RNA id: XM_021558675.2


Basic Information

Item Value
RNA id XM_021558675.2
length 908
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110486849
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55312290 ~ 55316734 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACAAGGGCGTTACTGATGTCCACAGTAGTCAGTCTCCTGCCCATGGGCGTTATAAAGGGTAAAGGTTAATTAGTTAGGGAAGAAATTTGATCAGGGGCGGGCAGTTAAAATTTGATACTCAGACAGGTAATTCAAGCATTCCCTATTGTCACCTCAATCAGACCTATATAAATCGTCTCTGACGGACACCAGTCACCGCATAGCCTTACTCGTCTCTTTTGGATCAACGACCGGGCAAGAACCTCAACGCGGATTAAAATGTCGCTCTCATCTATCCTTTCCGCTGATGCCATAGACGCTGCTATGAAGGACTGCCAAGCACCGGACTCCTTCAACTGCAAGAAGTTCTTCCAGCAGTGTGGCTTGACCAAAAAGAGTCCCGCGGAGGTGAAGAAAGTATTCGGGATACTGGACAACGACGCCAGCGGCTTCATTGAGGAGGAGGAACTCAAATTCTTCCTCCAGAGGTTCAACCCCGGGGCCCGTGTCCTGACTGAAAAAGAGACCAAGGCCTTCATGTCTGCTGCTGATGATGACAGCGACGGCATGATTGGAGCAGATGAGTTCCAGGCCATGGTCCTATCCTGAATACCTGTACAACATCCTCCATACCTCTTTCTCCCCACAGAGTTCCAGGCCATGGTCCTATCCTGAATACCTGTACAATACCTCTTTCTCCTCGCCCCACTCCAGCGCTAGGATTTATAACTTTACTTTTCCATCTGTCAATCTATTTGGAAACATGTATTCTTTTTTTGCAAGCCTCCGGTTCAGACTACCTACAACTCACTGATTTTTATTTTTGCTTTTTGCATACGTTTTAGACAGGTCATATTATTGCCCAACATGTATCACTTACCAAATTACtgagaaaataaaataataaaatgcatTCTAAAATCTC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23925 OCM; oncomodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355730 lncRNA downstream 7404 55304637 ~ 55304886 (-) True G1188675
TU1355724 lncRNA downstream 24076 55284446 ~ 55288214 (-) True G1188669
TU1355688 lncRNA downstream 57808 55243545 ~ 55254482 (-) True G1188638
TU1355680 lncRNA downstream 100957 55209692 ~ 55211333 (-) False LOC110516592
TU1355678 lncRNA downstream 105092 55205846 ~ 55207198 (-) True G1188632
TU1355759 lncRNA upstream 10339 55327073 ~ 55327354 (-) True G1188693
TU1355762 lncRNA upstream 23039 55339773 ~ 55340366 (-) True G1188696
TU1355783 lncRNA upstream 55465 55372199 ~ 55372529 (-) True G1188717
TU1355739 lncRNA upstream 113000 55429734 ~ 55432178 (-) False G1188682
TU1355741 lncRNA upstream 113000 55429734 ~ 55432178 (-) False G1188682
XM_036941566.1 mRNA downstream 18859 55289150 ~ 55293431 (-) True aimp2
XM_036941567.1 mRNA downstream 18870 55289150 ~ 55293420 (-) False aimp2
XM_021558673.2 mRNA downstream 35619 55254697 ~ 55276671 (-) True LOC110486847
XM_036941565.1 mRNA downstream 70140 55209614 ~ 55242150 (-) False LOC110516592
XM_036941563.1 mRNA downstream 153101 55029537 ~ 55159189 (-) False LOC110514491
XM_021558678.2 mRNA upstream 4865 55321599 ~ 55324310 (-) False pvalb1
NM_001195410.1 mRNA upstream 5137 55321871 ~ 55323337 (-) True pvalb1
XM_036941582.1 mRNA upstream 17725 55334459 ~ 55341851 (-) True LOC118936431
XM_036941576.1 mRNA upstream 78130 55394864 ~ 55418872 (-) False LOC110519575
XM_036941577.1 mRNA upstream 78130 55394864 ~ 55419060 (-) False LOC110519575
TU1355681 other downstream 99575 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 285842 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 285842 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 480968 54823912 ~ 54831322 (-) False LOC110485228
TU1355745 other upstream 118082 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 118407 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 595490 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 595513 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 595513 55912247 ~ 55915885 (-) False G1189279

Expression Profile