RNA id: XM_036941764.1


Basic Information

Item Value
RNA id XM_036941764.1
length 4125
RNA type mRNA
GC content 0.52
exon number 26
gene id LOC110516349
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59938111 ~ 59958206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAAACGGGGACGCTGATGTATTCACCTGTTGCAGTGCAGGGGGAGTTTTTGTTTATCCAGAACAATCAACAAACATTTGACTTTTACTCACTCTGATTTACAAAAACAGAATGGAACAATTTCGTGGTGTGGGAGACAAAGCAACACTCGTGAAAATAACAGTACTTCGTGGAAATAACCTGAGGGGCAACAAGGCTGAGTCCATCCTGAACTATGTGAGAGCTGAGTTCAATGGCATCGTCCTGGGAGATTCCCAGAAGCTGGATGCTGCTGTGGATCAGGGCGTGGATTACAACTTCACCTGCAGCTTTGAGTGCTCAGATGCTGCCCACACATTAGATGACATGGCACACAAACCTGTCATATTGACAGTGATTGAGGTCCTTCCCAAGGAGAAGAAGCAGAAGGAGGAGAAGACTGCAGTTATAGGGCAAGCTATAGTGGACTTGCTACCTCTCTTGCATGGTCAGGTCAGCTTCTTATCCACTGTGCTACTTCATCCAACTCCTGGCTCACCTGCGGAGGCAGCCTCACAGGAGGGCAGCTGTAAACCATCTCTAGACGTGACCGTCTGTGTTCCCGAGCCTCTGCTATCCGGCGTCCAGCTGTCTGACTCCAACCTGCTGAAGGTTACTGTGGAGACAGCTTACTCTGTTCCAGAGGTGTGGAACCCTGTCTCTGGGTCTGGTCCTCTCTCCAGCTATGTGGCTGCCCTGCAGGTTCCCCTCACTGCAGAGAAAGAGCAGGTGCTGATGTTCTCCAATGGGCTGCTGAAGGTGGGCGGGGAGAGTGAACCCATGGGAAGACCCAGGAAGTGGCCCCTGGGTCCCCTGTTGGCTCCTGGAGCTCAGTTCATACCTGGTGTCTCCATGGAGGGAGAGCCCATTGAGATGGAGGATGGGGATCTCACCAGCATAGAGGACAGGGATTTCCGGAAAGAAGCGGAGACCAATAAGAAGAGAGTGAGCTGGGACACAGAGCGTCGTTGCTTTCTGGATGCAGAGGGTGCAGCCTGtCTGACCCGTAGGATAGCAGAAAGCAGACTGTGGCCAGTAGAGGTCATGAGGTCACCACAGGTTGGAGCCACTAAGGGAGGGAAGGCTGGCAAAGACAAGGGAgGTGAGGATGAGAcccaactctccttccatggagTGGCATACGTGGACATGGCGCCCCTGTTGTACCCCGGGGCGAGGCGTGTCCGTGGGGCGTACCGGCTCTACCCCTTCTACGACTCTGACCTACTGGTCAAGGCTAAGAGAAACATCAGTGTTCTGAGAGAGAGTATCAGGGCTCCGGCCACCCAGGGCCGAGGTAGGGCCCCCTCCTCCGTAGGCTCCTGCAAGGCGGTCCCTAGTAAGATGCTTGACGGCGGTCACAAGGGCGGGAAGGACACCAAGGAATCGCCCAAAAGGcCCGGGACACAGGGGAAGTCAGCACCCATTGGCACTGATAGTGTGACGCTGGTTGAAACTGAACAGCAGCAACAAGTGAACGCAGAGGGTCAGATGTATGCAGATTCCAGAACCTACATCATCATTGAAATCGCTCTTGAGAAGTCGCTGGTGCCAAAGAGATCACCGGAAGAGTTAGCCAAAAGGGTGATGGAGCTGATACCTCCTAGAGCTCCTTTGCCTCGCAGACCTGCTGGAGCAGAGAGAGCTGTGCAGGAGTACCAGGCCCAGATAGCCAGTGTGGCAGGCCAGGTGTTGGAGCAGTACCAGCAGCTGTTCGGGCCTGCCTTCCTGCCCGGAGAGAAGCCTCTGGACCCAACCAGCCAGGAGCAGCGCAAGACCAAGCTCCTGGGAGAACTCAACTATTCTGGGAAGTACTTTGCTTTCAAGGAGCAGATTAAGTACTCTGTGGTGCGTATCGTGAGGGAGAAGATGCTGCGGACTGAGGCCTTCTCAGATCCTGAGCAGCTGCAGGCCTTCCTCAGCCAGCTCTATGTGTTCCTGGTGGACGAGATGCACGTCGCCCTCAACAAGACTTTGTCAGTGGATGCCCAGGAGACTCAGCCTCGCCCCCTGGTGGACTGTGCCCAGCTCATCCACTTTGCCAAGGAGGCCCAGCTCAACGGGGACTACCAGCTAGCTGCCCAGTACTACCAGGAGCAGCTGACTCGTGACCGTAGCGACCCAGCCCACTGGTTTGACTACGGGGTGTTGTACATGCTGACGGCTGACTACCAGAAGGCTGAGGAGTGCTTCCACTACGCTGTGTCCATGGAGCGAACACACCTGCCCAGtttGCTTATGTGTGGTATCCTGGCAGAGATGGGTGGACGCCTTGAGGAGGCAGAGACATTCTTTGAAGGAGCCACGTGTGTGGACCCGGCCAATGTGGTGGCCTGGACTCTGTTTGGCCTGTTCTATGAGGGCCAGGAGAACTCCATCCAGACCGAGATGGCTTTCCTGGAGGCCACCAAGCAGCAGAGGGCAGCCCTGGTGGTCACCCCACCCTGCAGGGTGGAGACAAGGGTGGAGTCACCAGgcctgggggaggaggagcaggaggtggCGAACTGTGAGTCTTTCACCATCGAGCCAGACGTGGATGGAGACACAGAAGCCAGTGTGGTGACCGGGTCTCAGAGCTGCCAGGGCAACAAGCCTGGGGAGGGATACCAGGGAGGTGCTGAGGCTGAACCTAGTGCCATGCGACACCTAGCAACCCCCACCAGACTAAACACCAccatctatatggagacagtgcAGTTCCTGCTGCAGAACAACGCACTACAGATGGCCCAGAGAGCGCTGGCCCAGGAGCTCTTGTGTCCAGGGGGGGGTCTGAGCAGCTCCTACCACCTGGCCCTGGCCCGCCTGCAGATGCTCAGGGCAGAGTACGGCAGCGCCGAGTCCAGCCTGAAGGAGGCGCTCAACGACAGCTTTCAGGACCCAGATGTATGGGCGTTGTTTGGGCACATACACCATCTGACTGGGGAGTTTGGGAAGGCCCAGGAGTGTTACGAGAGGACCCTGGACTTTGTGACGGatgccacagacacacaccccatCTACCTGCGCCTGGGATCCATCTACCTGCAGGAAGGGGAGTTTCAGAGGGCGAAAACAACTTACCTGCGCGCCTGCAAGAGCTCCCCCTCCTGCCTCACCTGGCTGGGACTAGGGATCGCCTGTTACCGGCTAGGGGAGCTGACTGAAGCAGAGGATGCACTGACAGAGGCCAACATCCTGAACAACGGGAACGCGGAGGTGTGGGGTTACCTGTCTCTAGTTTGTTTGCAGACGGGCAGAAGACTTGAGGCAGAGCAGTCCTACAAATACGCCCTGCAGTTGAACCTACAGAAAGAGGCAGTTCTTCATGAGATCAAGGCACTCCAAGATCATGTTGGCTTTGGAAATCCATGTTTCTGAAGAACAACTGCCGGCACCATCAATGATTTAGGTTAAAAAACAAAGATGAATTGTAATTCTGGTTGGTAAATACCTAATGGTTGGCATCGCAAAGTGACTGAATTGTGGAAGGAATTACACATCAATGACTTGTACACTTGTCTGCATCTTCAGCTATATCTGATTAAAAGTTGTTACTTTTGCATAATGTAGGATATAATATTGTGACACAACAAAGATGTGCAGATCCAGAGAGAGTGTCTGTCCAGAGGTGGAAAAAGTAGTCATTTGTCATACTTGAATTAAAGTAAAGAAACCTTGATGATAATGActgaagtgaaagtcacccataTTGCTTTAGTAAAAGTCTacaagtatctggttttaaatgtacttaagtatcaaaagtttaAGTAAATGCTATAAatctaattccttatattaagcaaaccagatggcacaattctTAGGACAACCAGGGGCACATCAAGAATCAGACCCCATTCGCGCACAATCACAATAATGTACAGTTGAGTAATGTACAGTTTATAAGCTACTTCCTTCTGCATACAacaagtgcattcggaaagtgttcagaccctttcactttttccacattttgttacgttacagccttattctaaaattaattaaattatgTACTCCTCTCattaatatacacacaataccccatgatgacaatgtgaaaacagtttttgtttatgtttgcaaaggggtttgaatacttttccGAATGGACTGAA

Function

GO: NA

KEGG:

id description
K24932 CFAP70, TTC18; cilia- and flagella-associated protein 70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1360383 lncRNA downstream 1017 59936725 ~ 59937094 (-) True G1192462
TU1360376 lncRNA downstream 16886 59919551 ~ 59921225 (-) True G1192459
TU1360374 lncRNA downstream 20899 59916050 ~ 59917212 (-) True G1192458
TU1360373 lncRNA downstream 21141 59916050 ~ 59916970 (-) False G1192458
TU1360368 lncRNA downstream 25167 59912641 ~ 59912944 (-) True G1192453
TU1360389 lncRNA upstream 3840 59962046 ~ 59962441 (-) True G1192468
TU1360390 lncRNA upstream 4674 59962880 ~ 59963084 (-) True G1192469
TU1360391 lncRNA upstream 5087 59963293 ~ 59963571 (-) True G1192470
TU1360392 lncRNA upstream 5802 59964008 ~ 59964874 (-) True G1192471
TU1360395 lncRNA upstream 11057 59969263 ~ 59970322 (-) False G1192473
XM_036941762.1 mRNA downstream 5782 59921477 ~ 59932329 (-) True LOC110512532
XM_036941757.1 mRNA downstream 26043 59651360 ~ 59912068 (-) True LOC110515614
XM_036941763.1 mRNA downstream 289197 59644584 ~ 59648914 (-) True LOC110487009
XM_036941755.1 mRNA downstream 394992 59523790 ~ 59543119 (-) False LOC118938337
XM_036941752.1 mRNA downstream 394993 59523790 ~ 59543118 (-) False LOC118938337
XM_036941781.1 mRNA upstream 234706 60192912 ~ 60196720 (-) False LOC118938340
LOC110486988 mRNA upstream 302514 60260720 ~ 60262829 (-) True LOC110486988
XM_036941778.1 mRNA upstream 316519 60274725 ~ 60297665 (-) False LOC110486987
XM_036941779.1 mRNA upstream 316519 60274725 ~ 60338427 (-) False LOC110486987
XM_036941782.1 mRNA upstream 419647 60377853 ~ 60386935 (-) False LOC118936527
TU1359939 other downstream 467820 59469529 ~ 59470291 (-) False LOC110516720
TU1359926 other downstream 623828 59312129 ~ 59314283 (-) True LOC110485268
TU1360061 other downstream 662262 59275141 ~ 59275849 (-) True G1192205
TU1360011 other downstream 816955 59120012 ~ 59121156 (-) True G1192158
TU1359914 other downstream 1028879 58906153 ~ 58909232 (-) True G1192082
TU1360475 other upstream 234807 60193013 ~ 60196843 (-) True LOC118938340
TU1360470 other upstream 247576 60205782 ~ 60208270 (-) False G1192519
TU1360471 other upstream 247576 60205782 ~ 60208270 (-) True G1192519
TU1360489 other upstream 260960 60219166 ~ 60314554 (-) True G1192535
TU1360472 other upstream 320072 60278278 ~ 60331404 (-) False LOC110486987

Expression Profile