RNA id: XM_036940725.1


Basic Information

Item Value
RNA id XM_036940725.1
length 2543
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110486069
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29373301 ~ 29409473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCAATAACCAAGGAAGACATTTTGGATTTAAAACGAGCTCACTTAGTGGTTGACGAAAATATGCTCCGTCGGCAACACCATGTATCATTAGTTAGAATGTATCGTCAGATGGGTTTGTTTGTCAGTTGTGCGCAATGAAATGGCGTCGTTCTTGTGAAAAATTCCACGCATTTATCCCAAACCATATCGCCGCGCTCATCTACGAATTCTGTTAGGATAGGTTTCTTGCTGGCTcagctgtgtgtatgtacatCGAGAAGGCTCCTATAGTTCCTGGCTGTCCTACGAGGAATTAACCAATTTAGccTCTAAGTCCACCAGGCAATGTCAATAATGGTGTACCCCAGGGAGGACCGTCTGGAGAAGCTGTCCCAGGAGGAgatcatctccagcaccaagcTGGTGATCCAGGGCCTGGAGGCGCTGAAGAGCGAGCACAACTCCATCCTGCACAGCCTGCTGGAGACCATCCGCTGCCTGAAGAAGGACGAGGAGGCCAACCTGGTGCACGAGAAGTCCAGCCTGCTGCGCAAGTCAGTGGAGATGATCGAGCTGGGGCTGGGCGAGGCGCAGGTGATGATGGCCCTGTCTGCCCACCTGAACGCTGTGGAGTCTGAGAAGCAGAAGCTGCGTGCCCAGGTACGTCGGCTGTGCCAAGAGAACCAGTGGCTGCGAGACGAGCTGGCGGGCACCCAGCAAAAGCTGCAGAAGAGCGAGCAGAGTGTGGCccagctggaggaggagaagaagcatCTGGAGTTCATGAACCAGCTCAAGAAGTACGACGAGGATGTGTCCCCTACTgaggagaaagatggagagcCTCCTAAAGATACACTGGACGACCTCTTCCCCAATGATGAGGAGGACAACAGTCAAGGAATGCCTCACCAGCATAACAGTGCAGCGGTGGCCGCAGCCCAGCAGGGTGGCTATGAGATCCCGGCCCGCCTGAGGACCCTCCACAACCTGGTGATCCAGTATGCCTCCCAGGGCCGCTATGAGGTGGCCGTGCCCCTCTGCAAGCAGGCTCTGGAGGACCTGGAGAAGACATCCGGACACGACCACCCTGACGTGGCCACCATGCTCAACATCCTGGCCCTGGTCTACAGgGACCAGAACAAATACAAGGAGGCGGCTCACCTGCTCAATGATGCACTGTCTATCCGGGAGAAAACCCTTGGGAAAGACCACCCTGCGGTGGCTGCAACACTGAACAATCTGGCAGTGTTGTATGGCAAGAGGGGGAAGTACAAGGAAGCTGAGCCCCTTTGCAAGAGGGCTCTGGAGATCAGAGAGAAGGTGCTGGGCAAGGACCATCCTGATGTGGCCAAGCAGCTGAACAACCTGGCCCTGCTGTGTCAGAACCAGGGCAAGTACGAAGAGGTGGAGTACTACTACTGCCGTGCCCTGGAGATCTACGAGCGCAGGCTGGGCCCTGACGACCCCAACGTGGCCAAGACCAAGAACAACCTGGCTTCGTGTTACTTGAAGCAGGGGAAGTACAAGGAGGCGGAAATCCTTTACAAAGAGATTCTCACCCAAGCTCACGAGAAGGAATTTGGATCCGTGGATGCTGAGAACAAGCCCATCTGGGTGCATGCCGAGGAGCGGGAGGAGTGCAAGAGCAAAGACGGCTATGGAGATTATGGCGGCTGGTATAAGAATTGCAAGGTGAACAGCCCCACTGTCAACACCACTCTGCGTAATCTGGGAGCTCTGTATCGCCGGCAAGGCAAGATGGAGGCCGCTGAGACCCTGGAGGAGTGTGCCTTGAGGTCCCGAAAACAGgGTGTGGTGGAGctgcagagagacggagacaggaggaggagcagggagagTCTGAGCAGCGTAAAATATGAGAGCGCCTCCGAAGCGGGGGAGGACGGCAGCGTGGACTGGAACGGGGCCTAAATCAGCAGGATGACCTTCCTCAGCCTCACTCCTCAACCAATCAAGCCAATCGAATCAAAATGGATGTCTCTTGTCATTTCCTCTGTGTGAAGCCTCTTCTAATCTTTCATAGAGGACTCCTCCTTCATCCCCACAAAACCGATTATCCCTTTTACCTCCCAATCTTTCTCTTCCCATCCTTTCGGGGTCTCTCACTCCCATGCATGTTCTCGATCTTCTTGCGTTTTCCACACTCTGCCCCTCTTCTCCTGGTCTCTTGCCCTCTTCCTCTTGCGTTTTCCACACACTGCCCCTCTTCTCCTGGTCTCTTGCCCTCTTCCTCTTGCGTTTTCCACACTCTGCCCCTCTTCTCCTGGTCTCTTGCCCTCTTCCTCTTGCGTTTTCCACACACTGCCCCTCTTCTCCTGGTCTCTTTCCCTCTTGCGttttctttatccctctctctagctctctcgtTCATGCCTACTCATTTCTCTCATCATGCTGCATCACATTTTCagcctttctcttcctctatccctgactctccctttctcttcctctatccctgactctccctttctcttcctctatccctgactctccctttctcttcctctatccctgactctccctttctcttcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1325106 lncRNA upstream 11736 29361806 ~ 29362159 (+) True G1161937
TU1325102 lncRNA upstream 25473 29348158 ~ 29348422 (+) True G1161933
TU1325100 lncRNA upstream 26363 29347229 ~ 29347532 (+) True G1161931
TU1325051 lncRNA upstream 59931 29313518 ~ 29313964 (+) False si:ch211-126j24.1
TU1325083 lncRNA upstream 68170 29305423 ~ 29305725 (+) True G1161915
TU1325118 lncRNA downstream 21846 29419397 ~ 29428583 (+) False LOC110486070
TU1325120 lncRNA downstream 28725 29426276 ~ 29436445 (+) True LOC110486070
TU1325130 lncRNA downstream 40248 29437799 ~ 29438918 (+) True G1161961
TU1325133 lncRNA downstream 87248 29484799 ~ 29485607 (+) True LOC110486071
TU1325582 lncRNA downstream 95041 29492592 ~ 29493126 (+) True G1162361
XM_036940718.1 mRNA upstream 6147 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940719.1 mRNA upstream 6147 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940720.1 mRNA upstream 6147 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940721.1 mRNA upstream 6147 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_021557384.2 mRNA upstream 201374 29168401 ~ 29172521 (+) True rrp36
XM_021557393.2 mRNA downstream 21812 29419363 ~ 29428566 (+) False LOC110486070
XM_021557394.2 mRNA downstream 46572 29444123 ~ 29485813 (+) False LOC110486071
XM_021557398.2 mRNA downstream 100511 29498062 ~ 29591905 (+) False LOC110486072
XM_021557399.2 mRNA downstream 100511 29498062 ~ 29591905 (+) False LOC110486072
XM_021557400.2 mRNA downstream 100512 29498063 ~ 29591905 (+) False LOC110486072
TU1325047 other upstream 2948 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 74239 29298758 ~ 29299656 (+) True G1161908
TU1322806 other upstream 554447 28818734 ~ 28819448 (+) True G1159924
TU1322364 other upstream 675074 28338985 ~ 28698821 (+) True LOC110513252
TU1325585 other downstream 96811 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 433203 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 1716760 31114311 ~ 31119677 (+) True LOC110486104
TU1328699 other downstream 2604200 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 3317705 32715256 ~ 32722462 (+) True ifn2

Expression Profile