RNA id: XM_021557401.2


Basic Information

Item Value
RNA id XM_021557401.2
length 5051
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110486072
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29498062 ~ 29591905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGATCCCTCTCTCGCCACCTGGCGTTGCTACTGTCATGTTCTTTCGTCTTACAGCGTTGCGTAGGAATATAATGTTGCTTGCATgcgttctataaaatatattccatGAACACGGGTTGTACCCGCGTAGGCTACCCTGCGCCCAAGCCTTTTGGGAGGGGAGAATGAAGTTCGCTCCTGTGTAGGGTGTTGCTTTTACTACTACTCCCCCATCTCGCGTTCGTTTTCCTAGTGTGTCAGCCTATATATCAGGGTGGATCAATGCTGGATTCTTTCCTTCATACAAACTCCTATCCGTTCTTTCGGCCCGCTACACCCGCTTGCCTCGTACCCGGGGGCGCATCTATCAGCATAGATAGACCTGCGCTGGCTCCGAGCTGGCCTTGAGGTAGATATGCTGTAGTGTGGAATACTCCCTTTGGACGGTCGGGTAGGAAATGCCggtggtgtaaaaaaaaaaagaagtcaaATTCATATTTTCACTCGTCGCACTGTTCTCGGCGGCTGCCAAGCTCGGGGCTTAGCGGCCTGTACACACAAAATGTCGACCAGAACGCCATTACCCACAGTGAATGAGCGTGATACAGAGAATCACACTTCTGTGGAGGGCTACCAGGAGCCCCCGGCCCCGCCGGCCAAGTCGGGAAGTCGGCACAGCCTGCCGAGATGTCGGAACTCTGTGGCGTCCACGACGGAGGAGCAGCCACACATCGGGAACTACCGGCTGCTCAAGACCATTGGCAAGGGGAACTTCGCCAAAGTCAAGCTGGCCCGGCATATACTGACAGGACGAGAGGTTGCCGTGAAGATAATAGACAAAACGCAGTTGAACCCCACTAGTCTACAGAAGCTCTTTCGTGAAGTCAGGATCATGAAGATCTTGAATCACCCCAATATAGtTAAATTGTTTGAAGTCATTGAGACTGAGAAGACACTTTATTTGATAATGGAGTACGCCAGTGGTGGTGAGGTATTTGACTACTTAGTTGCACATGGAAGGATGAAGGAAAAGGAGGCTCGGGCCAAGTTTCGCCAGATTGTCTCTGCAGTGCAGTATTGCCATCAGAAGAGGATCGTCCACAGGGATCTGAAGGCTGAGAACCTACTCCTGGACGCAGACATGAACATCAAGATTGCAGACTTCGGCTTTAGCAACGAGTTTACCCTAGGCAGTAAGCTGGACACGTTCTGCGGCTCCCCGCCCTACGCTGCCCCAGAGCTGTTCCAGGGGAAGAAGTATGACGGGCCCGAGGTGGACGTCTGGAGCCTGGGGGTCATACTGTACACACTTGTCAGCGGCTCACTGCCCTTTGATGGACAGAATCTAAAGGAGCTGAGAGAGCGAGTGCTGCGAGGGAAGTATCGTATTCCGTTCTACATGTCTACAGACTGTGAAAACCTGCTGAAGAAACTGTTGGTGCTCAACCCTGGCAAACGGAGCAGCCTGGAGCAAATCATGAGAGACCGCTGGATGAACGTGGGCCATGAGGAGGAGGAGCTGAAGCCCCATCAGGAACCGGAACCCGACTGGAACGACACCAAACGGATAGaACTGATGATAACCATGGGCTTCCCCAAAGAGGACATCACTGATGCGTTAACAGGACAGAAGTACGACGAGACCATGGCCACTTACCTCCTTTTGGGCAGGAAACCAGCCGAGTTTGAGGGGAGCGAGTCGCTGTCCAATAGCAACCTGTGTCAAAGGTCACGGCCCAGCAGCGAGGCCAACAACAGTTCCAGCCAATCGCCTGCCCACTCCAAGGTCACACGCAGCATATCGGCCAACCAGAAGCAGCGGCGCTTCAGCGACCATGTGGCGCCCTCTATCCCCCCGTCTATGTCCTACACCAAGCGGGCGCAGGCCAACAGCGTGGAGAGCGACAAGGGCGATGCCGCCCACAAACTTGGCACGGCCGGTTCCAAGGCTGACGTGCCCACCTCGCCGCTGGTGGCACAGGAGAGGAAGAAGTCATCCACTGCCTCAGGGAACAGCAACGCTATGACCAGGAGGAACACGTACGTGTGTGAGCGGTCGAGCACAGATCACTACACGGCCATTCCCAATGGCAAGGACAGCAGTCTGACTGAGATGTCAGGCTCGGCCAGTGGCTCCTCGCCCTCGTCAGGGGCAGCCTCAGCTGTCACTTCCACCCGTCCGCGTCATGTCAAGTCCATGTCGGCGTCGGGCCACCCCATCAAGTCCCCACTGCCTCCCATAGACGACAACGCGGAGTACAAGGGCCCTCCCACGGCCTCACCGTCGGCGCACAGCATCAGCAGCAGCACGGCCGCCACGCCGCCTGACCGCACGCGCTTCCCCCGCGGCTCCTCCAGCCGCTCCACCTTCCACGGAGCCCAACTTCGCGACCGCCGCTCGGCCACCTACAACGGTCCGCCCGCCTCGCCCACACTCTCCCACGATACGGGGGCTCTGTCCCAGGCGCGCAGGGGCACCTCCACGGGCATCATTGGCAAGATCACCTCCAAGTTTGTCCGCAGGAGCGCGTCAGGGGAACCCAAGGAGGACGGTTCCCGGGACTCCAAACCCCGTTCACTGCGCTTCACATGGAGCATGAAGACTACCTCATCCATGGAGCCCGGCGACATGATGCGCGAGATCCGGAAGGTCCTGGATGCCAACAACTGCGACTACGAGCAGCGCGAGCGCTTCATGCTCTTCTGCGTGCACGGCGACGCCCGCCAGGACAGTCTGGTCCAATGGGAGATGGAGGTGTGCAAGCTGCCACGCCTCTCACTCAACGGCGTGCGCTTCAAGCGGATCTCAGGCACGTCCATCGCCTTCAAGAATATTGCGTCCAAAGTGGCCAATGAGCTCAAGCTGTGAAAAGTGACTTTTGGGAAAACTAAACAAACTAAAGAGAATTAACATACAACACTGAAAACGGAGGGGGCAGAGGACATAATCCTGGTGTTCCTTGAGTTTGCGGGCGCCCCACGTGTCGGGCCCAAGAGAGTCAGCCGCAATATTGAGTTTACCGCTATTCGAGGCTACTGCCATATTGCTTGGTGAATCGACACAAAATACACTCCCATTTTCCCCCCCCCAAGGCAAACCCCTGTATTACAAAATCGTTGATTATAACGAGAGGTGAGAACTGACCATTATTGCAATAATATgaaaacatttatatcaatggCCCGCAAAATTTCAATTCCATTGCTAAACTACCATTAGAGGGTTGAAATAAGAGACTGCAAAGCTACTTTTTCCACATGTACAGTATAAAATAAAATagagtatgttttgttgtattgTTCATAGAGTTGTATAAAACAAGGACTCTTCAGCATAATGTCTGCAGGTATTGTATAGTCTTGAGTTTCTGTACAGAAAGTGTTTAAATGTGTCATACTGTATTTTTTTCTTTTCGTTTGGAGTTATTTCCTTCTTGTTGACATATTTGTAGATTGTTTGCCTCCACTGAAGTCTAATGTTTAGaaggaaaaaaaaacaacattttttattATCACGGGGAAAAGGAAAAAAAACAAGCTTATTTTTTACTTTTCATGGATAATAAGTTCCTTTCCCAATACAGGAGAGATCGAGTGACGTGATCTGTGTTGAAAAGCAAAACTCTACACATCCCAAAGCCCTAATCAAGTCATTCCTCCTAATGCACTATTTTGGCCATTCTCACAACCCTCTTTCATGTAGCGTAGCTGAATGATGGCGTTAGCACTGCAGTTTAAAATGTTCTGTTTATTGCATAGAATTTAAATAAGGGATCTTATGCTGGCTAAGTCAGATGTGACGAACCATGTCCTTATCTTTGAGAACCCAAATATACGGTGTAGACTAGCAGGACCACAAATTGTTCAGTTGCACTCAATTTTAAGCCCGCTCTCATAAAGTCTGCTTTATGCAGTCTTAAACACGGTGTTGCAGTTGTCGCTGGCATTGCGCTCGATGATTAATCAAATGCTCTTCAAACAAATATTGGGACAAAACTACCCATTCAAAACACTATTCGTGGTCTTTTAGTAGCATAAATGCACCGGCCACCATTCTAGGTCAGGAAGTGACATCAATTATTATAACTGCCTCAAATATCTCATGTTCTGCTTGAGAATGCCCAAAGCTTTAAGGGTTCACACAAAGTGATGCCCAAGCAGTTTGACCTCACTAGTGACTATATCCCTCTGTTTCTCTTACTTCCTTCTAAACTGCAGTTAATTGGTAGTTACTGTGCGACACCTGTCTGACTTGTTTTGTGATCAATTTTATTTTCTTGcaaaatatattgtatttattcCACCACATTATGCCTTTTAATGTGCTGCTTGGTATTTCTGAGGCATTCACCTGTACAAGAAAAAAAATAGGATATAGCTAGTTTCgcacatttttattttgttttaggTTTTTCCCCTTTGTAATTAGTGATTGCGATGAGTACGTAAAATAACCACTAGTGCTGGTACGTTTCTACTTGTTATTTTGTATGAAAAGTAATGAGGGTCAATTGTGCAATGGTATTCCATGTTGTATTACTGTAAAGATGAGAGATGGGCCTATAGACCGCACCCTTTAACGCAACGCAGCGTAGagaatggaaacagaatgcagaCATTTTATTTCCTAATTTCAAAAGACACAATAGAAAGGAAAAAGCAAAGGCGAGtggttaaaaaataataatatgaaaACAAGGTTAAAAGCTGTGAGTCCTTCTGGAAGCTGAGCGAGAAATCTCCACCGCTGACTTTCTGTGGCATTATGGGAGCAGGGGGGGTTGGAGGGGGTACTGCACGTGGAAGAAAAATGCATATTCCTAATTGTTAACGGTACAACTTCCAGAGAGGATGTCTATTGTGTTGCCTTAGCAGATCAAGTGTAGAGGAGAAGCAGAAAGTGTTAAAGAAATGTAAATGATTATGCCTCGCCCTTTTCATCTCCATTAACCCCTCCCCCCACCGAAAGCACTCCTACCACAACATACATGCGAGGAAAGCTTGAGTCATCTAGATTCAGTCTCACTCGTGCACAATATTAAAGCTTACTTGAAAGGAGTCTCAAGCAAA

Function

GO: NA

KEGG:

id description
K08798 MARK; MAP/microtubule affinity-regulating kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1325586 lncRNA upstream 2224 29495252 ~ 29495839 (+) True G1162365
TU1325582 lncRNA upstream 4937 29492592 ~ 29493126 (+) True G1162361
TU1325133 lncRNA upstream 12456 29484799 ~ 29485607 (+) True LOC110486071
TU1325130 lncRNA upstream 59145 29437799 ~ 29438918 (+) True G1161961
TU1325120 lncRNA upstream 61618 29426276 ~ 29436445 (+) True LOC110486070
TU1325718 lncRNA downstream 94637 29686542 ~ 29687002 (+) False G1162471
TU1325719 lncRNA downstream 94637 29686542 ~ 29687002 (+) True G1162471
TU1325726 lncRNA downstream 107142 29699047 ~ 29699261 (+) True G1162478
TU1325695 lncRNA downstream 116032 29707937 ~ 29708562 (+) True G1162449
TU1325693 lncRNA downstream 121630 29713535 ~ 29719133 (+) True G1162447
XM_021557394.2 mRNA upstream 12250 29444123 ~ 29485813 (+) False LOC110486071
XM_021557393.2 mRNA upstream 69497 29419363 ~ 29428566 (+) False LOC110486070
XM_036940723.1 mRNA upstream 88590 29377409 ~ 29409473 (+) False LOC110486069
XM_021557413.2 mRNA downstream 63651 29655556 ~ 29706148 (+) False LOC110486077
XM_036940727.1 mRNA downstream 63655 29655560 ~ 29686494 (+) True LOC110486077
XM_021556141.2 mRNA downstream 250100 29842005 ~ 29894155 (+) False ncx
XM_036939698.1 mRNA downstream 250100 29842005 ~ 29894155 (+) False ncx
NM_001124598.1 mRNA downstream 250214 29842119 ~ 29891799 (+) True ncx
TU1325585 other upstream 3161 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 127116 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 198407 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 678615 28818734 ~ 28819448 (+) True G1159924
TU1322370 other upstream 998857 28472676 ~ 28499206 (+) True LOC110487355
TU1326020 other downstream 238849 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 1522406 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 2409846 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 3123351 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 3637208 33229113 ~ 33230483 (+) True LOC110486146

Expression Profile