RNA id: XM_021557540.2


Basic Information

Item Value
RNA id XM_021557540.2
length 1813
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110486150
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33320635 ~ 33327034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATCAGCATCAACTAGTATGGTATGTCTCCATAATCCTTTGCGTCTCGCAATAGTTGCCAGTCATTCTGCCGACGAGACGAATTATGAAAGAGACAACAGCCAAGAGACGCGAGAAACCCAAGGACTCCAAGGCTGAGAAACAGAAGGATGCGGGCCCCGAGCCGCAGGATGTGGAGATGCCGGAGGAGGACTCGGCCACTGCAGAAAAGAAACCCAAAGAACTTGATACCCTCACACTTGaagACATCAAGGAGCATGTGAAGCAGATAGAGAAGGCTGTGTCGGGCAAGGAGCCTCGCTTTGTGCTGAGGGCCCTGCGTGCCCTGCCCTCCACCAGCCGCCGCCTCAACCCCAACGTGCTGCACAAGGCTGTGTCTGGCTTCTACACCTCCAACGCCGCTGGCAAAGAGTTCCTACTCAGCTTCCTAGAGGAGCCCATGGACACCGAGGGAGATGTCCAGTTCAGGCCCCGTACGGGGAAGGCAGCTGCCACCCCCCTGATCCCTGAGGCGGAGGCCTAcctgcagctgctcctgctggTTTATCTCACCAACAACAAACGCTACACAGAGGCCCAGAAAGTGTCAGATGAGCTCTTGCAAAAGATCGGACCTCAGAACCGGCGTGCTCTGGACCTGGTGGCCGCTAAGTGTTACTACTACCACTCCCGCGTCTACGAGTTTCTCAACCAGCTGGACACTGTGCGTAGTTTCCTGCACACGCGCCTGAGGACGGCCACCTTGCGGCACGACGCCGACGGCCAGGCCACGCTGCTCAACCTGCTGCTGAGGAACTACCTGCAGTACAACCTGTACGACCAGGCTGAGAAGCTGGTGTCCAAGTCAGTCTTCCCTGAGCTGGCCAACAACAACGAGTGGGCCCGCTACCTCTACTACACAGGTCGTATCAAGGCCATCCAGCTGGAGTACACAGAGGCCAGGAGGACCCTGACCAACGCCCTGAGGAAGGCCCCCCAACACACAGCTGTGGGCTTCAAACAGACAGTTCACAAGTTGCTGATTGTGGTGGAGCTGTTGCTTGGGGAGATACCAGACAGGCTGCAGTTCCGCCAGGCTCCTCTGAAGAGATCACTAGCGCCCTACTTCCTGCTCACCCAGGCTGTCAGGACGGGTAACCTGGCCAAGTTCAACCAGGCTCTGGATCAGTTTGGAGAGAAGTTCCAGGCAGACGGCACCTATACCTTGATCATCCGCCTGCGACACAATGTCATCAAGACAGGTGTGCGTATGATCAGCCTGTCATACTCACGTATATCCCTGGCAGACATCGCTCAGAAGCTCCAGCTGGACAGTTCAGAGGATGCTGAGTTCATAGTGGCCAAGGCTATCCGTGATGGAGTGATCGAAGCCAGCATCAACCATGAGAAGGGCTATGTTCAGTCTAAAGAGACCATGGACATCTACGGTACCAGGGAGCCCCAGCTGGCCTTCCACCAGAGGATCTCCTTCTGCCTGGACATACACAACATGTCTGTCAAGGCCATGAGGTTTCCACCCAAGGCTTACAACAAGGACCTAGAATCAGCAGAGGAGCGCAGAGAGCGGGAGCAGCAGGACCTGGAGTTCGCCAAGGAGATGGCGGAAGATGACGATGACAGTTTCCCATGATCCTCTGAGAGGAACGAGTACAAGGATGCCttattgtttttttccctttctctcccccctctattcttcctcctccctcttgtaATAGTTGTTTTGTTTATTTCTCTGCAGGCACAAGGCCATTTATAACATATGTATGTTAGCATTGTAACATACAATAAGAACACCTCTATTCAACCCTA

Function

GO:

id name namespace
GO:0042176 regulation of protein catabolic process biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0000502 proteasome complex cellular_component
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1330086 lncRNA upstream 1300 33319199 ~ 33319408 (+) True G1166364
TU1330079 lncRNA upstream 7516 33312887 ~ 33313192 (+) True G1166357
TU1330076 lncRNA upstream 12885 33307519 ~ 33307823 (+) True G1166354
TU1330063 lncRNA upstream 15732 33302047 ~ 33304976 (+) True LOC110485152
TU1330027 lncRNA upstream 71500 33248468 ~ 33249208 (+) True G1166318
TU1330092 lncRNA downstream 5375 33332409 ~ 33332663 (+) True G1166369
TU1330315 lncRNA downstream 18927 33345961 ~ 33346185 (+) True G1166571
TU1330331 lncRNA downstream 21786 33348820 ~ 33352461 (+) False G1166573
TU1330333 lncRNA downstream 21786 33348820 ~ 33366167 (+) False G1166573
TU1330334 lncRNA downstream 21786 33348820 ~ 33358178 (+) False G1166573
XM_021556219.2 mRNA upstream 18282 33296758 ~ 33302426 (+) False LOC110485152
XM_021557537.2 mRNA upstream 35901 33271079 ~ 33284807 (+) True LOC110486148
XM_036939741.1 mRNA upstream 65586 33249232 ~ 33255122 (+) True LOC110486149
XM_036940799.1 mRNA upstream 90213 33001356 ~ 33230495 (+) False LOC110486146
NM_001195184.1 mRNA downstream 8413 33335447 ~ 33339722 (+) False csf-3
XM_021556174.2 mRNA downstream 8656 33335690 ~ 33339722 (+) False csf-3
XM_036939716.1 mRNA downstream 8981 33336015 ~ 33339727 (+) True csf-3
XM_021557554.2 mRNA downstream 310775 33637809 ~ 33653835 (+) False LOC110486158
XM_036940808.1 mRNA downstream 310775 33637809 ~ 33653835 (+) False LOC110486158
TU1330025 other upstream 71500 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 90225 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 598246 32715256 ~ 32722462 (+) True ifn2
TU1328699 other upstream 1209975 32001751 ~ 32110733 (+) False LOC110486134
TU1327390 other upstream 2201031 31114311 ~ 31119677 (+) True LOC110486104
TU1330567 other downstream 463606 33790640 ~ 33803665 (+) True G1166779
TU1331612 other downstream 1354154 34681188 ~ 34687650 (+) True LOC110486188
TU1333280 other downstream 2662822 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 2840594 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 2842862 36169896 ~ 36171571 (+) True G1169208

Expression Profile