RNA id: TU1322806


Basic Information

Item Value
RNA id TU1322806
length 538
RNA type TUCP
GC content 0.41
exon number 3
gene id G1159924
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28818734 ~ 28819448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaattacaattcaaatatttaattcacatctccaaaaatgcagttgtactgtaattatgaaacggttaattttttttattgaaatgcactgcagatatgagtgaaattgtgtaaagtaactccatcacactgtataaagctatgataaaatttttgatatttttactgaaaacaagacaaaaataccaagtaattttttgcagtgtgactccattaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagattaaacatgaacgggccaaaacggacatggcagcaggtcaaaatcaaatacaagaacattctgcagaatgcagtgaaaaagaatacccacagacaaggcacgggtggtgggtcaccaaaggctgaccttaccccagcagaggacatggccttggagctaaataaaggcaggcccgtcttagaggggatccctggggggaaagagacgagcataggttcctcccaagatgccacccgcttcattcaagtgtctggcagcactgtgttcctgttagagccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1322804 lncRNA upstream 4244 28814165 ~ 28814490 (+) True G1159922
TU1322797 lncRNA upstream 15236 28803255 ~ 28803498 (+) True G1159915
TU1322770 lncRNA upstream 30360 28786547 ~ 28788374 (+) False G1159901
TU1322774 lncRNA upstream 30360 28786547 ~ 28788374 (+) False G1159901
TU1322777 lncRNA upstream 30360 28786547 ~ 28788374 (+) False G1159901
TU1324701 lncRNA downstream 19045 28838493 ~ 28839683 (+) True G1161564
TU1324704 lncRNA downstream 21929 28841377 ~ 28841597 (+) True G1161567
TU1324729 lncRNA downstream 39424 28858872 ~ 28859106 (+) True G1161592
TU1324978 lncRNA downstream 345588 29165036 ~ 29165237 (+) True G1161821
TU1324920 lncRNA downstream 353307 29172755 ~ 29173426 (+) True G1161768
XM_036940704.1 mRNA upstream 43794 28768216 ~ 28774940 (+) True LOC110485131
LOC118938260 mRNA upstream 65255 28751512 ~ 28753479 (+) True LOC118938260
XM_036940703.1 mRNA upstream 96998 28716818 ~ 28721736 (+) True LOC118938259
XM_036940706.1 mRNA upstream 104945 28707695 ~ 28713789 (+) False LOC110487366
XM_036940702.1 mRNA upstream 210041 28604589 ~ 28608693 (+) True LOC118938254
XM_021557381.2 mRNA downstream 40087 28859535 ~ 28860605 (+) True LOC110486062
XM_021557384.2 mRNA downstream 348953 29168401 ~ 29172521 (+) True rrp36
XM_036940718.1 mRNA downstream 447170 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940719.1 mRNA downstream 447170 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940720.1 mRNA downstream 447170 29266618 ~ 29367748 (+) False si:ch211-126j24.1
TU1322364 other upstream 119913 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other upstream 319528 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 560760 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 693096 28119665 ~ 28125638 (+) True G1159631
TU1321052 other upstream 953027 27863508 ~ 27865707 (+) True LOC118938246
TU1325076 other downstream 479310 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 544604 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 674914 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 1011306 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 2294863 31114311 ~ 31119677 (+) True LOC110486104

Expression Profile