RNA id: TU1330354


Basic Information

Item Value
RNA id TU1330354
length 2841
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G1166590
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33423972 ~ 33432342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGAATGGGTCTATGACTCACCGCTCTTCCAGTCGGGGTGGCACATCTTCAGGTCTCTGCAGGTGCGGGCGGGATTCTTCTTGGTGCCCTCGGGAGAGCGGATGTTCTCAATCTGCTGGCTCAGGCTCTTGAGAGTGGTGTCAACCTCCAGGTCGCGGTCGCGCATCACGTTGGCGTCGTCGGCGCGGAAGTGACGGAAGGGATCGGGGGCCTTCTCCTGAGCGGGCTGAGCAATGAAGCCCATGTCGAATCCACCGCCGGGAGGTCCGGGGGGGCCAGGGGGACCGGGAGGGCCAGGGGGTCCCTATATGTGGAGGAAGCAAAGGCCAACCAAGATAGGATGTAAAGAAGAATAAGAGGAGTACAAGGAGCAAAATATATAGATTTTTGAAGTGGTTGATGTGACTTACAGAGGGTCCCATCTCTCCAGAGCGACCACGGGGTCCGGGAGGTCCGATGGGGCCGGGCAGACCGCTCATACCATCCTTACCGGCGGCACCAGCAGATCCAGAAGGTCCCTAGTGTAGGGAGAGCCATAGCTTAATACGACAGCGTGGACTATCTAAGTCATATTGTCACCAGAGCAGTGATCCACAGTCGGAACGTTGCTGTGCTGATAGTTGTGTGACCGCTGTCGTAATGTGGGTCATACTCACTCTAGGTCCAGCGGGGCCAGAGGCTCCAGCAGGTCCTGACTCTCCAGATGGTCCCTATGGGCAGAAAGAATAGATTTAGGTGTCTGTTATATCAAACAACAATATTACAGGGAGAAGGTTGATTTCCCTCctgccccccacccacccacttgCTAGGTTTTGTGATATCTTGGCTTCATGCAGAAATATCTCTTCCCCTGTGCCTTTTGTGGGCATGTCCAAATCTAGCCATTTATGGTGTACTGCAATGTGGATAAAGGGTAGCCATTTCCCTTGTTTCTGCTGGAGTCACTTGTGTGTCATTATTGTTGTCGATTTGTAATCAGCAGGGGTACTCACAGAGGGGCCAGAGGGTCCCTGCATGCCAGTGAATCCTCTATGTCCCTTCATGCCTCTCTCTCCAGCCTCGCCAGCCTCTCCCTTGTCTCCACGAGCTCCAGCGGGTCCCTGGGTGAGAAAACGACAGGTGTGTTCAGTATACCCTTTCCTCAGACTCAGAGTGGAAGAGCGGATATTGTGTTCCTCGTGATGGTTTTATGAGTCTGTGATGGAGTATACACGTACTGATGAGCCACGGGGACCAGCAGGGCCAGCAATACCAGCGGGGCCAGCAGGAccctgaaggagagagagaaagagattatgACAACCAATTCCATTGATAATCCCAACTGGCATGTCATAAAGGCTATGTAGCTCAACTACTAGGAACCTCCAGTACATGCTGTATTCTAACAGCACCACAAACAAAGCCCTCAACCCCTTCTACAGCCTTAACTAGTTTGCAATAGGCGGCCATTTTGAGGCTACAACAGTTTAACATGCAGTAAGGTCTCTGAACATTATCGAGTCTGAATTGCTGCCCAGTTATGTATTCCTCGTCAGTCGAAGGGAGTAATGGTGGAGGATCTGGACACTTACAGACTCTCCACGGTCACCAGACTTTCCAGCAGGGCCGACGGGTCCAGGGGCACCAGGGGGTCCGGGGGCACCGGAAGCACCAGCGGCACCAGACTCACCACGCTCTCCCTATAGGCAAGACAAAGAGGAACAGAGACGGGCCAAGAGAAGATCAACCTCCTGGACATGATCCCAATACATTACAGTATGTGATGCCTATTTCAGCCATGCAAGTAGTCGTGTAATGGTGCCCAGTGTAGATTGTCTACAGTATACCAACAGGCTGGTTCCCAAAGTGAAGGGATTGACTCTGTCTTGAGGACATGTGTATGAGCAGAGCTCTCACCTTGGGTCCAGCAGCACCATCGCGACCAGCAGATCCCTCGTTACCAGGAGTTCCCTCGCGACCAGACTCACCAGGTGCTCCAGCCAGTCCAGGGGGTCCCATGGGTCCGGGGGGTCCACGCTCACCAGAGGGGCCACCAGGTCCCTGCTTGCCAGGCTCTCCCTAAAGCAGGAAACAGAGAACAGGGTTAGATCTCAACCACAACACGAGAGTAACCACGACTGAAGTAGAGCAATGGCGACTCAATTGTATGAATAAGCTACTGCAAGAGCGTTGCACTTGTCGGCTGCCATCTTGGCAGAGCTAGCAGAGGGCCTTTAGCATCATTGCGGCAGGCTTGTAGACTATCCAATCACTGCCTTATTGAAAAACTAGGGATCTCCACCATGAACTTGGTCTCCTCTGCAAAAGCCTAACGACATTTAACGTGAAGTTCTATAACTAGCTCTCTACAGCACTGACCAGTTGTCCGGCAAGGCCGGGGAAACCGCGCTCGCCTCTTTGTCCGGGCAGACCAACAATACCACGCTGTCCACCAATACCCTGAGGTCCGGGAGTTCCAGGGGGTCCctTTGGGACCATCTCCACCAGGCTGTCCCTTCTCTCCCTGGGCACCAGGGGGTCCGGCAGCGCCGAGCTCACCAGGACGACCGGCGGGGCCAGTCTCACCACGGTTACCCTTCTGTCCTTCCTTTCCACCAGGGCCTGGGGGTCCGGGGGGTCCGTTGTTGCcctgaaagaaagaggagagggtggTTGAGTATGAGATGCGGCCCAAAGTTGACCGAATACACCAGTATCAATGGCTGTTATCAATGACCGTATTGTGATCAGCTACATGCTAAGCTAACGCCTAGCTAGATGCTTGTTTGGGCATCAGGCAATGCCATTGTGTCTTGGGTTGGTTGCACAATAATATGTTGTCTTGATAGTTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1330348 lncRNA upstream 52588 33371155 ~ 33371384 (+) True G1166584
TU1330339 lncRNA upstream 54014 33369236 ~ 33369958 (+) True G1166575
TU1330346 lncRNA upstream 56067 33367644 ~ 33367905 (+) True G1166582
TU1330334 lncRNA upstream 65794 33348820 ~ 33358178 (+) False G1166573
TU1330357 lncRNA downstream 282 33427285 ~ 33432342 (+) True G1166590
TU1330463 lncRNA downstream 116110 33543113 ~ 33545530 (+) True G1166690
TU1330509 lncRNA downstream 180351 33607354 ~ 33607579 (+) True G1166735
TU1330531 lncRNA downstream 217421 33644424 ~ 33644627 (+) True G1166755
TU1330571 lncRNA downstream 265477 33692480 ~ 33693352 (+) True G1166783
XM_036939716.1 mRNA upstream 84245 33336015 ~ 33339727 (+) True csf-3
NM_001195184.1 mRNA upstream 84250 33335447 ~ 33339722 (+) False csf-3
XM_021556174.2 mRNA upstream 84250 33335690 ~ 33339722 (+) False csf-3
XM_021557539.2 mRNA upstream 96938 33320635 ~ 33327034 (+) False LOC110486150
XM_021557554.2 mRNA downstream 210806 33637809 ~ 33653835 (+) False LOC110486158
XM_036940808.1 mRNA downstream 210806 33637809 ~ 33653835 (+) False LOC110486158
XM_036940809.1 mRNA downstream 211044 33638047 ~ 33653835 (+) True LOC110486158
XM_021557562.2 mRNA downstream 343436 33770439 ~ 33783009 (+) False LOC110486161
XM_021557563.2 mRNA downstream 343436 33770439 ~ 33783009 (+) True LOC110486161
TU1330025 other upstream 174764 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 193489 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 701510 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 1313239 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 2304295 31114311 ~ 31119677 (+) True LOC110486104
TU1330567 other downstream 363637 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1254185 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 2562853 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 2740625 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 2742893 36169896 ~ 36171571 (+) True G1169208

Expression Profile