RNA id: XM_036941580.1


Basic Information

Item Value
RNA id XM_036941580.1
length 3010
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110485238
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55434816 ~ 55509918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAATGACGTCGAACAATAACACCCTGCCCGCCTACCTTTCCCACCAACCGACTCACTGTTAATCGAAGCAGAAGTTTGACAGCTCAGCTTTTACCCCAGGCCGTCCTTTGAGAACGTACGGTTGCACTTCACTTTTGCCTTCGGAAGAAATTGTCACTCCCTTTTTCATGATCGACTACTGTAGAAGGGAAAGACAGGGATATAACCATGTCGAGGGACCCTGAAGAAGTGAACAAGCTCACCGAAAGTACATACAAGaaTGTAATGGAACAGTTCAACCCTGGGCTCAGGAACCTGGTCAACCTGGGGAAGAGCTATGAGAAATCAGTGGCAGCGATGAGCCTGGCTGGAAAGGTGTACTTTGATGCGGTCTCTAAGATCGGAGAGAATGCTGcggtctctcctgtctccagggaGTTGGGCGTTGTGCTGATGGAGATATCCGAGGTCCACAGGAAAGTTCACCTTGAGCTAGAGGAGAATTTTAAGAGGTTTCACAGCGAGATAATAGCTGAAttggagaggaagacagacatgGATGTAAAATACATGAcaGCCACCTTTAAGAGGTACCAGACAGAGCACAAGATGAAGCAGGACTCTCTGGAGAGGTCGCAGTCTGACCTGAAGAAACTCAGGAGGAAGAGCCAGGGCAAGAACACCAACAAGTACGAAAACAAGGAGAGTGAGTGCCTGGAGACGCTGAGGTCAGGGCAGATGGACATGCAGAAGTTCATCGCCGACGGCTGCAAGGAGGCTCTGCTGGAGGAGAAGAGACGCTTCTGCTTCCTGGTGGACAAACACTGCACCTTCTCCTATCAGATCGCTGCCTTCCACGACAAGGCCAGAGACATGCTTTTCGGGAAGCTGCCCACCTGGCAGGACAAGTGTGGCGATGCCACCAACGTGCCCGAGAGCGTGATGTCTATGATTGAGGGTCTTCGCACCCCAGTGTCCATCACCCCCCAGGCCTCCCCCATGTCCCAGAGACACAGTAGGAGCAACTCCATATTCCGGGACACAGTTCCACCCCCTGCCCCGGCACTGAAGGCTCAGACCAGCCCATTGGCCAGTATGTTCACGCAGGACACACCCACAACAAACTCAGTCACCAGAGAGACTGAGAGTGgcacagactacAGGGAcaatggaggggaggagagtggcgGTCTAGGTCCCAGGTCAGTGTCTGTGGCCACAGGACTCAACAACATTGTGAAGAGACCCAGGGTCCGCACCATCTTCCCCCACACCTCTGGGACCAACTCTACGCTGCTCAGCTTTGACGAGGGAGACATCATCACCCTGCTCATACCTGACGAGAGGGACGGATGGCTCTACGGAGAACTGGAGAAAACCAGACAGAGGGGATGGTTTCCATCCTCCTATTGCCGGGCATATTCAGAGCCAATAGTGAATAACAACAGtgtgGGGGCTCCTCCCATGCGCAGTAAGAGCGTGGTGAACCTGCTCCAccaggacacagagacagatgatTCCTCCATGATCCTCCCCCCTCCTGACTACAGCGACTTCCCCAAGAGGAGTGTCCTCCCGGGCAGCAAGCAGCACTCGCCCTCCCTCTccgcctcctccagctcctctgtACACACGGGAACCCAACTGAATGGTTTTGGGAAGACGCCTCTTTTCCTCGGGGGAGGGAACCCGTTCACCGCAGTCAAGCTACGTCCCACAGTCACCAATGACCGCTCAGGCCCAGTCATCTAAACCTCCAGACCCACCCTCCTGTCCACCTCTACACAGGAGCGGCACCTCCAGCTGGGCATCACCCCATGCTGTCCCCCCTCCTCCAGGCGGATGGACCCAGGGCCGGACACTAGTGTACGGGACAACTTGACACTGTGGGCTGCTGTGCTGAAGATCCAGTAATTTCACTACTACAGATGCCATTAGAAATGACATTGTCTAATACACAGTTGCCCTACTGCTGCAAACGCTCTCCCTGAGAAGGTGGGAGGATTTATTTATGTAAACAGATGCACATATATAGATTTTCTAGACCTATTTTTGTCGGTGATGATGAGTGGCGACATACTACATGCGTTCTCGCTGGGCGTGTGTGAAAAGGAGTCGAGGAAAGCCTGAGATTGGGCCGTTGAAATATCAGAATGTATTTctgactctttttttttttttttgcttcaatCACTCATCAAAAAATGTTAGTTGCCATAGGGCAGTAGATAAATGAATGTATGCAATACGGGACCTATGCATCACAATTTACAGAGGTCCTTATGGTAGCGTTGCTCGTTATTGTTGATGTATCACGAATATGATATGTAAAATTGCATTGTTGCTATCATTACTAAAGACCAACTGCTAGTGACTGTCGAATAGAAGTATACTCATTCAAGGGAAGCGCACATCATTTTTCCCCCTCAACTCCTTCCAAGAAGTGTACAACGAATTTGATTGGTTGAGTGTGTCATTGTCATTTTGCTGATTGGTTTTTCAGTTAAGTGTTCATACAGTGCTGCTGTTACTAGTGGAAGATGTGAGACCTGTTTACCTTAACTCTATATACCAACAGTAATCATTCTGTGAAACGTCTCTCACCTGTCTGTTATTCAAGTAGCccgggtcatgttcattaggcaccaaacggaagaaagcagactgaaacctTTGAGGGAAAAATCAACTGTTTTAAAACGTTTTCCCTTACGTTTCCTAATGAATATGAGCCAGTAGTGCTGTGGACATCCATTTTTAAAAGGACATGGTTAAATGGAACTCATAACTTCCCATAGACCGTGCAGCCATTTTGCTTTTATCTTCATGCTTCATGGAAGGCATTTTCAACCTAGTGGCTAATTTGATCATTTTTCTTTGGTCTGCCTTGCCTACTCCCTGAGTTTGGAACGTTGCTGtatgaaaataaacaaatatacactgaacaaaaatgtaaacgcagcatgtaaagtgttggtcccatgtttcatgagctgaaataaaatattccagaaatgttccatatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355739 lncRNA downstream 2958 55429734 ~ 55432178 (-) False G1188682
TU1355741 lncRNA downstream 2958 55429734 ~ 55432178 (-) False G1188682
TU1355742 lncRNA downstream 2958 55429734 ~ 55432178 (-) False G1188682
TU1355743 lncRNA downstream 2958 55429734 ~ 55432178 (-) True G1188682
TU1355783 lncRNA downstream 62607 55372199 ~ 55372529 (-) True G1188717
TU1355814 lncRNA upstream 7272 55517190 ~ 55517458 (-) True G1188744
TU1355822 lncRNA upstream 13021 55522939 ~ 55523269 (-) True G1188752
TU1355859 lncRNA upstream 23329 55533247 ~ 55536744 (-) False LOC110538789
TU1355860 lncRNA upstream 23329 55533247 ~ 55574537 (-) True LOC110538789
TU1355915 lncRNA upstream 109739 55619657 ~ 55620056 (-) True G1188831
XM_036941575.1 mRNA downstream 16075 55394864 ~ 55419061 (-) False LOC110519575
XR_005035605.1 mRNA downstream 16075 55395866 ~ 55419061 (-) True LOC110519575
XM_036941577.1 mRNA downstream 16076 55394864 ~ 55419060 (-) False LOC110519575
XM_036941576.1 mRNA downstream 16264 55394864 ~ 55418872 (-) False LOC110519575
XM_036941582.1 mRNA downstream 93285 55334459 ~ 55341851 (-) True LOC118936431
XM_036941581.1 mRNA upstream 23329 55533247 ~ 55552500 (-) False LOC110538789
XM_036941583.1 mRNA upstream 519503 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 519503 56029421 ~ 56036822 (-) False LOC110486851
XM_036941574.1 mRNA upstream 578374 56088292 ~ 56110969 (-) False LOC110485237
XM_036941573.1 mRNA upstream 578374 56088292 ~ 56110971 (-) False LOC110485237
TU1355681 other downstream 222421 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 408688 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 408688 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 603814 54823912 ~ 54831322 (-) False LOC110485228
TU1356467 other upstream 402306 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 402329 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 402329 55912247 ~ 55915885 (-) False G1189279
TU1356468 other upstream 402329 55912247 ~ 55915885 (-) False G1189279
TU1356469 other upstream 402329 55912247 ~ 55915885 (-) True G1189279

Expression Profile