LOC118936527 (LOC106606405)


Basic Information

Item Value
gene id LOC118936527
gene name LOC106606405
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 60377853 ~ 60386961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941782.1
CTTTAGCTAGCTATCAACCCTCGACCACTGGTTCTACCAGTAAGGTTAGCTAATAGTTACTtgttaaaaatgtatgttttccCCTAACGATTTAGCTTGCACTCTAAAGGAAACGATATGGGTCATTTTCAAATGAGCTGAAAACGTGCAGAATCGTATTGAGTTAGTAGTGAATTCTGTCTTTCAACAGATAGCAGTAGTCTAAGTCCCGATTGGAGAAGGGCTCTTCCAGTGGAGCAGCCTGGAGTGAGTGACCAACCATGGGCCGTCTGGACGATGCTGCCAAGCGCAAGGTGGTGGAGCTGCGGCAGGCGGGTCTGAGCTTCCGCAAGATCAAGGCGGTGCTGGAGCTGGAGAACATCCGGGTGTCTGCCCAGGCCATTTACCTGTACCTCAAGGAGTTCCAGAGGAAGAAGGTTCAGAGGGGTGGTGAAAGTGCTGCAGCCCCAGACCCACAGACCACACCTGGGGTTGGAGCAGGGAGGGGAGATGGTGTAAGCCGGGAGGGCTGGAACGACCAGCAAATACGGAATCTACTGAGGGAGGCGTCACGCCACGCAGGCTATGTTGCAGCGTCAGAGTTCGCCAAGCAGTGTCCTGGCTCCAATCCTcctgaggtcaggggtcaggggccGTCTGGGACAGGAAGCGAAGGCGCCAGCAGAGGACAGAGCAACAGGACAGAGAAACCGGAGGAAGGGAAcaagaaggaggatgaggataaggACATCCAGATTGTCAGTGTCACATCATTGGCTCAGAACTCTCAACAGAGGGGTCTTCCACCCGCAGGAGCAGCGGCTGTGACTGTGACAGGCGCCTACATGCGTAAGAGAGCCACGCCCTCGCCAGCTACTAACCCCATACTGGCAGCACGCAAAAGGCTTCTGGATAAGGCTTTGTCTCATAGAGCAAAGATAAGAGACTCTTCTTATCAGTCCTACCAGCAAGTAGCAGCTCTGCTGAGAAGAGAACAGTCTAATGCTTCTGGTTCTGATGTACAGAGACCTGTGGCAGCAGATCAACCACAGTCCTATGACCCAGTCACTCAGAGGCTTACTCAAGTGAGGAATTTGGATGGCCAGCAAGGAGGCAGTGTTCCCAGACAGATGTTCCAGCAGAGAGTCGGTGGCCAAGCTGTCCGCTCCCCACACCCTGCTCCTCCCCGTGTGGGCATCCGGCTCCCcaaccccccaccaccaccaccacccacctccCAGGGTAGTAGCCCTGTCATCCGCCTCCAAAGCCCTGGGAGCCAGGGCATGAACCAGGGCCTTCTCAGGAGAGACAGGAACCCCAGCCCTCAGCAGGCAGCTCACCAGGAGGCTGGAGGGAGATGCGGGGGAGggggtggtggaggtgggggtcTCCAGGAGCAGGTCCAGACCCTGGGCTCTGAGATCCACAGCCTGAGCCTGGCGGTGCGCATgctggtggagcagcagtaccggCTGGAAAGGGAGCAGGTCCAGCAGACCCAGGTCCAGAAGCAGATTCTCAGCACCCTGCAGACCCTGGCCTCAAGACTGGAGGCACCCTGTACCAGCCTCCACCAGCAGCGACAGCATCCCAAAACTCCCCCACCCCCGGTCTTACCTGCCTTAGGCTCTGCCTCCTACAGCCAGGACACATTCCCCTTCAGCCAAGGAGGGTATGCTCAGTGCAGCCAGGCCCAGCCCAGCTACAACGGGATGGACAGCTCCAGCCTGGAGAACATAGAGACCTTCAAACTGTCCGGACAGAGCCCCCATGGCATCAACGGCTTCCAGAcgggcagcagcagtagtaccaCCGATAGCCTCCTgctcacacacacccctacatacACGCTGGCGCACACACAGCCTTACTCGTCAGCCTACACACAGCagccacacactcaaacacacatgccCTCATGCACACAGTCTTACGCCACCACAtacacgcagtcacacacacagtcctatagAGGAACAGACAGTACAGACTGTCCCAGCACCAGCACAGAGGGAGCTCTCCAGGACTGCATGGCCCCCACCCAGGCCTCTGTTGACCTGGACTCAGACATCACAGTCTCCCCACAGGAAACCCAGCTCAACATCATTAAAGTGGAGGcactctaacatgctgaccagaccgtgcgtgcgccatcgtgggcatgttgattttgtccacccacgcCAGACGCAATCAGggcacgcaggttgaaatatcaaaacgaactctgaaccaactatattcatttggggataggtcgaaaagcattaaacatttgtcaatttagttagctagcttgctattgctagctaatttgtcctgggatataaacgcaagcggtgtggtcagcatgtaaggctTCAGTTCACTCGTATCCAGACTTATAGGGACAGTTctctagacacagattaagcctagtccgaGACTTAAAAGCATGTTCAATGTATAATGGAAATTCTGGAGATGGTGCTTTAGTCCAGAACTATGCTTAAATTGGTGTCTGGGAAACCAACCACATATAGGGTTCAGTTCCATAGTTTAAATCCAAAGTTGCTTCTGCTCTGTTCACATTTGTACATTTGATTATCCAATACCTCTCCTTTAGCCAAATGCTTCATTCAGTACATGTTATGTCTTGGGTTTTTAAGGgatttcttgtgtttttgtgtcATTGTGTCATTATGTATGTGTCATTATTTTTAGAACCGTGAATATCCCCGTAGAAATGAATACCACTTCATTGTCCATTCTGAAAGGAACATTTGTCCTCGAGACTATCTACCATTTTTACATGAAACAGTTATTATCAAATCACAAAGAGCAATACAGAAGAAGCATGTCTTATCGTTTTAATAATGCATTTGGATTATGTTGCCATCAGTCTTTACAGAGCATAAAACTCTTCACCAATGCAAGGTCTCTGCTGCCTTCTGCTAGATCAGCCTTAAAGTGCAGAATGTCCTGTCTGTACAGAACTAAATGTACTTGAATAAAGTGCTACATAATATCCAACAAA
>XM_036941783.1
ACTTTGGTCAACATTCATATGAAAATCTTTAGCTAGCTATCAACCCTCGACCACTGGTTCTACCAGTAAGGTTAGCTAATAGTTACTtgttaaaaatgtatgttttccCCTAACGATTTAGCTTGCACTCTAAAGGAAACGATATGGGTCATTTTCAAATGAGCTGAAAACGTGCAGAATCGTATTGAGATAGCAGTAGTCTAAGTCCCGATTGGAGAAGGGCTCTTCCAGTGGAGCAGCCTGGAGTGAGTGACCAACCATGGGCCGTCTGGACGATGCTGCCAAGCGCAAGGTGGTGGAGCTGCGGCAGGCGGGTCTGAGCTTCCGCAAGATCAAGGCGGTGCTGGAGCTGGAGAACATCCGGGTGTCTGCCCAGGCCATTTACCTGTACCTCAAGGAGTTCCAGAGGAAGAAGGTTCAGAGGGGTGGTGAAAGTGCTGCAGCCCCAGACCCACAGACCACACCTGGGGTTGGAGCAGGGAGGGGAGATGGTGTAAGCCGGGAGGGCTGGAACGACCAGCAAATACGGAATCTACTGAGGGAGGCGTCACGCCACGCAGGCTATGTTGCAGCGTCAGAGTTCGCCAAGCAGTGTCCTGGCTCCAATCCTcctgaggtcaggggtcaggggccGTCTGGGACAGGAAGCGAAGGCGCCAGCAGAGGACAGAGCAACAGGACAGAGAAACCGGAGGAAGGGAAcaagaaggaggatgaggataaggACATCCAGATTGTCAGTGTCACATCATTGGCTCAGAACTCTCAACAGAGGGGTCTTCCACCCGCAGGAGCAGCGGCTGTGACTGTGACAGGCGCCTACATGCGTAAGAGAGCCACGCCCTCGCCAGCTACTAACCCCATACTGGCAGCACGCAAAAGGCTTCTGGATAAGGCTTTGTCTCATAGAGCAAAGATAAGAGACTCTTCTTATCAGTCCTACCAGCAAGTAGCAGCTCTGCTGAGAAGAGAACAGTCTAATGCTTCTGGTTCTGATGTACAGAGACCTGTGGCAGCAGATCAACCACAGTCCTATGACCCAGTCACTCAGAGGCTTACTCAAGTGAGGAATTTGGATGGCCAGCAAGGAGGCAGTGTTCCCAGACAGATGTTCCAGCAGAGAGTCGGTGGCCAAGCTGTCCGCTCCCCACACCCTGCTCCTCCCCGTGTGGGCATCCGGCTCCCcaaccccccaccaccaccaccacccacctccCAGGGTAGTAGCCCTGTCATCCGCCTCCAAAGCCCTGGGAGCCAGGGCATGAACCAGGGCCTTCTCAGGAGAGACAGGAACCCCAGCCCTCAGCAGGCAGCTCACCAGGAGGCTGGAGGGAGATGCGGGGGAGggggtggtggaggtgggggtcTCCAGGAGCAGGTCCAGACCCTGGGCTCTGAGATCCACAGCCTGAGCCTGGCGGTGCGCATgctggtggagcagcagtaccggCTGGAAAGGGAGCAGGTCCAGCAGACCCAGGTCCAGAAGCAGATTCTCAGCACCCTGCAGACCCTGGCCTCAAGACTGGAGGCACCCTGTACCAGCCTCCACCAGCAGCGACAGCATCCCAAAACTCCCCCACCCCCGGTCTTACCTGCCTTAGGCTCTGCCTCCTACAGCCAGGACACATTCCCCTTCAGCCAAGGAGGGTATGCTCAGTGCAGCCAGGCCCAGCCCAGCTACAACGGGATGGACAGCTCCAGCCTGGAGAACATAGAGACCTTCAAACTGTCCGGACAGAGCCCCCATGGCATCAACGGCTTCCAGAcgggcagcagcagtagtaccaCCGATAGCCTCCTgctcacacacacccctacatacACGCTGGCGCACACACAGCCTTACTCGTCAGCCTACACACAGCagccacacactcaaacacacatgccCTCATGCACACAGTCTTACGCCACCACAtacacgcagtcacacacacagtcctatagAGGAACAGACAGTACAGACTGTCCCAGCACCAGCACAGAGGGAGCTCTCCAGGACTGCATGGCCCCCACCCAGGCCTCTGTTGACCTGGACTCAGACATCACAGTCTCCCCACAGGAAACCCAGCTCAACATCATTAAAGTGGAGGcactctaacatgctgaccagaccgtgcgtgcgccatcgtgggcatgttgattttgtccacccacgcCAGACGCAATCAGggcacgcaggttgaaatatcaaaacgaactctgaaccaactatattcatttggggataggtcgaaaagcattaaacatttgtcaatttagttagctagcttgctattgctagctaatttgtcctgggatataaacgcaagcggtgtggtcagcatgtaaggctTCAGTTCACTCGTATCCAGACTTATAGGGACAGTTctctagacacagattaagcctagtccgaGACTTAAAAGCATGTTCAATGTATAATGGAAATTCTGGAGATGGTGCTTTAGTCCAGAACTATGCTTAAATTGGTGTCTGGGAAACCAACCACATATAGGGTTCAGTTCCATAGTTTAAATCCAAAGTTGCTTCTGCTCTGTTCACATTTGTACATTTGATTATCCAATACCTCTCCTTTAGCCAAATGCTTCATTCAGTACATGTTATGTCTTGGGTTTTTAAGGgatttcttgtgtttttgtgtcATTGTGTCATTATGTATGTGTCATTATTTTTAGAACCGTGAATATCCCCGTAGAAATGAATACCACTTCATTGTCCATTCTGAAAGGAACATTTGTCCTCGAGACTATCTACCATTTTTACATGAAACAGTTATTATCAAATCACAAAGAGCAATACAGAAGAAGCATGTCTTATCGTTTTAATAATGCATTTGGATTATGTTGCCATCAGTCTTTACAGAGCATAAAACTCTTCACCAATGCAAGGTCTCTGCTGCCTTCTGCTAGATCAGCCTTAAAGTGCAGAATGTCCTGTCTGTACAGAACTAAATGTACTTGAATAAAGTGCTACATAATATCCAACAAA
>TU1360636
cagcagtagtaccaCCGATAGCCTCCTgctcacacacacccctacatacACGCTGGCGCACACACAGCCTTACTCGTCAGCCTACACACAGCagccacacactcaaacacacatgccCTCATGCACACAGTCTTACGCCACCACAtacacgcagtcacacacacagtcctatagAGGAACAGACAGTACAGACTGTCCCAGCACCAGCACAGAGGGAGCTCTCCAGGACTGCATGGCCCCCACCCAGGCCTCTGTTGACCTGGACTCAGACATCACAGTCTCCCCACAGGAAACCCAGCTCAACATCATTAAAGTGGAGGcactctaacatgctgaccagaccgtgcgtgcgccatcgtgggcatgttgattttgtccacccacgcCAGACGCAATCAGggcacgcaggttgaaatatcaaaacgaactctgaaccaactatattcatttggggataggtcgaaaagcattaaacatttgtcaatttagttagctagcttgctattgctagctaatttgtcctgggatataaacgcaagcggtgtggtcagcatgtaaggctTCAGTTCACTCGTATCCAGACTTATAGGGACAGTTctctagacacagattaagcctagtccgaGACTTAAAAGCATGTTCAATGTATAATGGAAATTCTGGAGATGGTGCTTTAGTCCAGAACTATGCTTAAATTGGTGTCTGGGAAACCAACCACATATAGGGTTCAGTTCCATAGTTTAAATCCAAAGTTGCTTCTGCTCTGTTCACATTTGTACATTTGATTATCCAATACCTCTC

Function

NR:

description
uncharacterized protein LOC110538820

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941782.1 False 2998 mRNA 0.52 4 60377853 60386935
XM_036941783.1 False 2997 mRNA 0.52 4 60377853 60386961
TU1360636 True 801 lncRNA 0.48 1 60378270 60379070

Neighbor

gene id symbol gene type direction distance location
LOC110486987 cyp2k4 coding downstream 39426 60274725 ~ 60367022 (-)
LOC110486988 LOC106606456 coding downstream 115024 60260720 ~ 60262829 (-)
LOC118938340 NA coding downstream 181133 60192912 ~ 60196843 (-)
LOC110516349 cfap70 coding downstream 419647 59938111 ~ 59958206 (-)
LOC110512532 LOC106606500 coding downstream 445524 59921477 ~ 59932329 (-)
LOC110486979 LOC106606406 coding upstream 16656 60403617 ~ 60408720 (-)
LOC110486976 LOC106606471 coding upstream 77565 60460043 ~ 60565934 (-)
LOC110538808 LOC106601873 coding upstream 619865 61005929 ~ 61026251 (-)
LOC110486965 LOC100135781 coding upstream 1159304 61546265 ~ 61550711 (-)
LOC110512085 LOC106601929 coding upstream 1559691 61946652 ~ 62016705 (-)
G1192531 NA non-coding downstream 7513 60367628 ~ 60370340 (-)
G1192533 NA non-coding downstream 37648 60296126 ~ 60340205 (-)
G1192619 NA non-coding downstream 78950 60208767 ~ 60298903 (-)
G1192606 NA non-coding downstream 133456 60182643 ~ 60244397 (-)
G1192705 NA non-coding upstream 70639 60457600 ~ 60458463 (-)
G1192706 NA non-coding upstream 71761 60458722 ~ 60459300 (-)
G1192754 NA non-coding upstream 176670 60563631 ~ 60564207 (-)
G1192762 NA non-coding upstream 204875 60591836 ~ 60592136 (-)
G1192535 NA other downstream 63299 60219166 ~ 60314554 (-)
G1192519 NA other downstream 169583 60205782 ~ 60208270 (-)
LOC110516720 adcy9 other downstream 907562 59382826 ~ 59472065 (-)
G1192757 NA other upstream 185409 60572370 ~ 60575197 (-)
G1192815 NA other upstream 254714 60641675 ~ 60642185 (-)
G1193386 NA other upstream 888784 61275745 ~ 61277658 (-)
G1192673 NA non-coding upstream 2271 60381341 ~ 60381568 (-)
G1192674 NA non-coding upstream 7388 60386458 ~ 60386673 (-)

Expression


Co-expression Network