RNA id: TU1325047


Basic Information

Item Value
RNA id TU1325047
length 4322
RNA type TUCP
GC content 0.43
exon number 3
gene id si:ch211-126j24.1
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29266618 ~ 29370947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGGCGTCGACAAGAAGAAGGAAGGCGAGAAGCGAGACGTGGGCATCAAGAATACCCTGAAGAGCAACTTCCGCTCGCTGCAGGTGTCCCGCATCCCCAACGGAGGCGAGCTGACCCCTCCTCCCGGCATGGCCATGACCGTTGTCATGAAGGAGAAGAACAAGAAAGTGATATTCCTGAGTAAAAAGCCCAAGGAGAAGGAGGTGGACTCCAAGAGCCAGGTGATCGAGGGCATCAGCAGGCTGATCTGCGCTGCCAAACACCAGCACACCATGCTGAGAGtgtcCATTGACGGTGTGGAGTGGAATGACGTCAAGTTTTTCCAGCTGGCCGCCCAGTGGCCCACTCACGTCAAGCACTTTCCTGTTGGCATCTTCGGCTACACCAAGCCTGCCATGTGACATATCACTGCCACCTAAACCcaagtatgggtagctgcagcccaATATGGCGACCGGAGTATGGGCAAGCGGGTGTGTCGAAAGGAGTGGGTGTATGGAAAGCTAATCAGCTAATTGGGAAGATTTGTTGCCACTCAAGACCGTTTTGCATGGCTGATACGAGTCAATAAGCCACCGACCACTGCAGCGGTTTTGTATCGAGGTGCCTGCTGACCGGAGGTGCTTCCCACTGGGTAGCCGTGTCACATAGTCGCCAGCGGTAGCtaacatggcaacaacaacaaaaatctcccATGATTTTGTTTCCAATAGGATAGAAGCCTACATAAGAAATAACTAATATTGATAACCATTGAGATTTCACattgatacatacatacagtctacTCAATGGGCAGGGCATGAAGGGCAACAACACCTGGACACAGTGTCCTTGCTCCCGCTTTGCCAAGCACCACTGTCCCGGTGTGAGAAGTAGCTATTTAGTAGCCAATATCAGGGTGACAGTCACAGTGAGCATACGCATACAAGCAATAGTACACCCATCATCAGtacttttaatttaaaaaaatatataaacaattGTCAGCGAAATACGAATCAAACTCAAGTCCAAACTCTCTCAGTACGATAGTTGTGTGGTAAGAACCGGAACAAAAAAAACTGCATCATCAAAACCGTCTAACCCACTGGTTCTCAATCCAAAGgggtgcaccccccccccccccccccccccccccccccccctagcactacacagctgattcaaataatcaactcatgAGGCTTTGATGAtttaaatcaggtgtgtagtgcttgagcaaaaatctaaatgtgcacccctttgggtccccaggatcAGGATTGAGAACCAGTGGTCTAACCTATAGTAGAGCGctttcgacacacccactcctttccacacgcccactactttcctttcgacacacccactcctttccacacacccactactttcctttcgacacacccactcGCCCATACTCAGGTCGACATATTGGGCTGCAGCTACCCCCTTCTCTCTAAACCCTGACCCTAGAACAGCCATTATATCTCccatagagagagacaagctGGATTCCATTCTGAAAAATCACTCCCCTCCTTTCTGTTCTTTGATATTTGTATTTACTAGATATTGAGGATATAAATATGGTAATAGTTCCATCAAGTGAAGATTATAGGTCCTTATATGCTGGTTCCCAATGTTTCAAAATGAAATTATTAGAAATACATTTCTAAGTCTAAGTTTGAAATGAATCCAACTCTTTCAGTTTTCCAAGTTACCGAAGGTAGTGGGGAAAGCTGGGAGTAAAATCCAACAGATTGGAACCCAGCCGAGGCTGCTCTGACCAAGCAAAAAAACGTAAACAAACCCCCTAGTCCTTTTCCTGTGGAAACTGTCCAATTACAAACCTGTGTTCCCAGTATAAAATGGATGTTGCTGTCAACGTCAAATGTTACTGTTTTATCcaccagcaaaaaaaaagaagggAAAAAATGTATGCTGCCTTTTAAGTATAATAGTGTATATTGTGGTTAGAAACTTAGAATGGCCATTTGTAATGGCAGCTTTGTTGGCACTTTTTGTTACTATATTATTATTTCTGTGAAATCCTATATTGGTAAATGTCCTGTATATAACGCAAGAGGATTGAAGGGGTGCGTTGGAGTGTGTTCACAGTGTGTGCCGGGAGGCCGTGTGTGTTACTGATTTTTAAGGGAAAGGGTGGGATGCTAAGAGAGGAATTGCTGTGAAATTTGCAGAGGAACCCCTCTTGCTATGGAGAGATGTAATTTTGTTCTCTTTTTTTTTATTGAGAAAAGTGACTTAAGTTTTTGATACACTACTTTCAAGCTAGTATACTTGCCTTCTTAATTTAGAAGCACATTTTACGGAAACAGAATAGGGACAATCAGTAAACCAAGAAACTTGGCACTGTATAACGAGAGACGTTCATCAGAGAGTGGGATGTATCCTTAGACGAGATCAATGCAGGGACCTCACTTGTGAATTTGTGAAGAGGGACGTAGGTGCATGCAAGAATCTCTGGACACAAACGTgaataggagagaggagtgagagtggGGGAGGACAAGGAAAGAAGGAAACAAATGTCTTGTTCCCAGtgccctgctctaacacacctgattagCCTACTGTCTCTGCAAAGGGCTCAGCAGTGCAGTTTTCAGTAATACCTTTCTCACACTACTACTGAGTTGATCCAAGCTCTACTGCACTGGCCTGGTTAAGCATCCATTATAGTTGCTGGAATTGTGTTCCAAATGACCAGGTGGAAAGAAAATACAGTTAAACATAGTACAGTTTTGCTTGGTacagtagtgtgaaaagggtataaGAATTCCCCAGTGCGTTGCTCGGTTCTTAAACTATTTACCGGTGACTTTGAAGTGGTGTTCTTTTTTCTAACTTCATCCATTCTGAAAGACAGCAATCCCTTTACGAACCTAGCGTGCCGTATTCAACAATGAACAAATTGCTGTCAACTGTTCTCTGTTTTTATACTCTCTTTAAAGATGGACACACTCATAACGTTGAGTCAAAAAGGGCCCCAGGCTTCATTGGTTTTTAGGGAATTGCCAGGATTGACTCTGGGTACATTGTGAGGGACCATTTTAATGTCGGCAATGTTTCTGTATCGTGTGTTGATGTTGTTTCATGAGGTGTGTTTTCTCATAGACCTATGAGGGAAATAACGTCCTCCTGCCACTTCAGTCGAGGCTATGCAGGACACTGGAAGGAACTTGGAAGTCAAAACATCAGATTCCTGCCTTAGTTATTCCGCCTCCGTCTTTTGACCTGGTATGTTTGTGTTGTCTAATGTGACTTGACACGAAAATGCATTTCATTTGGATGAAAGTGTGTTTTGGAGActtttaagtgtgtgtgtttgtgtgtgcatgcgctgATAAGGGATACTGTGTAACCCCATTTGTCAATTTCAACCCTTTGAAAACTATGGCTTCACTTGGGATTAGATACTACATCTATAGTATTACATTTGATGTATTTTTTGTTCATCTTCACAGTGGTAGCTGATTTTAACAACAGTGTATGTTACAGTAAATTTTATCCTTCATGCATTGCTGACCGTCCAGGTGTCTCTTGTTTTTGCCTCGGAAAGAGGGAAGGTCTTCAGTCAATCCCACTCATTTCACTGTACAGTGTTCCACTATTTCATGATACCaataaacactatatatataaaagtatgtggacaccccttcaaattagtggattcggctatttcagccacacccattgctgacaggtgtataaaatcgagcagaGCCGAGTAATCTCCATAGTCAAACAtagacagtagaatggccttactgaagagctcagtgactttcaacgtggcactgtcataggatgccacctttccaacaagtcatttcgtcaaatttctgccctgctagagctgccctggtcaactgcatattcatgcccatgattttggaatgagatgttggacgaccaggtgtccacatacttttggtcacgtaGTGTATGTATACATAACTGATACATAAATATGTTCCACTACTTAATAATACATATTTATATTATAGCACTACTTTTGGGAAGTCAAGCGGCACCAAGTAATACCTAGAAAAACTGGACAGTCTAATAACTCCAACATTGAGCTTTACAGCTCTTTTAAGTATAGTTAAAGTTTGCATATGTTTTTGCACAAACATTCTTTTAAATGAGGTGACAGACAGTATTCTTTCTTTTTTAAATGAACCACTAAGAGAATACAACGTAAAAAATCTCTTGTTTTTATGATGTCATGTTTCATATCAGTTTTTGTTTCttgaaatatttgttttatttacatCTTACTCTTTATTAAGTTTTTGTATGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1325106 lncRNA upstream 1893 29361806 ~ 29362159 (+) True G1161937
TU1325102 lncRNA upstream 15630 29348158 ~ 29348422 (+) True G1161933
TU1325100 lncRNA upstream 16520 29347229 ~ 29347532 (+) True G1161931
TU1325051 lncRNA upstream 50088 29313518 ~ 29313964 (+) False si:ch211-126j24.1
TU1325083 lncRNA upstream 58327 29305423 ~ 29305725 (+) True G1161915
TU1325118 lncRNA downstream 48450 29419397 ~ 29428583 (+) False LOC110486070
TU1325120 lncRNA downstream 55329 29426276 ~ 29436445 (+) True LOC110486070
TU1325130 lncRNA downstream 66852 29437799 ~ 29438918 (+) True G1161961
TU1325133 lncRNA downstream 113852 29484799 ~ 29485607 (+) True LOC110486071
TU1325582 lncRNA downstream 121645 29492592 ~ 29493126 (+) True G1162361
XM_021557384.2 mRNA upstream 191531 29168401 ~ 29172521 (+) True rrp36
XM_021557381.2 mRNA upstream 503447 28859535 ~ 28860605 (+) True LOC110486062
XM_036940704.1 mRNA upstream 589112 28768216 ~ 28774940 (+) True LOC110485131
LOC118938260 mRNA upstream 610573 28751512 ~ 28753479 (+) True LOC118938260
XM_036940703.1 mRNA upstream 642316 28716818 ~ 28721736 (+) True LOC118938259
XM_021557391.2 mRNA downstream 2354 29373301 ~ 29409473 (+) False LOC110486069
XM_021557390.2 mRNA downstream 2947 29373894 ~ 29409473 (+) False LOC110486069
XM_036940725.1 mRNA downstream 2948 29373895 ~ 29397551 (+) False LOC110486069
XM_036940723.1 mRNA downstream 6462 29377409 ~ 29409473 (+) False LOC110486069
XM_036940722.1 mRNA downstream 6735 29377682 ~ 29409473 (+) False LOC110486069
TU1325076 other upstream 64396 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 544604 28818734 ~ 28819448 (+) True G1159924
TU1322364 other upstream 665231 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other upstream 864846 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 1106078 28252530 ~ 28257974 (+) True G1159684
TU1325585 other downstream 123415 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 459807 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 1743364 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 2630804 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 3344309 32715256 ~ 32722462 (+) True ifn2

Expression Profile