RNA id: XM_036941576.1


Basic Information

Item Value
RNA id XM_036941576.1
length 5222
RNA type mRNA
GC content 0.55
exon number 25
gene id LOC110519575
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55394864 ~ 55419061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgtgttgaTGTGTTCGGGGACAGGACGAAAGTGGAGTCTATCAAGTCAGTGATACTTTGCAGGACAGGACTAGATGCATTGAAGTTATGTTTTGCTGTTTGTCATCACCTCAAACCACAGTCGGTTGCCCGAAATATTCCTATTTCAATTTTCCTATTGATATTGAATTTCATTCCAGGCTGGGGCGCATCAACATGCATGGCAGGTGTCCGGTTTTAACGCACCTGGGTGTCTGATATCATGACGCGTCTTATCAGTGTCCATTGACAACCGTTTGTAGGCTTTCGTTATTCAGGTGCAAGCCGCTCCTTACTCCGTTATTCCTCGGTGCCATAGGCTATGAAATCCACACAACCAGGCTACTCTAAATGTTTAAGCAGCCTGCCCACACCGTTGACAGCATATCATTGGGACCGATGACATATCCAATATTCCCATTCCCAGTATTTATAGTGTTTAGTCTTCCCACACGGCCGTATCTCCACGTTGCAGCACGTGTTTACCGGAGATGAAGGCGACCACCTGTGGTAATTAACTGTGTAGCGTGCTCCAAACACTTGTGTGTAGGCCCAACGGAAGAAGGCTGCGAGAAACGTGTTACAACTGAAAAATACTAGAGGCTTCAACTGTGATAAAGCCGTTTAAAACAagtgtacaGCCCCATCATGTCCAGCTCGCTGCTATGGGCAGTGGACGTATACGGGAAGGTGTACAGCCTATCCACCACCAGAGGGCGCTGGGAGCGTGACGAGGACACCCTCCTGGAGCTAAAGCGTGTTACCGCTGGACAGAGGTGCAGCTGGGGAATTGGCTGTGACCACCATGTTTACCTCAATATCGACCCTGGGGAGGTGCCAATTCGCTATCGAGAGGAGACATATGAGAACCAGAGGTGGAACCCAGTGGACGGCTTCACTGACGTGCTGCTGCCCACTGACCGTTGGGCCTGGAGTGACCTCACAGGGGTGACCGCCAAGCCGCTGCACAGCTTCCTGTTGCCCTCAAACAGCTGGGAGTGGGAGGGGGACTGGTACGTGGACCAGGTCTGCGCTGGAGGAGACCCCATTGAAACTGGGGGCTGGGAGTATGCAGTGGACTTTCCTGCTAACTTCTCCAGAGAGAAGAAGTGGAACTCGTGTGTTTGTCGCAGGCGATGGATTAGAGACAGGATATACAAAGCCAGAGGCTCTTGGACCAAGATCCCCTTGGACCACCCCAAGcagccccctctccccctcagtgACGTTAGCTGTGGAGGCTGGGAGATGAGCGACCAACCCGGGCGATATCACTTCCTGTGGGGTGTGTCCCAACAAGGACAGGTGTGGTTCAGGAGTGGCATCCTGCCACAGGTCCCCGAGGGCCAGTGCTGGGAGCAGGTGGAGGCCCCCAGGGAGGTGGCCCAGATCTCTGCTGGACCAGGGGACTTGCTCTGGGCTGTACTCTGGGACGGACAGCTACTGGTCCGTACAGGCATCTGCCTGGACAGCCCTACAGGTTCCTCCTGGGTGGTGGTGGATTCTCCCCCAGTAAAGGAGGGCGGAACCATCCATGTTGCTGTGGGGGTCAGCGTGGTGTGGGCTGTCACTAAGGACTACAAAgtgtgGTTTCGGCGGGGGGTGAACTCCCATAACCCCTGTGGCTCAGGATGGATCAGCATCGGTGGGGAGATGATGATGGTGGATGTGGGACTCAATGACCAGGTGTGGGGAGTTGGAGAGGACCGTGGTCTGTATTTCAGGAAGGGTGTCACCCCATCGGAGCCCAGTGGTAGGGGCTGGATACCTGTTTCTGCCCAATGGGGTCACAGCAAAGAGATGGTCCAACCCAGTGCTGGCTGTGAGTTCGGGGGACAGGTGACCAATGCTTCCCATGGCTCTGTTCTGACCTGCGAGGACTCAGGGGACACAGAGCTCCTCCTCACCACCATCCCCCCAAGGCCACAGGACACCCCCAAAGCCTTCATCCCCACCAGTGACAGCTTCATCTCCAGCCTGGTGGCTGACCGTGAGCCCCTGAGGACCCCCACACCCTCCCCCAAAAAGCCACCCCAGGGGAAGGACAGAGAGGCCACCCCAGCCCCGATGTGCAATGTGGACCTGGACGCAGCTCAGAGCCCCCAGGGAGAGGCATCTTCTCTTGGCAGGGCAGGGGACGTGGGACCCCCCACCTCAGTGGCCACCTACCCCCTGGGTCTGGAGCCCTCTCTGGGTTTGGGGGAGGAGGACGGGCCTGTATGGGCGTGGATCTCTGGCGGAGGCTGTGATGTGGACCATACAGCTCAGATGACCTGGCTCAGGCCTGCAGACCCATGCTCCACTGCCCTGTCCATCGCCCCTGTTGAACCAGAAGCCTCCACGTCTAGGAAGGCTGAGACCACCACCAGTAAGGAGCCAGTGGAGAGAAGCTCGTCTGTGTGGGTGAGGAAGGGCAGCATGCGCTGGTGGAGGGACTGGAAGCCCTATCGCTGGGTGGATGTGGGCGTGGCCCTGGAGCAGTCCACCAACGTCAATGGCAAGAGGGATGCCATCTTCTTCATCTACTTCACCCAGTATGATGAGAAGAAGTACCTCCATGTGTTTATAAGTGATGTGACGGTGCTGGTTCCTGTGCTCAAGGAAAACTCCCATCATGCCTTTGCGGTGTACACGTCAGATAGCACAAAACAAAGATGGCCGCTGATCCTGGCTGCACAGACTGAGAAGGACATGGCTGACTGGCTGTCCCTGTTGGCTGGGTGTTGCTGCGAGGCCAGAGGGATCAGGGGAACCCCTTCCCGACAGGCCCTGTGGTCAGTCACCTCCAAGGGGGACGTGATGGTCCACGAGCCCTCTCCCTGTCTGGAGGCCCCGGCACACACCTTGCCCTGTGACATGATGTTTTGGCTGCAGGTCCCGGGCCACCTGCGCTGTGTAGAATCTAACAGTCTGGGTGTGGTGTGGGGGATCGGGTATGACGGCACCGCCTGGGTCTACTCTGGTTCGGGCAGCGCTGCTGAGGAAGAGCCCCCTCAGGGAGACAGGCGTGtcctgcacacacagacagatgaaagGACTGTGTACATCTATGAGAACCAGCGATGGAACCCCATGACTGGATACACAGACAAGCTTCTCCCCACAGACCGGTTCCCGTGGAGTGATGACAACGGCTTTACAGAGTGCACCAAGTccaccacccaccctccctcgCCTCAGTGGAGCTGGGTGACAGAGTGGGCCGTGGACTTGGCTTTCTCAGGAGGGACAGACCGAGAGGGGTGGCAGTATGCAGCAGACTTCCCTGTGACGTTTCATGGCAACAAGAGCCTGAAGGACTTTGTCAGACGTCGGCGCTGGGTCAGGAAGTGTAAAATCACCCTGACTGCCCCATGGCAGGAAGTCCCGCCCATCCCCTTAAGTGACATCACAGTGTTGCCGTGCCTGGCTCAGAGCAGTATGGAGCAGGTCTCAGTCTGGGGCCTCAGTGACAAGGGGGACGTCCTATGTCGCCTGGGGGTCACCCCCCAAAACCCTGCGGGTTCCTCGTGGCTCCACGTGGGTACTGACCAGCCCTTCAAGTCCATCTCCATCGGGGGAGGTCACCAGGTGTGGGCCATTGCCAGGGACAGAGCTGTGTTCTACAGGGGCTCAGTGTCTGCCAGAAACCCTGCAGGAGAGTGTTGGTACCACATCCCTTCCCCACCCAAACAGAGCCTCAGACAGCTGTCTGTAGGGAGAACCTCGGTCTACGCCGTGGATGAAAACAGTAACCTGTGGTACAGACAGGGCCTAACTCCCAGCTACCCCCAGGGCTCAGCCTGGGAGCTCCTCTCCAACAATGTGACCAAAGTCTCAGTAGGACCTCTAGATCAGGTGTGGGTGATAGCAGACTGGGTCCCAGGCTGCCCCAGTGAGCTGTCTGTTCCTGGAGCTGTCTGTCACAGGCTGGGGGTGGGACCTATGCAGCCCAAGGGCCAGTCCTGGGACTACGGCATCGGGGGAGGATGGCAGCACATCAGTGTGAGAGGGAACTCCACAGAGGCTCTACGTGCCACCCCGGCCCTTACTGGATCCACCCCCCGTAGCCCACTTCCTGCCAGGCCAGTCCTTACTGGATCCACCCCCCATAGCCCACTTCCTGCCAGGCCAGCCCTTACTGGATCCACCCCCCGTAGCCCACTTCCTGCCAGGCCAGTCCTTACTGACACCACCGCCCGTAGCCCACTTCCTGCCAGGCCAGTCCTTACTGACACCACCGCCCATAGCCCACTTCCTGCCAGGATACCTTTGTCACAGGAGAACGGGAACTCTGTGGGTCTGTAGGGTCTCTACTAACCCGCCCCGTTCCTCCATCTCTACCCACAGCCCTGTGTGTGCCTGATTCCATTTCCAATACAACCCAGCACAAACATGGTAATGTTGGTCTAAATGTAAAGAGCATGAATTGGTTGGATATTTAAATCACTTAGTGCTGGGCTGAAACATATTGGCCACCTTTGACCCAGCACTGGAAGTATTAGTGCTTCTGTCAGTTTATCCATTCCACAGTCTGAACTTGTGGCAGGTGCTAGGAGAAGTGGTTAGGGTGAGAAATGGAACCGAGCCTGTGTCCCATACCAACACACGCCACTCCCTTGGACCTCCGTGTAGTCTTGCTTTGTATGATTTTGTTCTCATTTGCCTAGTTGACACACCACCTTTTCATCAGTCTATGTATGCTTTGGAATTTATTTGTTTACTGTCATCTTGGTTTGGCCTGCATGATGTTTGTAATGTAGTGGTTGAAGTAGCTTTTTCTTCAGAACTAAAAATATCAACTCTAGTCATAGCTCTGGGCTTCCATGACAAggattatttaatacatttaccAGATTTTTTTCCTCAGATGGTTAAAAACAATATGGACCTGAATAGCATCTATTTGCTGTGTAATGTATTAAcatccagaatgttatgaatagGACCAGGAGTTTTCTGCTCAAGTCACATGATCTGCAGACGCTCTAGTTATTATCCCTGGTGGATTACTTCAGTATTCCATGCAGATACTGAGGTCAGGATTCAAACAGCACTGTGCCTACATTGCATTACACTTATGACAATTTCCTGGATGTTAGGCGACGTCAGCTACCTTTAGAAGTGCAGCGTAATGTTTGAATTCCTGTCTGAGTTTGCTGTGGCCGTGACTGTTCTCTTACAAGGACCGACAACTGAAATAAATTCCAAAACAGCTCTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355783 lncRNA downstream 22335 55372199 ~ 55372529 (-) True G1188717
TU1355762 lncRNA downstream 54498 55339773 ~ 55340366 (-) True G1188696
TU1355759 lncRNA downstream 67510 55327073 ~ 55327354 (-) True G1188693
TU1355730 lncRNA downstream 89978 55304637 ~ 55304886 (-) True G1188675
TU1355724 lncRNA downstream 106650 55284446 ~ 55288214 (-) True G1188669
TU1355739 lncRNA upstream 10862 55429734 ~ 55432178 (-) False G1188682
TU1355741 lncRNA upstream 10862 55429734 ~ 55432178 (-) False G1188682
TU1355742 lncRNA upstream 10862 55429734 ~ 55432178 (-) False G1188682
TU1355743 lncRNA upstream 10862 55429734 ~ 55432178 (-) True G1188682
TU1355814 lncRNA upstream 98318 55517190 ~ 55517458 (-) True G1188744
XM_036941582.1 mRNA downstream 53013 55334459 ~ 55341851 (-) True LOC118936431
XM_021558678.2 mRNA downstream 70554 55321599 ~ 55324310 (-) False pvalb1
NM_001195410.1 mRNA downstream 71527 55321871 ~ 55323337 (-) True pvalb1
XM_021558675.2 mRNA downstream 78130 55312290 ~ 55316734 (-) True LOC110486849
XM_036941566.1 mRNA downstream 101433 55289150 ~ 55293431 (-) True aimp2
XM_036941579.1 mRNA upstream 16264 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA upstream 16264 55435136 ~ 55509918 (-) False LOC110485238
XM_036941581.1 mRNA upstream 114375 55533247 ~ 55552500 (-) False LOC110538789
XM_036941583.1 mRNA upstream 610549 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 610549 56029421 ~ 56036822 (-) False LOC110486851
TU1355681 other downstream 182149 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 368416 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 368416 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 563542 54823912 ~ 54831322 (-) False LOC110485228
TU1355745 other upstream 15944 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 16269 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 493352 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 493375 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 493375 55912247 ~ 55915885 (-) False G1189279

Expression Profile