RNA id: XM_036941732.1


Basic Information

Item Value
RNA id XM_036941732.1
length 3619
RNA type mRNA
GC content 0.40
exon number 22
gene id LOC110486950
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58624934 ~ 58666018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATTTGCAACTTTATGTGATCCTAATGTGGTTTAATGGATAACTTTGTCAGAGACAAATTAACTGAATGGAACTTCAGTGAGTATATTGACAGATTCAAAGATGAAGAAATTGACAAGGAGAGTTTCCTGCTCCTAGATGAAAAAGCCTTTGCCAACTTGATTCCAAAACTTGGTCCAAGGTACAAATTTCAAGAGAAACACAAGGCGATACAAAAGGAGTTAGAAAATGATGGGACAGCAACTGGCAGCCAAGTTCAAACATCCTCCACAATGGCATGGGCTTCCTTGGACCAGGCGGCAGCTCCCAGCATTAGTCCACAAGGCAAAATAAAACATCCTCCTACCTTCCCTTCAACCAGTACACCACCAAAGCAACTGTGTTTCTCCAAACCTACACAACCAACCTCTAAATTCGagagacaagccATGGAGGCAGCAGAGACGTGTGTGACACAAGTCCTTGACAAACTCAAAACTCTTCCCAAGAAGGAATTCATTGACTACCTCAAGGGTAAAATGACAAAGTTAAGGACAGGTGTTAAAAACAAAGTCTTAGTTGGAATATTTGGGAAGACAGGAGCTGGTAAGAGCTCTTTGATAAATGCCATCTTGGGTGAGCAGAATTTTCTGCCCAATGGTGCAAACATCAGCGCGTGTACCTCAGTCATGATCCAAGTGGAGGCCAACATGACTAACTACAGTTACGAGGCAGAAATTGAATTCATTTCAAAAGAGGAATGGGAAAATGATTTAAAATCTCACCTGGATATCATGTCAGATGAAAATGACAACAAAAATGAAGAATTAGTCAAGGTGGCAACTGCAAAAATTCAGGCCTTTTACGGAAAAGATGGAGTTGGGAAAAGCTTAAATGACCTGATGAAAGGGGAGCATTTCCGAGAAATTCCAGAATTTCTATCACCAACAAACATTGTTAAGAAGATTTCATGTGGCACGGCATCAGAGCTTTCTGGAAAGATTGCCTGTTACACAAGGAGTGATAATAAGATGGCAGCAAAACACTACTGGCCACTTGTGAAGTGTGTGACAATTAAGGTGCCCAACACCAAAGAGCTTCTGGAACACATTGTGCTGTTGGATCTTCCTGGAACTGGGGACTGCAACAAGACCAGAGATGATATGTGGAAATCGCATTTAAGTCAGTGCTCGTCTGTGTGGATCGTGAATGACATCCAACGGGCCGCCTCTGAAAGAGAGCCATGGATGATTTTGGAAAGCAGCTTCAGTTATCTGATACAAGGAGGAGAATGTGAGAATATCACCTTCATCTGCACCAAGACAGATGCCATCAACCCTAAGAACTACCTGGGATCACCAGGTTTAAAGAACAGTGAACTGCACCTCGACCTGGAAAAGAAAGGAGCAGCTGAGCGGAAACGAGGCTGCATCCAGCACAGAAATGAACAAGCTAAGATAATGTTGGGAGAGAGGTTCAACGACGAAGTTGTGAAAAAGAAACCTTTCATTCAAATGGAAAACATCTTCCAAGTGTTTACAGTGAGTGCTGAGGAATTTCAGAATGATGAGAATCCCATTCTGGAACAAGAACAGACAGAGATACCACAACTCAAACAAGTTCTGGAGGATATGAATGAGAGACACTCAAAGACTGCAGTTAAAGACTATGTATCTGGAGTCTATGGGATCCTCTCTTTGATCAAAGCGGCCAACTCCAACGACTCGACGATGGTTGAGATGAAATCAAACATGTACCAACTGCTAAAGGATTCACTGAAGAAGCAGATTTCTACCATCACATCCCtcatgacaaaacattacaacGACCTTCAAAAACTCCTGTCAGAGGGAGTTGCCAAGTCAGAAAAATCATGCTTGCAGATTGCCAACGACAAAGTAATCACACCAAAGGCAAGGAAGGATGGCAGAGGATACCATCGTACATTGTCATCTTTATGCAGGAATAATGGGTTCTGTAGGTCAACAAATGGAGACATCACAGACCTCAACAAAACGTTGGCTGAATCTATGTACACTGCCATAAATGAGAAATTTGCTGTAATTTTCCCAAATGCTGGAACAACAGGAGAATCAATCTATGAGAAGATCTGCAACTTCAGCATCATCTCAGACAACATGGCCAAGGAGTGGGAGAACACCCCCATGTCTCTGTATCTGATGTTTCTCACCACCGAGGAAAATGTTTTGAAGGATAAACTAAAACGAGATGTCCTCCTGAAGAAGAAAGTGATTTATGAATCTCTGACTGACGAAGTCAAGATCATAATGTGCCCATGTTATGAGGAGGCTTCAAACATATCTGGAAAGGGAACCTTGACGAAGACTCGGGAACTGCTGGTCCAGCACATCGACTCATCGAAAAACATGTTTGCCAATGCTCAGAAAAAGATGTTGGAAGGTTTTGAGAACCTAATGGAATACATAGAGCAGACGCTGAGAACCGAACTACTGGAGTCATTGAATCGATCCCTGAAGACCCCTAACAGTTTATCTCTCCCAGATGTCAGTGAGCAGTTGAAAAACATGGAGACCTACAAGATGTTGGCTCTAAGAGATCGCACAAGCCAAATCTGACTGTTGAGAAGAGTCGTAAAGCAGAAGTAGTGACATGATGGTAAACCATTCAAAACCCTTGGCTATAAAAATGTATCACATTTTCAGTAGCTTATTTATCAGTAGTTGTTTGTATCAGAAGTTTTGCCGTAGTTATTAATGTTATGTTTGCTGACGTGATGAACGTGGTATAAGCAGGATAAACATTTATGGTCTATCAGTGCTCTGATAAAAATGCAGCTTTGCATAAGATGCGCCATGATGCTCAGAGAACTCATAGCTCCTAGGTGTTGATTCCTTACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTTACATATTATATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATTCCTTACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGTGTTGATCCCTGACATATTCTATACTCAATGTGTTGATCCCTTACATATTCTATACTCAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358871 lncRNA downstream 56642 58567742 ~ 58568292 (-) True G1191230
TU1358809 lncRNA downstream 113511 58510541 ~ 58511423 (-) False G1191187
TU1358810 lncRNA downstream 113511 58510541 ~ 58511423 (-) True G1191187
TU1358787 lncRNA downstream 117573 58454351 ~ 58507361 (-) True G1191166
TU1358808 lncRNA downstream 177065 58446718 ~ 58447869 (-) True G1191186
TU1358910 lncRNA upstream 41080 58706745 ~ 58707472 (-) False G1191265
TU1358911 lncRNA upstream 41080 58706745 ~ 58707672 (-) False G1191265
TU1358908 lncRNA upstream 41156 58706821 ~ 58707472 (-) False G1191265
TU1358909 lncRNA upstream 41156 58706821 ~ 58707672 (-) True G1191265
TU1358921 lncRNA upstream 57537 58723202 ~ 58723434 (-) True G1191273
XM_021592786.2 mRNA downstream 7260 58614388 ~ 58617674 (-) False LOC110512346
XM_036941724.1 mRNA downstream 7260 58616182 ~ 58617674 (-) True LOC110512346
XM_036941719.1 mRNA downstream 20959 58588778 ~ 58603975 (-) False LOC110486955
XM_036941720.1 mRNA downstream 20960 58588779 ~ 58603974 (-) False LOC110486955
XM_036941723.1 mRNA downstream 36409 58561680 ~ 58588525 (-) False LOC110514412
XR_005035617.1 mRNA upstream 2952 58668617 ~ 58672886 (-) True LOC118938334
XR_005035618.1 mRNA upstream 9754 58675419 ~ 58679236 (-) True LOC118938335
XR_005035620.1 mRNA upstream 253171 58918836 ~ 58954601 (-) False LOC100136119
XR_005035622.1 mRNA upstream 253171 58918836 ~ 58954985 (-) False LOC100136119
XM_036941738.1 mRNA upstream 253171 58918836 ~ 58956165 (-) False LOC100136119
TU1358844 other downstream 22702 58596776 ~ 58602232 (-) True LOC110486955
TU1358845 other downstream 36408 58587325 ~ 58588526 (-) True LOC110514412
TU1358104 other downstream 630910 57966137 ~ 57994024 (-) False G1190628
TU1358103 other downstream 630910 57991901 ~ 57994024 (-) True G1190628
TU1357843 other downstream 918144 57702536 ~ 57706790 (-) True LOC110486915
TU1358947 other upstream 94058 58759723 ~ 58762086 (-) True G1191298
TU1358988 other upstream 202398 58868063 ~ 58868971 (-) True G1191335
TU1359914 other upstream 240488 58906153 ~ 58909232 (-) True G1192082
TU1360011 other upstream 454347 59120012 ~ 59121156 (-) True G1192158
TU1360061 other upstream 609476 59275141 ~ 59275849 (-) True G1192205

Expression Profile