAAGATCCCAGAGAGGAGCCTGGAGACGGCCCACTCCTCCCACTCTGCCCACTCCATCCCCCTCTACCTCATGCCCCGGCCCAACTCTGTGGCAGccaCGAGTTCGGCCCACCTGGAGGACCTGGCCTACCTGGATGAGCAGAGACACACTCCCCTGAGGACCTCCCTCAGGATGCCCCGTCAGAACTCTGGGTCCGGGCGCTCCGGACATGACCTTAGAGCTTCTGCTTACAGCCATGCCTGGCAATCTAACTCACtacgCTTTGCCCCCTACCGCCCCCCGGATATCGCCCTCAAGCCCCTTCTGTTCGAGGTGCCCAGCCTGACAGCTGATTCGCTCTTCACCGGGAGGGAGTGGCTCTTCCAGGAAGTGGACGCCCGTCTTCACGGCGACGACTCGGCAGCCAATCGAGGTGTGGTTGTCGTGGGCAACGTGGGCTTCGGCAAGACTGCCATCATCTCCCGCCTGGTGGCACTCAGCTGCCACGGCAACCGCATGAGGCAGATCGCCTCGGACAGCCCTCACGCCTCGCCCAAACatggggaGACCCTGCCCCTCACCCAGCCCCAGCACTCCCATGGCACCCTGGGGGGCAGCTGCCCTGGCACCCCCGAGATGAGGAGACGCCAGGAGGAGGCTTTACGGCGGCTCGCCTCACAGGTGGTGGCATACCACTACTGCCAGGCGGACAACGCCTACACGTGCCTGGTGCCAGAGTTTGTCCACAACGTGGCGGCTCTGCTGTGCCGGGCACCCCAGCTCATGGCCTACAGGGAGCAGCTTCTGCGGGAGCCCCACCTGCAGAGCACCCTCAGTCTGCGCTCCTGTGTCCAGGACCCCCTCAATGCCTTCAGGAGGGGCGTGCTGGAGCCCCTCGACATCCTGCACAGAGAGAGGAAGATAGCATGTGAGGAGGACCTAATCATTCTGGTAGACGGGCTGAATGAGGCAGAGTTCCACAAGCCGGACTACGGCGACACCATCACCTCCTTCTTGTGTAAGACCATGGAACGCTTTCCTCCCTGGCTCAAACTGGTGGTCACCGTCAGGACCTCCCTACAGGAGATCACACATCCCCTTTCGTTCCACCGTATCTCTCTTGACCGCCTGGAGGAGAATGATGCCATAGACCAGGACCTGCAGGGCTACCTGCTGCAGCGGATCCAGGGCAGTGCTGAGATCCAGAGCAACGTGTCTCTCAACGGGCGTCTGGACAACGCAGCCTTCGCCAAGCTGAGCACCCACCTTAAGGCCCTGAGCCGTGGCTCCTACCTCTACCTGAAACTGACGCTGGACCTCATCGAGAAGGGCTACctggtgctcaagagctccagctTCAAGGTGGTGCCGGTGAGCCTGGCTGAGGTGTACCTGCTGCAGCTCAACATGCGTTTCCCCACCCAGTCGTCCTTCGAGCGTGCCCTCCCCCTGCTCAACGTGGCCGTggcctccctccaccccctcacgGACGAGCAGGCATACGGGGCAGTGAACGCTGGCACCGTGCAAGGCCCTGCCCTGGACTGGGAAGACTTCCAGGGGAGACTGGAGCTGCTATCGCCCTTCCTGGTGCGGAGGAGGGACGGAACACGTATGTTCACACACCCCTCCTTCAGGGAGTGGCTCATCTGGAGGGAGGACGGGGAGAAGACCAAGTTCCTCTGTGACCCGAGGAGTGGCCACACTCTCCTGGCCTTCTGGTTCTCACGTCAGGAGGGCAAACTGAACCGGCAGCAGACCATAGACCTGGGCCACCACATCCTCAAAGCACACATCTTCAAGGGCCTGAGTAAGAAGGTTGGGGTCTCCTCGTCAGTCCTGCAGGGGCTCTGGGTCTCTTACAGCACAGAGGGGCTCTCCACTGCTCTGGCCTCACTGAGGAACCTTTACACACCCAACATCAAGGTGAGTCGTTTGTTGGTCCTAGGCGGCGCCAACGTTAACTACCGTTCTGAGGTTCTGAACAATGCCCCATTGCTGTGTGTCCACGCCCACCTGGGCTACACGGAGACAGCCGGCCTGCTGCTGGAGAACGGAGCGCACGTAGACGGGGAGTCCGACAGCGGCCTCACCCCGCTGGGCTATGCCGCCGCCGCTGGACACCTGTCCATCGTCACTGCGCTCTGCGCCTGCAAGGCTAAGGTGGACCACCTGGACAGGAACGGTCAGTGTGCGCTGGTGCACGCTGCACTGCGAGGACACCTGCAGGTGGTCAAGTTCCTGATGCAGAGTGACTGGAACCCTGACGGACAGCCCCAAGGAGCCTTCACCAAGAGTCACGCTGTCCAGCAGGCCCTTATAGCAGGGGCCAGCATGGGATACACAGAGATCGCCTCTTACCTATTGGACCTGCCagagaaggatgaggaggaggaggagcgagCACAGATCAACAACTTTGACACACTCTGGGGAGAGACTGCTCTGACTGCAGCAGCAGGCAGGGGGAAGCTGGATGTGTGCAGGCTGCTGTTGGAACAAGGGGCAGCGGTTGGACAGCCTAACCGCCGGGGCATCGTGCCTCTCTTCAGCGCTGTGCGCCAGGGACATTGGCAGATAGTGGACCTGCTGTTGAACCATGGAGCTGACGTCAACATGGCAGACAAGCAGGGCCGCACGCCCCTCATGATGACCTCCTCAGAGGGCCACCTCGGCACAGCAGAGTTCCTACTGGCACAAGGTGCGTCTCTGGCCCTGATGGACAAGGAGGGTCTGACTGCTCTGAGCTGGGCGTGTCTGAAGGGCCACATGCCATTGGTGCGCTGCCTGGTTGAGAGAGGCGCGGCCACCGCCCACGCCGATAAGAGTGGACGCACCCCCCTGGACCTGGCCTCGTTCTACGGAGACTCAGAAGTGGTGCAGTATCTGGTGGACCACGGGGCGATGATAGAGCATGTGGACTACAGTGGGATGCGACCTCTGGACCGGGCCGTGGGCTGCAGGAACACCTCTGTGGTGGTGGCTCTGCTCAAGAAGGGAGCCAAGATGGGTCCGGCCACCTGGGCCATGGCCACCTCCAAACCCGACATAATGATCGTCCTGCTCAGCAAGCTGATAGAGGAAGGAGATGGCTTCTACAAGAAAGGTAAAGTGAAGGAGGCGGCCCAGCGGTACCAGTATGCCTTAAAGAAGTTCCCCCGCGAGGGCTTCAGCGAGGACCTCAAGACCTTCAGAGAGCTCAAGGTGTCCCTCCTCCTCAACCTGTCCCGCTGTCGGAGGAAAATGAATGACTTTGGGATGGCTGAGGAGTTTGCTACCAAGGCGCTAGAGTTGAAATCCAAATCGTACGAGGCCTTTTACGCCAGAGCCCGCGCCAAGCGCAGCAGCAGGCAGTTCCACGCAGCCCTGGAGGACCTGAATGAGGCCACCCTCCTTTGCCCTAACAACCGGGAGATCCAGCGCCTGCtgcagagggtggaggaggagtgtCTTCAGTTCGAGGAGCAACAGGAGCTGGaccctcccccatcccctcccAGAGAGCAGGCCGCGCTCCCTCCCCAGTCCCTGGAGCCAGTGCAGGACCTGTTTGAAGAGGACGAGGACTACCTGGAGCAGGACCTGGAGAACCTCCCCATGGGCATGACTCCTGAGCCCCGCTCAAGCCCCTCTGGCCTGCCCCTCATCCAGAGCCTGCCCCCCTCTCCGTGCCACCGCAACTCACCCTACCTCTCCGGAGGCCCCTCCATGGTCCAGGCTTTCGAGCTGCCCCCCAGCCCCCCTTCCATGTCCTCCCCCACGCGCCAAGGCTACCAGTCCACCTCCCCGTCACTTTCCCCGACACACCAGAGCTCCCACTACCGGCCCAGCCCTCCGCACACCTCCCCAGCACACCAGGCTTCCGCTACGCCGTACAACTTCAGCCCACCACCTTCGCCTCTCCGCCGGGGGCCTCAGTACCGCGCCAGCCCCACCTCAGAGAGCGGAGGAGGTCTGTACCGGCCACAGTCGGCCTCAGCCCGCTACCAGTCGGAGCAGATACCTGGCCGGCCGAAGTCTCCGCTGTCTAAGATGAGCAGCCAGCGCTCCTTCCAGCTGCTCTCCCAGCAGCAACCTCCCCAGCAGGGCCAGTGGCTGCAGCCTGCCAAGGCTCAGATCGTACGCACCAACCAGCCCAGCTCCGCTGTGCACTCCAGTGCTGTGCTGGGCACCAGTGCCTACAGCCAAATGGCCCACTCCATGAGCACCCGCCTCCCCCCCGACCTGGCCGAGCTGGGGGACGGGGTGAATATATACCCCAGTGCCCTGGAAGGGAGGCCCACGCTGCAGGTGCAGGCCAGCCTCAGTGCAGGAGCACTCTACCAACATGTTGGGATCCAGATGGTCCCAATGGAGGACGAGCTCCCCCAGCGGCCCTCCTCAGCTTACCGGCCTGGAGGTCCGCGCTACGGCCAGGCCCCCCAGATCAGCCGCAGCCAGTCGGCAGCGTACTACCCTGTCTCACCTCAGATGGAGATGGAGTTAGAGATGGAGCACCAGGCGGCGCTGGGATCACCGGAGAACCCCCACGGCCTGCGCCGACCTGTCAGTGCCACCAGCACAGAGCCAAAGCCACACGCACCCACTCCCCGGCCCCTCATGCACTCCCAGAGCGTAGGCCTCCGCTTCTCCCCCTCCAACACAAGCCTGGGTGGGGTCTCTGCAGCTAATCTAGCCCCAGGCTTTCGGGGCTCCACCTCAGCCCAGCAGATGGAAATCCCTCTACAGCTGTCCTACGAGGATGGTAGCGTCTACTGCGACGACCTCTCACCTGTGTCTCCTCCGCAGGGCAGCGACATAAGGGTGGTGGGAGGGACGTACCCAGACAAGGCGCTCCGATCCAGAAACACACCTTTCATGGGCGTTGTCGACAAGACGGCGCGGACTCACCAGTACCTGCCACCGCAACCGCAGACAATAGGGCGCTCCTGGGCCATCTCTTCCCTGGACACGGTGGTGACAAGCTCCGCCACGTCTCCAGGGAACATTGGCCCTCAGCATGGCTACAGCCAACAGCCCAGCCTGGGACACATAGCCTACTACAACCGCACCAACAATGCCCACAACGGACACCTCCTGGACGATGACTACTACCAGCCGCCAGCTAACAGCTCACGGGACGGCAGGGCAGACGGTATGGGCCGCGTGAGCCAGGCGCCCACCTACCCAGACGTCAAGGTGGCCCGGACGCTGCCTGTGGCCCAGGCCTACCAGGACAGCGAGTACATGCAGCactccagggacaggcagggcCCCACGTCCCCTATCAAACCAAAGAGACCTTTCGTGGAGTCAAACGTGtagggagggactgagggagaggactgaTAAGCCTGCAGATATTTTGATTTGCAGTGACTTAGAGACAACCCCAAGGGTATGTGATGAGACTGGGAAGGCAACACTACTGCagacaaacacatttaaactctcCTCCCATGCATCTTCTTTGACTTTGTCCTTCACAGCCATTTACTATGGATGAATACAAGAAAGCCTAAAACTGCAGTTTGCCAGGTGAATCCAACACCTCCAGTACTCCAGAATATGTTGGCCTTCTGTTTGCAGAGTAGTTTGTATAGTCAGTGGAGGGGACAGGGATGATCCACAACTTTAGGAACTGGagtctgttggaaaagcatgTAGGACTAATACCACACACCCTGACCTGGAAACCTCCAGATCTCAAGCAGGGGAGACTGCTGCCTGCCGTTTTCTCCCTGCCCCTGAATGCCTGTCCTGGGATGGTCACACTCAAGCCATGGGCACTTCCCTGCTTCACCTGTTGAAGTCCAAACTCTCAATGCCTTCTTCAGAACAACTCAATAGAAGGCCGCCCTTCACTAAGATGACCATGTTCTCTGCTGTAAATGTGACTGAAAAGAGGCTTCAACATACTTGTACATAGGAAAAGcaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263251 lncRNA upstream 53527 74906201 ~ 74906510 (+) True G1111083
TU1263246 lncRNA upstream 57995 74901767 ~ 74902042 (+) True G1111078
TU1263244 lncRNA upstream 60238 74899574 ~ 74899799 (+) True G1111076
TU1263242 lncRNA upstream 61683 74898092 ~ 74898354 (+) True G1111074
TU1263238 lncRNA upstream 65439 74894128 ~ 74894598 (+) True G1111070
TU1263292 lncRNA downstream 845 75103840 ~ 75104377 (+) True G1111123
TU1263293 lncRNA downstream 1471 75104466 ~ 75104754 (+) True G1111124
TU1263411 lncRNA downstream 25352 75128347 ~ 75128589 (+) True G1111240
TU1263439 lncRNA downstream 67505 75170500 ~ 75170718 (+) True G1111267
TU1263447 lncRNA downstream 76577 75179572 ~ 75179771 (+) True G1111275
XM_021625183.2 mRNA upstream 17691 74941319 ~ 74942346 (+) True LOC110538391
XM_021625185.2 mRNA upstream 26236 74930862 ~ 74933801 (+) True LOC110538393
XM_021625188.2 mRNA upstream 128044 74792419 ~ 74831993 (+) False LOC110538397
XM_021625178.2 mRNA downstream 33266 75136261 ~ 75216446 (+) False LOC110538386
XM_021625174.2 mRNA downstream 59883 75162878 ~ 75216446 (+) False LOC110538386
XM_021625175.2 mRNA downstream 59883 75162878 ~ 75216446 (+) False LOC110538386
XM_021625176.2 mRNA downstream 59884 75162879 ~ 75216446 (+) False LOC110538386
XM_021625177.2 mRNA downstream 59884 75162879 ~ 75216446 (+) True LOC110538386
TU1261780 other upstream 1113243 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1125431 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1574170 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1653883 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2941747 72017593 ~ 72018290 (+) True LOC110538241
TU1264041 other downstream 315794 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 642144 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 647875 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 681355 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 684541 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile