RNA id: XM_021557554.2


Basic Information

Item Value
RNA id XM_021557554.2
length 3435
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110486158
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33637809 ~ 33653835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATCCACAATCCAACCATTGTCGATGTAAACCGCAAATGAACGGTTTTGACCCCCTTTCTCGCAATGAATTTTTCACAGTTTCTCACGAGGAAGCGTAGCCACTGATCTGCCTAAGGGATGGAGTCTCTCTTCGGGGGCGAGCTGGGCCTCCTGGGCGGGGGCGAGGGGCTGAGGGATGACGGCTGCGGCTTGGGGTCGGGGGTCAACTGGTCGTCCTCACCCATCCAAGACGACATGTACCCCTCCCACTTCGCCCTGGCCGCCGCCTACCATGACATCAAGACGCGATTGGCCAGCCTGGAGCGAGAGAACAGCAGCATCAAGAGGAAGCTGAAGAACTATGAGGTCAAGttCCCTATGATCAGTGAGTTTGAGGAGGAGAGGACCCTACAGTGCTGCTCCTGTGAACCCAAGGAGACCAGCCTACTGCAGTCAGAGACCACCAACCTGCAACAGAGAGTCAACTCCCTCACACAGGAGCTCCAGAAGAGTAAAGAGcgagaggagaggctggaggaTGTGATTCAGGCCTATGAGAAGATCCACATGGAGAAGAGTAACGTTCAGAGAGACCTGGACAAGATGACAACACTAGCAGAGCAGCATATGGAGCGTATCTGTGGTCTGGAGTCAGCTCTGACGCAGAGGGAGGGGTCCCTGCAGAAACTCAGTGCTCAGCTGCACAGCAAGAACATTCATTACCTACAGCTACACACCAGTCTGGACGTGCCTcgcgAGCGGAACGGGCGGGGTCCAACCCTGCAGAGCTCTCGTAGTCTGGACGCCGTGTCCGACCTGAAGCTGCAGCGGTTGGAGGCGGAGCTAGAAGGAGCGCGGCAGCAGGCCCAGGGtgcgtgtcagagagagaaggcgATGAAGGAGGAGCTACAGAGACTGCAGGCAGAGATCAGACAGCTGCAGCAGAATGTACAGAGACAGGAGGTGACCACACCCTGTGAGCACTGTGACATGGAATGGATAAAGAAGGCAGGAGATGAACAGGTGAACCTGGCATTGGCCTACACTGagctgacagaggagctggtgcgTGTGCGAGGTCTGGCTGTCAAACAGACGGAGATCCTCAGGAAGGCATCCCACGAGCAGATGGtcctgaGACACTCCCCAGCCCCCCAGCGTCGCTCCCCGGCCTCCCAACGCCCCTCCCCAGACcgcctccacccctctcctcccctctcaccttCCTCACCCCCTTCTGGCCCCGCATCCTACTCCCCAACTGGCCTCTCTTACTCCCCCACCGGCCCAGCCTCCTACTCCTGCCGGCCAACCAGCCAACGGCTACGTGCCCGCTTCCAAGGGCGCCGCAGCTACTCGGAGGTGGCCGACTCGTCTGCCCACCAGAGGCCCCCCCCCAGGCTGCTCCGTGACCCAATCTCCACCCTGCCCAAGCCCAAGAACATGGGGGAGTCTGGGGCTTATTCCCGCCCGCCCAGGATTTCCCTGGTGGGGCTTCCCCGGCCGGCCTCGGCCCGTGGAGCTGTAGGTgctggtggagggggaggaggtggtggcaCCAGCCTGAGCAGTAGCCCCCACCACCATGCCCTGGAGCTGGGCTTCCCTCTAGCTGCAGAGGGGCGTCACTTCTGTCATCTGAAGGATCCCCCGGCCCCCACCCCACAGGTCACCCCACCCCAGTCGTCTGACGATGAGGAGTGGAGGTGCCCATCCCCGGTCTCCAGTCCTCCCAGGACACTGGGGGCCATGGGGGTAAGCTCACGGGAACCCCCTCCCTGCCCTTCCTTCTTGGCCCTAAAGGACCCGGCTACCCTCGCCTGCCACCTGCCAGGGTACCTGAACGCAGACCATGCCCAGTCCTGGCCCTCCATCAATTTGTGGATGGAGACGGAGGAGAACGACGCCCGGAGCTGCCCTCTGTGTCAGCTGACCTTCCCCACTGGTTACCCCGACGACGCCCTCATCAAACACATCGACACGCACCTGGAGAACAGCAAGATCTAAACCCCCCCCAAGACACAGATCAACTTACCCTGCCAAATTCTAACCTAAACCATGATCAGGAAAATCGATTGCAGATCCCCTTTGCAATATGACACTCTAGGGCAGACTGCATCCACTGAATCATCCATCTAAATTTAGATGTGATACTAGTCGTTTTCTAAACTGGAAAGTTTCCTAACCTCTGTATTTGACCATGTTAGTTTAGGGCTATAACAAGGGCCAGTGCTGTTTCTGaatgctccccctctctcccatgttATCAGGTATGGTCTTTGACATGGTTACCTCACACTGTTTTTAAAACCCATCAATAATGGGTCACAGCCCAACTACATGCTTTTATCACGAAGTTTACACTGTCAAACCAGAATGAACTCGTCACCCAGACTTTAAGGGCATATTCATAACAGAGGTACACAGCACTTTTTACAATTTAGTTCTAATGGAACTTGAATAGTTTGTCGTCGAGATTCAAGAACAATCTTTAAAACATCTCACGTGTCTCTGTAAAATGTAATGAAATAACATGAAGTTAAGGGTGACAGAGGGGTTGGTGATAATGGCTAGAAATAGTTGAGCTATGGCAGTGTGTCGAGGACCCTAAAACAGTGGATAGGATGGCCCTCTATAGGTACCTCGTAAGAAACTCCTTTATATATTGACATTCAGGGATTTATGATATTGTACCATAAGTGATTAAAACTAGGGTAAATAACAGTCTGAAGATGTTCTGGTTTGTAGGCGCTGTACAGTGATTCCAGGCTGTTGTTCTCCGTGGATGATTTGTGAATCTCAGAATACGGACACTTTATATGCAGTCATCTCCGGTACTTTGCCTACAGGATGTCAACACAATTCACAGCAACACATTTAAAACCCACCGGACAGGAATTTGACAGATACACAACACATTACCAGAACATCAGCTGATTTCTCAACTCAGCCAATTCGGAAATGTGCACAGCAATCAATATGATCCAAAGACACTGGATGGGGTTCTACCATCAGTACATTGTCTTACCTCAGATCTTTTGGTACTTATCAATCAGTTGAGGGACAAGTGTCGCGCAAGAGTGACGCCACCCGTCGAAAGACAATGCCATTAGTATAGATACCATAGAAGGTAACACTGCAATCaaccacaataaaaaataaaaacatttaaatgctGGATCGCTTCTAGAGGAAGACCAAGAGACTCTGCCAATGAGACGGAACAGTACTGAGATACAGGAGTGGAATCAGAGATGAAGGAATGACATTTGAAAAGGGACATGAACCCATGTGTTCACATTGAATTCCAAGACACTACAGTATTCCTTTTCCAAatcttttttttcccccttcccCTTCCGTAGAATCATGGAGGCTTAGTTCTCTCTTTATATAGTCATCTTTCGGGATTTCTGTAACGCAAATAATAAAAAAACTGAATTTCAAAAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1330509 lncRNA upstream 30230 33607354 ~ 33607579 (+) True G1166735
TU1330463 lncRNA upstream 92279 33543113 ~ 33545530 (+) True G1166690
TU1330361 lncRNA upstream 178326 33421300 ~ 33459483 (+) True G1166591
TU1330357 lncRNA upstream 205467 33427285 ~ 33432342 (+) True G1166590
TU1330354 lncRNA upstream 210806 33423972 ~ 33427003 (+) False G1166590
TU1330571 lncRNA downstream 38645 33692480 ~ 33693352 (+) True G1166783
TU1330554 lncRNA downstream 52978 33706813 ~ 33790260 (+) False G1166778
TU1330555 lncRNA downstream 53138 33706973 ~ 33790260 (+) False G1166778
TU1330557 lncRNA downstream 53138 33706973 ~ 33790260 (+) False G1166778
TU1330564 lncRNA downstream 53138 33706973 ~ 33808708 (+) False G1166778
XM_036939716.1 mRNA upstream 298082 33336015 ~ 33339727 (+) True csf-3
NM_001195184.1 mRNA upstream 298087 33335447 ~ 33339722 (+) False csf-3
XM_021556174.2 mRNA upstream 298087 33335690 ~ 33339722 (+) False csf-3
XM_021557539.2 mRNA upstream 310775 33320635 ~ 33327034 (+) False LOC110486150
XM_021557540.2 mRNA upstream 310775 33320708 ~ 33327034 (+) True LOC110486150
XM_021557562.2 mRNA downstream 116604 33770439 ~ 33783009 (+) False LOC110486161
XM_021557563.2 mRNA downstream 116604 33770439 ~ 33783009 (+) True LOC110486161
XM_021556220.2 mRNA downstream 565010 34218845 ~ 34221786 (+) False LOC110485153
XM_021557592.2 mRNA downstream 611549 34265384 ~ 34272808 (+) False LOC110486176
XM_036940839.1 mRNA downstream 612628 34266463 ~ 34272808 (+) True LOC110486176
TU1330025 other upstream 388601 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 407326 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 915347 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 1527076 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 2518132 31114311 ~ 31119677 (+) True LOC110486104
TU1330567 other downstream 136805 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1027353 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 2336021 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 2513793 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 2516061 36169896 ~ 36171571 (+) True G1169208

Expression Profile