RNA id: XM_036941752.1


Basic Information

Item Value
RNA id XM_036941752.1
length 5117
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC118938337
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59523790 ~ 59543119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAGTCCCTCTGTCCGCGGAAGGAGGCTTTTGGTAGTGCTGTGTGATTCCTACCAGCTGTTTCCCGCCTTGAAAGACATCCGATCAGCTGCAACTACACACATACACGTACAtgcagaaggaaagagagagagattgagagcgcCACACAACGAGGGAACCCTATCAGCTGGAAGTAGAGTAACGTTTAGAACTCCGACTGCTCTGCTACTACATAAGGAATTTTCCGAATTATGAAATTATTCTAGATTTATGAGCAAGGGAATTTGCACCTGAAACTGGGACATATTTTGTGCGTTAATTCATTTGAACCGGGGGACACACAACTGGAGAGGAAAGCATGGAGTATTTCATGGTACCAGCACAGAAGGTGCCCTCCTTGCAACATTTTAGGAAAACGGAGAAGGAAGTGATTGGGGGTCTTTGTAGCCTGGCGAACATTCCTCTGACCCCCGAGACGGCGCGCGACCAGGAGCGGCGGATCCGCCGGGAGATCGCCAACAGCAACGAGCGGCGGCGCATGCAGAGCATCAACTCCGGCTTCCAATCGCTCAAGACGCTCATCCCCCACAGCGACGGAGAGAAACTCAGCAAGGTGGGTCcgagggaggaaaggaagggagagaaactCAGCAAGGCGGCCATCTTGCAGCAGACAGCAGAGTACATCTTCGCTTTGGAGCAGGAGAAGACACGGCTACTGCAACAGAACAGCCAGCTCAAACGCTTCATTCAGGAGTTCAGCGGCTCCTCCCCAAAGAGGAGGCGCGGGGCGGAGGAGAAGGATGAAGGGATCGGTTCCCCAGACATTTTGGAGGAGGAGAAGACGGATGACCTGCggagggagatggtggagctGAGACAGCAGCTGGACAAGGAGCGCTCTGTCCGCATGATGCTGGAGGAGCATTTGAGACAGGAGGAGGTCTGCTGTGTTGTGGTTGGTGGTACTCAGCCTGAACATGTGTTAGGAACTCACTCCGAGCAGCAGGAGAGAGCCAGCACCCCAGCCCACAGCCcacagGTGCTGGCCCCCAGGTCGTCCCCCGCCCCCACCCACCACCCCACGGTCATCGTCCCAGCCCCCGCACCAGCCCCGCCTCCCCATCACGTCACCGTGGTAACCATGGGCCCGGCCTCTGTCATCAACACAGCCTCCACGTCTCGCCAGAACCTGGACACCATTGTGCAGgcCATCCAGCACATTGAGAGCATCcaggagagggtgggggaggaggaaCAGCGCCGGGCGGTGATCGTCACCCAGGGACGCGCCCTCACAGACACAGCGGGGTCCGACACGGCGTCCGACAGCGAGTGGCCAGAGGACTGCTCACTGCCCTGAGGCCTCCCATCACACACAGGGGCCACGAGAGGGGGCCCTGTACAACACCCACAATACTCTGATTATATGGCCATTTATTAGGTTGGATAGACGgatcagactcacacacacactgaactagGATAGTCTACTGTAACTGGAtaattacacatacacacttctttctgtctcccttttcTGCTTTCTTGCTTTTTCTCAAACCGGACAAAAAACATCAGTAGAAAGGTGATGCGTTGACCTGACAGTTCAACATAGCTCAAGCGGCCAACAGCCTTCCAATCGGTCACGAAACACCCATTAAACCCACTCCCTCTCTGGGTCTAGCTCCTCCAGAGGGCTGCCTGAGGATGGAAGTGTCACACCCAGGTCCAGCCCGGTCCCTTGGCTCAGTTGTCCAATGGAGACTCTTTCTCACCTTCTCCAAAACAAACTAAGCAACTTCTGCCCAGCGAGCAGGAGAGCACGCCTGGACAGGACAGGTGTACCCCAACCAGCAGCACAGACGTCCCAGGTGACCCCACACCCCCCATACTAGAGATAATTTCTACAAGAAAtcctctacttcctgtatctCTTCATATACCATATTTCTACCCAGGGGAATCTCCCCTGAGCGATGAGACACTGTGAGCATTTAAAGACTCGCTCCCTAGTAAGAGAAAATGTTGTCGTTTTTCTGTTGTACTTTACAAAGAATTTGTAAGAGTTTGCGTTACAGGTTTTCTTTTTGATCTTGTGTTGTGCTCGGGGGCTCTGGTCAATAAATCACAGGGATTGAACTGAAACGTGACCATATTGACGCAGCTAGAGGTCTGTTCATTTCAGTGGTGCTGTTAGGAGACAAAGCTAAAGCTAAGCTTACTATGGAAAGAGGAGGAGTGCACTTCcggttccctctttctctttctgtgccATCACACGTTTTACTGGGCTGGGTTCCCAGTAGACATTTTTATAGGTGACACTCTCCCCTAATTAGTAGTACAGATGAAAACCTGTAACAGCGATTCACCCTTTCGTGTGCTGCTTCTGACATTTTGGCATCTAGCTTGTTGAATAAGCTAATCGATGAGTACATCTTGAGTTTTAAAAGCCTTTGTGTGTTTTTGCTGTTGTACACAGGGTAGGCTGGTGTATCCAGCTCCACGCTGTAATTAGGTGGGTTGTGTCCGGGGTTAGGAAAGCCCTGTGTTTGGGACAGGCCTCTGTTTGATATtgtaggagaacacacacacccccctgtGCAATTAATGGTCCCAGATCTGATAAAGCTCCTCCCATCATCTGATAAAGCTCCTCCCATCATTTGTCCTTGAGTTTTGGAAACGTCTCTCTGATGTTTGTGAGTTGCATTTGACTCATATGTTTCCACTAATAGGAACACGCGTCCTGGGGGGGGTCAGGTATCTCTGGTATCACCATACTACTCGGCACCGTGATACTTGGCGTGGTATCACGTCATTAGTGAAATGTTGATATTGTGACAACCCCACACTGAAAATAGACACATTTTCTTGCGGTTTCCACAGATTTCTAGCGTGTCGCCGTGCAAAACAAAAATGTTTCGGCTCCTTTGAGCCCTGACCAGTTAGCATCCCTGGCTATTGTCTGTTTTTATTGTATCATTCTCTCTGTAAAGTCTGTCTATGATGGTTCTGTTGAGCCCTGACCAGTTAGCATCCCTGGCTATTGTCTGTTTTAATTGTATCATTCTCTCTGTAAAGTCTGTCTATGATGGTTCTGTTGAGCCCTGACCAGTTAGCATCCCTGGCTATTGTCTGTTTTAATTGTATCATTCTCTCTGTAAAGTCTGTCTATGATGGTTCTGTTGTGCCCCAGATATGACAGTGGTTTTACAGGGATCACAGACACTTTTTCAAAAGCCTGAGTTTTCCCAGGCTGACCTGATTGAAACCTTGTTGTTTTGGGGGTTCTCCTATCCTGTGGAGTGAGGGGGGAATGCAGACACACATGTACAGTCATGGTGGGTTCGAGAGACCCAGATTCTGTGCAGATTGTCAGATCCTTACAATACTTACAGAAATTGTTGAGAATAAGCCCATCTGGATTGCACCCAGGATAACACGCTGCCTGAGGTgtgtggagagcgagagaggggcagcgGTTTGCCATAACACAGCTTCTAATGTGCAGGGTAGGCACTGTGAGGCCAGCCTTAACTCAACCCTGGAGTCAGAGCGAGAAAGAGGTAGAGGCTGGCCACACCTATATAGAGAACGCCTGAACACTGTTCAATAGGATTGATACTGTAAACCTTTATGTCCAGAACCTCCCAATATAAATACACACTTGGTGGCTTATGCTTTGTTTTAGTGTGCTGCGGTTTCCAAAAGGAGATGTGGATGCATTGTTTTTAGACATTCCAGAAGATTCCACCAGTACCTTTAGCATCTCTAACTGGCACTTTTCAAGAGCAAAAAGCAACGGTTTTGTCCGAGGTTATTTTTGGCCACAATACGGCCAATCGCAGAGGAATCGTTTTTAATGTAAAATGATTTGATGGTAAATTGTATTGATTTGTTGATTGTCCCTTATGTCTTCCCTTTGAGTGTAGAGGGAGTCCTTTTACTGCTGGTCAGATGAGACGCAtctccctcctatccttccttctTGGTATTTACAGTGGATTCACACTGGCCACGTTCAAGGCCACTTCATTGCAGTCGCATGCCAGAACCTCACAATGCCTGGATAGGTGTTTTTGTATCAGCTTACCACAAAATGACACCGCCAACTGATGCCGGACTGGAAAGTCAGTGAGGTGGCACGCAGCCATAGGTTGCTGCATGCACTGTGACTGTAATTTAGTCAGCCTGGAACGCAACCACTGTGTTCACCCAGGAAAAAAACCAACTTAGCCATGTTGAGTTCCATTATTTGGAAATGGTCAGTGATTCTTGAGGCGTGCCCTCTATAAACCTTATAATCTGGATCGgtaggggcggtcctctgatccAGTCCTATTGATTGCTGaagaaaatgttgttgtttttgtttggttacgCTTTATGCTATGTCCGTAGTAGCCCTTTTCAGTACCTGTGTTCAAACATTTTCTCTGCTGATGCCAAGCACTGTCCCATAGATGTTTTGTGTATCTTCTATACGATATCTCTGTTAGATACATAACAGATTGCCTGTGAGGTGGGCAGGGgtcagggaggaggtcagtgaatGGGGGGGGTTACGGTTCTAAAGCACTTACTGTACTATATATGGGAGAGGGTTCCTCTTATTTTCTGAAAGGGGGCCTCTCCTCGGCTGAAGCTCTTGATATGTTGTGAGACTAAAACCACACAGCTGTGTATTTCCCCTTTTCCCTGTGTCTGACCCGGTCATATACCctgggtgtattcattaggcaccaaacggaagaaaatggactgaaacagggagataCTACCTGACCTTGCCCAATAAGAAACCGTTGTTTTAATTTTCCattgctacggtgtgccctagtgaatacaacccctgtcccatgtctgtctgtcccccatctctttgtctgtctgtagtcaacACAAGACTCTCATCCTGTCTTCCCTCTCCGTCACTCAcgcactcctctcctccccagctcCTCTTTATCTGTTGTCTTGTGTTTTGTTGGACAGTCAGTCCACACGGTCGTTGAGAAGCTATTATATTTAGAGTTTTTTTTTAAGAAGAAAATTGTGGGTGGATAAAGAAGAGGCTTGTGCCTTTTGTAAAGACAGAATAATAAAGTTTGTACTTCATTTTTTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1360167 lncRNA downstream 21271 59500400 ~ 59502519 (-) True G1192297
TU1360166 lncRNA downstream 23885 59499031 ~ 59499905 (-) True G1192296
TU1360152 lncRNA downstream 46063 59477331 ~ 59477727 (-) True G1192288
TU1359940 lncRNA downstream 51836 59471064 ~ 59471954 (-) True LOC110516720
TU1360149 lncRNA downstream 56188 59467363 ~ 59467602 (-) True G1192285
TU1360233 lncRNA upstream 57044 59600162 ~ 59602287 (-) True G1192349
TU1360243 lncRNA upstream 82703 59625821 ~ 59626678 (-) True G1192357
TU1360241 lncRNA upstream 87876 59630994 ~ 59631455 (-) True G1192356
TU1360239 lncRNA upstream 88905 59632023 ~ 59632924 (-) True G1192355
TU1360276 lncRNA upstream 178779 59721897 ~ 59723417 (-) True G1192381
XM_036941750.1 mRNA downstream 6850 59481481 ~ 59516940 (-) False LOC110487012
XM_036941751.1 mRNA downstream 6850 59481481 ~ 59516940 (-) True LOC110487012
XM_036941749.1 mRNA downstream 51725 59382826 ~ 59472065 (-) False LOC110516720
XM_036941748.1 mRNA downstream 51731 59382826 ~ 59472059 (-) False LOC110516720
XM_036941744.1 mRNA downstream 142890 59289251 ~ 59380900 (-) False LOC110485268
XM_036941763.1 mRNA upstream 101466 59644584 ~ 59648914 (-) True LOC110487009
XM_036941757.1 mRNA upstream 108242 59651360 ~ 59912068 (-) True LOC110515614
XM_036941762.1 mRNA upstream 378359 59921477 ~ 59932329 (-) True LOC110512532
XM_036941764.1 mRNA upstream 394993 59938111 ~ 59958206 (-) True LOC110516349
XM_036941781.1 mRNA upstream 649794 60192912 ~ 60196720 (-) False LOC118938340
TU1359939 other downstream 53499 59469529 ~ 59470291 (-) False LOC110516720
TU1359926 other downstream 209507 59312129 ~ 59314283 (-) True LOC110485268
TU1360061 other downstream 247941 59275141 ~ 59275849 (-) True G1192205
TU1360011 other downstream 402634 59120012 ~ 59121156 (-) True G1192158
TU1359914 other downstream 614558 58906153 ~ 58909232 (-) True G1192082
TU1360475 other upstream 649895 60193013 ~ 60196843 (-) True LOC118938340
TU1360470 other upstream 662664 60205782 ~ 60208270 (-) False G1192519
TU1360471 other upstream 662664 60205782 ~ 60208270 (-) True G1192519
TU1360489 other upstream 676048 60219166 ~ 60314554 (-) True G1192535
TU1360472 other upstream 735160 60278278 ~ 60331404 (-) False LOC110486987

Expression Profile