RNA id: TCONS_00042517



Basic Information


Item Value
RNA id TCONS_00042517
length 396
RNA type mRNA
GC content 0.58
exon number 2
gene id XLOC_021381
representative True

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 404975 ~ 406890 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGCGGGTGTTGCTGTGCAGTTTTCTGCTCCTGCTGGGAGAGGATGCTCTCCTGGCCTGCTCTCTGAAGAACTATACTCTGTATGTGGAGAAACACGAGTGCGGACACTGCATGGCCATCAACACCACCGTCTGCAGCGGCATGTGCTTCACACGGgaCACAAACGTGCAAGGGTTTGTGGGCAAGCGTTTCCTGCTGCAGCAGAGCTGTATGCACCGCTCTCTGGTGTACCGCTCTGCCAGGATGCCCGGCTGCCCCGTCCACATCGACCCGCTCTTCTTCTACCCAGTGGCCCGGCGCTGCAACTGCACCAAATGCAACACCAGCCGGAACGAGTGTGTGTTCAGacacaagcacaaacacaacAGATGCTCCAAGCAGCTGCGCACCGTCTGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181336

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042511 lncRNA upstream 91619 309117 ~ 313356 (+) False XLOC_021378
TCONS_00044763 lncRNA downstream 138373 545263 ~ 597603 (+) True XLOC_021385
TCONS_00042530 lncRNA downstream 626515 1033405 ~ 1042817 (+) True XLOC_021391
TCONS_00042533 lncRNA downstream 740272 1147162 ~ 1150348 (+) False XLOC_021393
TCONS_00042534 lncRNA downstream 740272 1147162 ~ 1152058 (+) True XLOC_021393
TCONS_00044764 lncRNA downstream 1231399 1638289 ~ 1638981 (+) True XLOC_021396
TCONS_00042516 mRNA upstream 7675 384850 ~ 397300 (+) True XLOC_021380
TCONS_00042515 mRNA upstream 10439 383782 ~ 394536 (+) False XLOC_021380
TCONS_00042513 mRNA upstream 37282 354418 ~ 367693 (+) False XLOC_021379
TCONS_00042514 mRNA upstream 37328 355021 ~ 367647 (+) True XLOC_021379
TCONS_00042510 mRNA upstream 89538 309099 ~ 315437 (+) False XLOC_021378
TCONS_00042518 mRNA downstream 2688 409578 ~ 419441 (+) True XLOC_021382
TCONS_00042521 mRNA downstream 146506 553396 ~ 567183 (+) True XLOC_021386
TCONS_00042522 mRNA downstream 171328 578218 ~ 588248 (+) True XLOC_021387
TCONS_00042523 mRNA downstream 173003 579893 ~ 676264 (+) True XLOC_021388
TCONS_00042524 mRNA downstream 235111 642001 ~ 653333 (+) False XLOC_021389
TCONS_00042509 other upstream 91656 309063 ~ 313319 (+) False XLOC_021378
TCONS_00042508 other upstream 155875 240604 ~ 249100 (+) True XLOC_021377
TCONS_00042519 other downstream 5652 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042520 other downstream 35347 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042596 other downstream 3314151 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042666 other downstream 5870285 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042675 other downstream 6418798 6825688 ~ 6825802 (+) True XLOC_021466

Expression Profile


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