RNA id: TCONS_00042685


Basic Information

Item Value
RNA id TCONS_00042685
length 1549
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_021476
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 7692042 ~ 7709134 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gggatagAGAGTGAACAGCGATGGCGGCGAGACCAAAGCACCTGAAACttttcattgtaacttatttGCACACATCACTCATTTTCCTCAATGTATTTATCGACGCTACAGACGTGACGTGGGATGAAAATGGATACATTCTGTACTGTCCGTGCATGGGTCGCTTTGGAAACCAGGTGGATCACTTTCTTGGATCACTGGCTTTTGCTAAAATGCTGAACCGAACTCTCGCGGTTCCGCCGTGGATTGTTTACCGCCATCACTCGCCGCCTTTTGCTAATGTGCATGTTCCATACAGTGAGTATTTCCAGCTTGAGCCGCTGAAGCAGTACCACCGTGTGGTGAGTCTGGAGGACTTCATGGAGCACTTGGCTCCTAAACACTGGCCTCATGGTCAGAGAATCGCTTACTGCTTTGAGTCCGCAGCGCACAGGAGCCAGGACAAAAAGAGTTGTCCTATGAAGGATGGAAATCCTTTTGGTCCGTTCTGGGACCATATTGGAGTGGACTTTGACCGATCCGTTCTTTTTGGAGGTCTTTCATTCAGCTCCTACTACCAGCCACACTGGATTAAAAGGTTTCCGCCAAAGGAGCATCCGGTTCTTGCTCTTCCAGGAGCCCCGGCGCAGTTTCCTGTGTTGGAAGAGCACATTGGTCTGCAGCAGTTTGTGGTTTGGTCTGACAGAATTGTACAGGAAGGAGAAGGTCACATCAGAAACCTGCTGAACAGACCCTACGTGGGCATCCATCTGAGGATCGGCTCTGATTGGCAAAACGCCTGCAAGCTGTTGAAAACGGGTGATACTGGTCCACACTTTATGGCGTCTCCACAGTGTGTAGGATATGACCGTCAGACTGCTCTGCCACTGACCATGAACATGTGTTTACCTGATCTGACGGAGATCCGCCGAGCTGTGAAACTCTGGGTGAAGAACACTGGTGCTCAGTCTGTATACATCGCCACAGACTCAGAGTCGCACACCACAGAGATTCAGAAACTCTTCAAGGGCAAGGTGAAAGTGGTGAGCTTGCAGCCGGACACTGCTCAGGTTGACCTGTACATCCTCGGACAGGCTGATCACTTCATCGGCAACTGTGTTTCATCCTTCTCTGCCTTTGTCAAAAGAGAGAGAAACATTCACGGGAGACCCTCGTCTTTCTTTGGACTGGACTACCCTGGAAAAAAGAACAGAAATGAAGAACTCTAATGAATCTAATGAAACTCTAATGTTTCTCATTCGTTTTTGAACAAGGCAATTTGGATACACACCTCAAGTACGTAAAGGAAGGGAGAAGTTGATTCATATCTCCCAATGTTGCACTACTAGCTGTACTTTGAGCAGTCAAACCAGAACCAAATTCTCCATTTCGTATTACTGCAAGTTTCTTCCAGAAACACATCAGGGTTTATTGTGACATATCAATTGATTTGTACTGGAATGTTTGTGTAGACTCATTCACAATTTTCGAGGATGGAAACTGACCAGTAAGGGTTAGGAatgctggaaaactgtaaccatttacttcatagtaaaaacaaatactatgg

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0006004 fucose metabolic process biological_process
GO:0008417 fucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046922 peptide-O-fucosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040303-2 Predicted to enable peptide-O-fucosyltransferase activity. Predicted to be involved in protein O-linked fucosylation and regulation of Notch signaling pathway. Predicted to act upstream of or within Notch signaling pathway and fucose metabolic process. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in Dowling-Degos disease. Orthologous to human POFUT1 (protein O-fucosyltransferase 1).

Ensembl:

ensembl_id ENSDART00000018512

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044780 lncRNA upstream 256726 7405267 ~ 7435316 (+) False XLOC_021472
TCONS_00042680 lncRNA upstream 283595 7405546 ~ 7408447 (+) True XLOC_021472
TCONS_00044778 lncRNA upstream 283708 7402807 ~ 7408334 (+) False XLOC_021472
TCONS_00044779 lncRNA upstream 283708 7402808 ~ 7408334 (+) False XLOC_021472
TCONS_00042679 lncRNA upstream 283708 7402808 ~ 7408334 (+) False XLOC_021472
TCONS_00042690 lncRNA downstream 978437 8687571 ~ 8699993 (+) True XLOC_021478
TCONS_00044781 lncRNA downstream 1078861 8787995 ~ 8811577 (+) False XLOC_021479
TCONS_00044657 lncRNA downstream 1100225 8809359 ~ 8811654 (+) True XLOC_021479
TCONS_00044782 lncRNA downstream 1687534 9396668 ~ 9403617 (+) True XLOC_021490
TCONS_00044658 lncRNA downstream 2156567 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00042684 mRNA upstream 113150 7548797 ~ 7578892 (+) True XLOC_021475
TCONS_00042682 mRNA upstream 146082 7505943 ~ 7545960 (+) False XLOC_021474
TCONS_00042683 mRNA upstream 151430 7518294 ~ 7540612 (+) True XLOC_021474
TCONS_00042681 mRNA upstream 188025 7471072 ~ 7504017 (+) True XLOC_021473
TCONS_00042678 mRNA upstream 301014 7379728 ~ 7391028 (+) True XLOC_021471
TCONS_00042686 mRNA downstream 1313 7710447 ~ 7736719 (+) False XLOC_021477
TCONS_00042687 mRNA downstream 1587 7710721 ~ 7732742 (+) False XLOC_021477
TCONS_00042688 mRNA downstream 1598 7710732 ~ 7728647 (+) True XLOC_021477
TCONS_00042689 mRNA downstream 970082 8679216 ~ 8699677 (+) False XLOC_021478
TCONS_00042691 mRNA downstream 1088009 8797143 ~ 8799880 (+) True XLOC_021480
TCONS_00042675 other upstream 866240 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042666 other upstream 1387768 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042596 other upstream 3957033 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 7249690 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 7279383 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042706 other downstream 1598440 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 1909079 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 2018276 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042720 other downstream 2437418 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042723 other downstream 2638743 10347877 ~ 10350429 (+) False XLOC_021499

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_04822864_04825902.mRNA True 1750 mRNA 0.44 6 CI01000021 4822166 ~ 4825902 (-)