RNA id: XM_036941565.1


Basic Information

Item Value
RNA id XM_036941565.1
length 3864
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110516592
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55209614 ~ 55242150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAGGTAGAAATGACATGGGAATCTATTAAAAATAACATGTTCTGAATATTCACATTGGATTTCAAGGGTATCTAGAACAACAATATCTACAGAATGTGTGCAATATTTACTTTGGCTTAGATATGAGTCTTTTCCACCTCTGAATCGTCAATGTCGTATAAAAGCTTAAACCAGGTCGAGCCCTCAACCCGTCTCGTTCGATCGTACCCCATCACAGcacctaacccctgaccccaagTAGCTCAGACTGGTCGAAGTTGGTAAATATTTCACATCCTTCTTCACAGCAGTGCTGTATAGACCCGGGCTAAGCACTGTAAACATGTTCCTGAGAGGGAGAGTAGGAATCTAGGGCACTATTATCTGGCCCCTTTTCTTCGAGCAGAAGCAGAGATCTGTGGatggagagagctggagagagaaagagagagagagagagaggagatatttCGTGCTTTATTCAGGCTGCTGGAGAAGACTAATTCTTAATACTCCTTTCTAGGAGCTAGACAATCTCACAGGGACCTTTACTAtaatacacaaccacacacacacacttcatacactCCCTCAGCACCATGTTGGAGGAGAAGAAGACCAAGGTGAAGATCACGTTCTTTATCATCCTGGTGGGCATCTCCTGCATGCTGGCTGCCATGGTGACGGACCACTGGACTGTACTGAGCCCGCCGTTCAACAAGTTCAATGCCACCTGTGAGACGGCCCACTTTGGCCTCTGGAAGCTCTGCATGAAGACCATCTTCATGGTGGAGGAGGACCCTGAGGGCCAGGGCTGTGGCCCCATCAGTCTGCCCGGAGCCAAGAACTGCTCCTACTTCAAACACTTCACTAAGGAAGAAGAGGCCAAAGGGTTCGAAGCCAAAACTCAGAAAGagTACAACCTCTCAGCAGCGGCCATTGCTGTGTTCAGCCTGGCCTTTATGACCCTGGGGTCGCTGTGTGTCGTGTGCTCCTTCGGGAAGGGGAGGGACTACCTGCTGAGGCCTGCTGGGATGTTCTTTGCCTTCGCAGGTCTCTGCATCATCATCTCTGTTGAGGTGATGCGGAACTCCACCAAGCGGATGATTGACAGCGAGGAGACCGTCTGGGAACAGTACTACTACTCCTGGTCGTTTGAATGTGCCTGCACCTCCTTCGTCCTCCTGGTCTTCAGTGGTCTCAGCCTGTTGATCCTCTCCATGCCCCAGATGCCACGCAACCCCTGGGAGACCTGTATGGACGCAGAGCCAGACTCCATGGAGCCTTtagactagtagtagtagatcAGATTAGACCTGCCCAGATCAACCCCTGGGAGACCTGTATGGACGCAGAGCCAGACTCCATGGAGCCCTtagactagtagtagtagatcAGATTAGACCTGCCCAGATCAACCCCTGGGAGACCTGTATGGACGCAGAGCCAGACTCCATGGAGCCCTtagactagtagtagtagatcAGATTAGACCTGCCCAGATCAACCCCTGGGAGACCTGTATGGACGCAGAGCCAGACTCCATGGAGCCTTtagactagtagtagtagatcAGATTAGACCTGCCCAGATCAACCCCTGGGAGACCTGTATGGACGCAGAGCCAGACTCCATGGAGCCCTtagactagtagtagtagatcAGATTAGACCTGCCCAGATCAACCCCTGGGAGACCTGTATGGACACAGAGCCAGAGTCCATGGAGCCCTTAGACTAGTAGTAGACTCCATTAGAACAGACCAGACTAGTCTAGACCAGGGGAATCTTCAACAAAGGCTGCTAAAACCATACATGTTTTTATAGAATCCAACTGAAGATAAACTAAATTGAGGCTGGTGGTGGGGGCAACAGAGTTAAGGATACAGATGAATGAGAGTGGGGCACCCCGCCTAAGTAATAGTAGAAGGGGAAACACTGCACTACACTGCTTGGTTTTAAGTGTACAGATAAAGATGTAAGGCAGGATCTCTGAGCAGTCCTTGAGGGCCACAGATTTTCCTTTCTTTGGTCCTTAACTGATACATTTCTGTCATTGATTGCAGAGAGTGTCTGCTCTCCTGGTCCATATCATCCGTTACTAAGCAACAGACACTGTGGCACTTGAGGACTGGCCTGATTTAGGGTGCGTTAGTAAATTCACCATGGCAACTTACTTCGAAATTCAGAACACTCTGGTTGGAgagtgccagagcgcagaatcaTTTATGAATTTACGAACTGCCTAAACTCAGTTGTTATGACAGATTTAAGTAAACATTGGCTAAAAAActgaattaaattgttgccagtaaCACAGTTACAGTCACTAACCCTCTTGATAACATGGAAACACTCTAGCACTAATAGCAGCTCTGCAAGGGTGAGTAACATGTTCAGAGTgaagtgttctctcatttgtgtctggaagtagctagcaagcaagctaAGCAAGTTTAGCCAGTTGGCTTGGGAGCTTGAAGGCCGATGTAAAGTCAGAatgctcagatcaaccctacacctcggccagagtgtccagtgtgcactctgaacgctccgagatcGAAACACTGAAGTtatgaacggacaatctgacaacactctgaatttacaaacactcaaAGCACACTCCGAGTGCACTCTGACACTCTaaagtgaatttacgaacgcacctaTAATGTACAGTATTAAAATGTGGCTTTTGCTATAAAATGaccacagagacagaaagagctaAAGAACATGGCAACATAGTGAGCTGCTACTCTGTGTAATTTAATATAGTTTGAGCTGTCTTGTACACGTCTAATATACATTTCCGCTCTAGCGTTCTACATTTTTGTAATGAAATAAGTTAATGCTTTAATGAACGTTGCATTGTAAATGTTCACCCCTCCAGGCAGCTACAAACAATGTGTATTTATTTAACATGTATCAATGGATTAAACCATATTGAAGCTCCAGTGCAATGCCAGTACACAGATCTACTGTATTAGTTAGGGAGCTACACTGCTGCTTGTTGTTTACAGAGGAAACCTAgaatgtacagtgtgtatacagTACTTGTATGTTTTAAACATGGGCCTATGAAGATGATAGATATGTTGTTTTGTGTTCAATAGTAGCTTCATCAAACAATCCATTCCAATCTAGCTTGAACACAAAACATTCAAGCCCACCACAGTGATTATTGGACAGATACATTGTCTTCACTGAATGGCAATATCTCCCATTGTGTACCTCTCCTCAtattgtattctctctctctctctctccctctccctctctactgtctaattatctatctatcccccctctcttcccatcTGTTTCACTTAAAGTTCCAAAGCAAAAGATGAAGTGTGAGAATGTTTCAAGGGTGTTGTGATAAATTCCTTTCTTTCTATTGACACAGGACAGTTGTTGCATAATGAATTATCTTCAAAGTATTATAGCCAGCTGAACAAGTTAAATTGTAGTGATTTTCAGTCAACAAGCGACAGGCATGTTCTGTTTTTGGGGAACACTGTTGTATAGGTACTGATTTCAATAGCTACAAAGCAGTAATGTTCTGTGCTGACAGATTCAAGTACATCTAAACACAAACACCCCTTGTTCTCACCCATCTAAGCACCGAACCCATTGTTTTGTGCTAGGTTCTCtgacaggtacagtataatatatattttctacAAGGCCTAACCATTGCTGTTTTGCTGTGAGCACATAGTCATAGAGTTATTAAAGAGGCAATCTGgagttcaaacaacaacaaaggaacACCCTGCCACTGATTTGGTAAACAGCTAAGGGATGAGACTCGAGATACAATATGTGACTATTCTCAATGtgtagacagagctatggatgcaaggactggccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355678 lncRNA downstream 2416 55205846 ~ 55207198 (-) True G1188632
TU1355509 lncRNA downstream 9263 55199094 ~ 55200351 (-) True G1188490
TU1355491 lncRNA downstream 33347 55176030 ~ 55176267 (-) True G1188474
TU1355486 lncRNA downstream 39198 55170114 ~ 55170416 (-) True G1188469
TU1355484 lncRNA downstream 40567 55168808 ~ 55169047 (-) True G1188467
TU1355688 lncRNA upstream 1395 55243545 ~ 55254482 (-) True G1188638
TU1355724 lncRNA upstream 42296 55284446 ~ 55288214 (-) True G1188669
TU1355730 lncRNA upstream 62487 55304637 ~ 55304886 (-) True G1188675
TU1355759 lncRNA upstream 84923 55327073 ~ 55327354 (-) True G1188693
TU1355762 lncRNA upstream 97623 55339773 ~ 55340366 (-) True G1188696
XM_036941563.1 mRNA downstream 50425 55029537 ~ 55159189 (-) False LOC110514491
XM_036941564.1 mRNA downstream 50425 55029537 ~ 55159189 (-) True LOC110514491
XM_036941562.1 mRNA downstream 183149 55022619 ~ 55026465 (-) False LOC110486836
XM_021558657.2 mRNA downstream 193086 55013855 ~ 55016528 (-) True LOC110486834
XM_036941560.1 mRNA downstream 198320 55003960 ~ 55011294 (-) False LOC118938330
XM_021558673.2 mRNA upstream 12547 55254697 ~ 55276671 (-) True LOC110486847
XM_036941567.1 mRNA upstream 47000 55289150 ~ 55293420 (-) False aimp2
XM_036941566.1 mRNA upstream 47000 55289150 ~ 55293431 (-) True aimp2
XM_021558675.2 mRNA upstream 70140 55312290 ~ 55316734 (-) True LOC110486849
XM_021558678.2 mRNA upstream 79449 55321599 ~ 55324310 (-) False pvalb1
TU1355395 other downstream 183166 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 183166 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 378292 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 378292 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 460956 54744425 ~ 54748658 (-) True LOC110486825
TU1355745 other upstream 192666 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 192991 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 670074 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 670097 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 670097 55912247 ~ 55915885 (-) False G1189279

Expression Profile