RNA id: TU1360141


Basic Information

Item Value
RNA id TU1360141
length 472
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1192277
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59457135 ~ 59457606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagctttgcacactcttggcattttctcaaccagcttcacctggaatgtttttccaacagtcttgaaggagttcccacatatgctgagcacttattggctgcttttccttcactttgtggtccaattcatcccaaaccatctcaattgagttgaggttgggtgattgtggaggccaggtcatctgatgcaggactccatcactctcattcttggtcaattagtccttacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaattatatagtcccactaagcacaaaccagatgggatggcgtctcgctgcataatgctgtggtcgccatgctggttaagtgtgcttggaattctaaataaatcactgacagtgtcaccagcaaagcaccatcacaagtcctcctccatgcttcattttgggaaccacacatgcggagatcatctgttcacctgctctgcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1360138 lncRNA downstream 2984 59453930 ~ 59454151 (-) True G1192274
TU1360137 lncRNA downstream 3318 59453421 ~ 59453817 (-) True G1192273
TU1360135 lncRNA downstream 6345 59449665 ~ 59450790 (-) True G1192271
TU1360133 lncRNA downstream 12065 59444827 ~ 59445070 (-) True G1192269
TU1360130 lncRNA downstream 14714 59442157 ~ 59442421 (-) True G1192266
TU1360144 lncRNA upstream 2276 59459882 ~ 59461103 (-) True G1192280
TU1360145 lncRNA upstream 4971 59462577 ~ 59462880 (-) True G1192281
TU1360149 lncRNA upstream 9757 59467363 ~ 59467602 (-) True G1192285
TU1359940 lncRNA upstream 13458 59471064 ~ 59471954 (-) True LOC110516720
TU1360152 lncRNA upstream 19725 59477331 ~ 59477727 (-) True G1192288
XM_036941743.1 mRNA downstream 76235 59289251 ~ 59380900 (-) False LOC110485268
XM_036941744.1 mRNA downstream 76235 59289251 ~ 59380900 (-) False LOC110485268
XM_036941745.1 mRNA downstream 76235 59289251 ~ 59380900 (-) False LOC110485268
XM_036941746.1 mRNA downstream 76235 59289251 ~ 59380900 (-) False LOC110485268
XM_036941747.1 mRNA downstream 168290 59270597 ~ 59288845 (-) True LOC110485272
XM_036941750.1 mRNA upstream 23875 59481481 ~ 59516940 (-) False LOC110487012
XM_036941751.1 mRNA upstream 23875 59481481 ~ 59516940 (-) True LOC110487012
XM_036941752.1 mRNA upstream 66184 59523790 ~ 59543118 (-) False LOC118938337
XM_036941754.1 mRNA upstream 66184 59523790 ~ 59543118 (-) False LOC118938337
XM_036941755.1 mRNA upstream 66184 59523790 ~ 59543119 (-) False LOC118938337
TU1359926 other downstream 142852 59312129 ~ 59314283 (-) True LOC110485268
TU1360061 other downstream 181286 59275141 ~ 59275849 (-) True G1192205
TU1360011 other downstream 335979 59120012 ~ 59121156 (-) True G1192158
TU1359914 other downstream 547903 58906153 ~ 58909232 (-) True G1192082
TU1358988 other downstream 588164 58868063 ~ 58868971 (-) True G1191335
TU1359939 other upstream 11923 59469529 ~ 59470291 (-) False LOC110516720
TU1360475 other upstream 735407 60193013 ~ 60196843 (-) True LOC118938340
TU1360470 other upstream 748176 60205782 ~ 60208270 (-) False G1192519
TU1360471 other upstream 748176 60205782 ~ 60208270 (-) True G1192519
TU1360489 other upstream 761560 60219166 ~ 60314554 (-) True G1192535

Expression Profile