LOC110486965 (LOC100135781)


Basic Information

Item Value
gene id LOC110486965
gene name LOC100135781
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 61546265 ~ 61550711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941796.1
GATCTTGGAAGTTTGACGCGAACATTAAATTGCGACTTTTTGTCAGAAATTGTTTTATTTCCAAGATAAGTATAAATTAGAGTGCGTTTGCAGCGTGCCTATTCCATCGGGTCGCAAGAAAACGTGCTTTGAATAGGCGACTTTTGAAAGGACTTCACATTAACATTCTGACAGTTTGCAGGAGTGCATCTTTGTCAACCAATTTGCGCAGCGAACTCAGTGACATTCATTGCAGCCCGTGCGCACAGCAGCAGTTGGATTCTAAAGTCTTGATAGGAAGGAATTTTTCCCTCCAAGAGCAATTCATTGCATTAGCTCAGCGGTCATTTTTTTTCGCATGAATCTACTCGACCCCTTCCTGAAGATGACAGACGAACAGGAGAAGTGTTTCTCTGACGCTCCAAGCCCCAGCATGTCTGAGGATTCGGTCGGCTCGCCGTGCCCGTCTGGCTCCGGTTCCGACACCGAGAATACCAGGCCGTCCGATAATCATCTCTTACTGGGTCCAGACGGCGTGCTCGGCGAGTTCAAGAAGGCTGACCAAGACAAGTTCCCTGTATGTATCAGAGATGCGGTGTCTCAGGTGCTGAAGGGTTACGACTGGACCTTGGTGCCCATGCCCGTCCGACTGAACGGCTCCAGCAAAAACAAGCCACATGTCAAGAGACCCATGAACGCGTTCATGGTGTGGGCTCAAGCCGCCCGGAGGAAACTGGCGGACCAGTACCCACATCTCCACAATGCAGAACTCAGCAAAACCCTGGGGAAACTCTGGAGATTACTCAACGAAGGCGAGAAGCGTCCGTTCGTAGAGGAGGCTGAACGCTTGAGGGTGCAGCATAAGAAAGATCACCCCGACTACAAGTACCAGCCCAGAAGGAGAAAATCCGTGAAGAACGGGCAGAGCGAGCCAGAGGACGGCGAACAAACCCACATCTCTTCCGGTGACATCTTTAAAGCTCTCCAGCAAGCCGACTCGCCCGCGTCCAGCATGGGAGAAGTGCATTCTCCCAGTGAACATTCAGCAGGCCAGTCCCAGGGCCCACCTACACCACCGACCACCCCCAAAACAGACCTGGCTGTGGGCAAGGCCGACCTGAAGCGTGAGGGCCGCCCCCTGCAAGAGGGCACGGGCCGCCAGCTCAACATCGACTTCCGAGACGTGGATATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAAGCTTTCGATGTCCATGAGTTCGACCAGTACTTACCGCCCCACGGGCACCCCGGCATGCCTGGCATCAACGGCGCCCAGACGAGCTACACGGGCAGCTACCGCGGCATCAGCTCTAACTCCATTGGCCAGGTGGGTGCTGGAGGCCATGGCTGGATGtccaagcagcagcagcagcccatCTCCATCCtgagtggaggtggaggtacTGGGGGAGAGCAAGGCCAGAGCCAGGGGAGAACCACTCAGATCAAGACGGAGCAGCTGAGCCCCAGTCACTACAGTGAGCAGCAGGGCTCCCCTCCCCAGCATGTCACCTATGGTTCATTCAACCTGCAGCACTACAGTGCCTCATCCTACCCCTCCATTACCCGCACCCAGTATGACTATTCTGATCACCAGGGCGGCGCCAACTCTTATTATAGCCATGCAGGTGCCCAAGGCTCAGGGCTTTATTCCTTCAGCAGCTATATGAGCCCCAGCCAGAGGCCCATGTATACCCCCATCGCCGACCCCACCGGAGTGCCCTCGGTGCCCACCCAGACCCACAGTCCACAGCACTGGGAGCAGCAGCCTGTCTACACACAGCTCTCCAGGCCCTGAGAGTCCAGAAGTTAGAGGTCAGCCCTTAGCACAGACTGTCCCATAAGAACCCATCTCCTACCAGAGACTCTTATCTCCCAGAATCCTCAGGGGCCCACAGGCCTCTACGCCAACACACCCTCCACCGCCAATATAAAAACATTCAAGAACTTTTTCAAAGTAATGAACATTTATTATCTTGGGAACAACGGCTCACGACAGTGCCTTTTTTAACGCTCGGAGTTGTGATTATATTTTTATAGGTATAATGTTAAAAGAAACTCCGTTTTGAAAAGAGGAATCCTCCGTGAGGATATATTTGTTATAAATATTTTAGTATGTACTGTGTATGTGTTCTGAACTGTCTTTTGGTACTATATCTTTCGGGGGATTTATACGTTTAATGAGGAAGAGATGCTTTAGGTGAACAACGTCCTCCGCGGCCTTACTTCTCGCTCATGTATTTTTGTACAGGAGCAGGAAGTCAAAAGAAAATAGTCCCCCTACTCACTGCCTGTCCTCTTTTAATACATTCTGCTTTGATTCTCATGTACATATCTTACTGTAATTGTTTACGAGATCTTATAAGAACTGAGCAAAGTTGGTGTTTAAATAGTTTATGGCCGTGACTTATTATGTGACCATGTCATCAGTGAATTAGACAAATTATCGCTATTTTCTTGTTGCTGCGTTAGCAATTAACACATCAGCGCAAGTTATTGTGTTGGGAATGCTAATAGCATTAGAAAGTGCCATATAGTTACACCAGGGGCCTTACTGACTGTGTTGGTAGATGTGACTGAGAAATGCTTTGAATTGCCTTCATGCCGTTGGTGCCTGTTGAAGCGCAGTAGAGAGACTCTTTACATTAGCGATGCTAGCGCAGCAGTGTAGCCTAGAAACCACAGCTGAGTTCTCACTTCCTGTCTGTGGAGAGATACAGGAAGTGGCCTTTGACCCCCAGCAGTCTCCCTTCCAGTTGTTGTTCCTCTGGCCTCTTATTCCTTACAGTCTTAACATCTAATTTATTCATTAGCAATTAATTTTATTTGAAAAGTAATAACTATTTTGCATTTTATTCCTTTTTAATTCAGCAGCGACTAATTGAGATGAGAAAATATGAACTCTTCTGCAGATGGGTTAGCTGTTTCCATGTGGTACAGATTGTTCTAAGCATCTTTGTTTATTTATAATTTGTAAATGTTTTCAGTTGAAATAGTTATTTTGATGATCTAGTTGTGTACAGATGAATTGTGATCAGACTTGATCTGAAATATGGGAAAAAGAAAAAGCTGGGCGTTGTTTTATTCTGACAGATATGGATATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGTTGGAGCTGTGGCTGCAGTCTTTCTATAGAATCACCAGcatactttttttgtttttgaaaaaagTTGTGTTCTTTATTCTCTATTCCATATCTTCTCATGTTGGCATCTTTGTAATTCAACTGAATTCTTGTTTTCCTAGGTAAAACACGCCATTGTCTTAAAAGAAGCTTATCTTTTGTATTATATTGTTTGCAATAAAAGAAAACATATTGAAAATAAA
>XM_036941797.1
GATCTTGGAAGTTTGACGCGAACATTAAATTGCGACTTTTTGTCAGAAATTGTTTTATTTCCAAGATAAGTATAAATTAGAGTGCGTTTGCAGCGTGCCTATTCCATCGGGTCGCAAGAAAACGTGCTTTGAATAGGCGACTTTTGAAAGGACTTCACATTAACATTCTGACAGTTTGCAGGAGTGCATCTTTGTCAACCAATTTGCGCAGCGAACTCAGTGACATTCATTGCAGCCCGTGCGCACAGCAGCAGTTGGATTCTAAAGTCTTGATAGGAAGGAATTTTTCCCTCCAAGAGCAATTCATTGCATTAGCTCAGCGGTCATTTTTTTTCGCATGAATCTACTCGACCCCTTCCTGAAGATGACAGACGAACAGGAGAAGTGTTTCTCTGACGCTCCAAGCCCCAGCATGTCTGAGGATTCGGTCGGCTCGCCGTGCCCGTCTGGCTCCGGTTCCGACACCGAGAATACCAGGCCGTCCGATAATCATCTCTTACTGGGTCCAGACGGCGTGCTCGGCGAGTTCAAGAAGGCTGACCAAGACAAGTTCCCTGTATGTATCAGAGATGCGGTGTCTCAGGTGCTGAAGGGTTACGACTGGACCTTGGTGCCCATGCCCGTCCGACTGAACGGCTCCAGCAAAAACAAGCCACATGTCAAGAGACCCATGAACGCGTTCATGGTGTGGGCTCAAGCCGCCCGGAGGAAACTGGCGGACCAGTACCCACATCTCCACAATGCAGAACTCAGCAAAACCCTGGGGAAACTCTGGAGATTACTCAACGAAGGCGAGAAGCGTCCGTTCGTAGAGGAGGCTGAACGCTTGAGGGTGCAGCATAAGAAAGATCACCCCGACTACAAGTACCAGCCCAGAAGGAGAAAATCCGTGAAGAACGGGCAGAGCGAGCCAGAGGACGGCGAACAAACCCACATCTCTTCCGGTGACATCTTTAAAGCTCTCCAGCAAGCCGACTCGCCCGCGTCCAGCATGGGAGAAGTGCATTCTCCCAGTGAACATTCAGGCCAGTCCCAGGGCCCACCTACACCACCGACCACCCCCAAAACAGACCTGGCTGTGGGCAAGGCCGACCTGAAGCGTGAGGGCCGCCCCCTGCAAGAGGGCACGGGCCGCCAGCTCAACATCGACTTCCGAGACGTGGATATCGGCGAGCTGAGCAGCGACGTCATCTCCAACATCGAAGCTTTCGATGTCCATGAGTTCGACCAGTACTTACCGCCCCACGGGCACCCCGGCATGCCTGGCATCAACGGCGCCCAGACGAGCTACACGGGCAGCTACCGCGGCATCAGCTCTAACTCCATTGGCCAGGTGGGTGCTGGAGGCCATGGCTGGATGtccaagcagcagcagcagcccatCTCCATCCtgagtggaggtggaggtacTGGGGGAGAGCAAGGCCAGAGCCAGGGGAGAACCACTCAGATCAAGACGGAGCAGCTGAGCCCCAGTCACTACAGTGAGCAGCAGGGCTCCCCTCCCCAGCATGTCACCTATGGTTCATTCAACCTGCAGCACTACAGTGCCTCATCCTACCCCTCCATTACCCGCACCCAGTATGACTATTCTGATCACCAGGGCGGCGCCAACTCTTATTATAGCCATGCAGGTGCCCAAGGCTCAGGGCTTTATTCCTTCAGCAGCTATATGAGCCCCAGCCAGAGGCCCATGTATACCCCCATCGCCGACCCCACCGGAGTGCCCTCGGTGCCCACCCAGACCCACAGTCCACAGCACTGGGAGCAGCAGCCTGTCTACACACAGCTCTCCAGGCCCTGAGAGTCCAGAAGTTAGAGGTCAGCCCTTAGCACAGACTGTCCCATAAGAACCCATCTCCTACCAGAGACTCTTATCTCCCAGAATCCTCAGGGGCCCACAGGCCTCTACGCCAACACACCCTCCACCGCCAATATAAAAACATTCAAGAACTTTTTCAAAGTAATGAACATTTATTATCTTGGGAACAACGGCTCACGACAGTGCCTTTTTTAACGCTCGGAGTTGTGATTATATTTTTATAGGTATAATGTTAAAAGAAACTCCGTTTTGAAAAGAGGAATCCTCCGTGAGGATATATTTGTTATAAATATTTTAGTATGTACTGTGTATGTGTTCTGAACTGTCTTTTGGTACTATATCTTTCGGGGGATTTATACGTTTAATGAGGAAGAGATGCTTTAGGTGAACAACGTCCTCCGCGGCCTTACTTCTCGCTCATGTATTTTTGTACAGGAGCAGGAAGTCAAAAGAAAATAGTCCCCCTACTCACTGCCTGTCCTCTTTTAATACATTCTGCTTTGATTCTCATGTACATATCTTACTGTAATTGTTTACGAGATCTTATAAGAACTGAGCAAAGTTGGTGTTTAAATAGTTTATGGCCGTGACTTATTATGTGACCATGTCATCAGTGAATTAGACAAATTATCGCTATTTTCTTGTTGCTGCGTTAGCAATTAACACATCAGCGCAAGTTATTGTGTTGGGAATGCTAATAGCATTAGAAAGTGCCATATAGTTACACCAGGGGCCTTACTGACTGTGTTGGTAGATGTGACTGAGAAATGCTTTGAATTGCCTTCATGCCGTTGGTGCCTGTTGAAGCGCAGTAGAGAGACTCTTTACATTAGCGATGCTAGCGCAGCAGTGTAGCCTAGAAACCACAGCTGAGTTCTCACTTCCTGTCTGTGGAGAGATACAGGAAGTGGCCTTTGACCCCCAGCAGTCTCCCTTCCAGTTGTTGTTCCTCTGGCCTCTTATTCCTTACAGTCTTAACATCTAATTTATTCATTAGCAATTAATTTTATTTGAAAAGTAATAACTATTTTGCATTTTATTCCTTTTTAATTCAGCAGCGACTAATTGAGATGAGAAAATATGAACTCTTCTGCAGATGGGTTAGCTGTTTCCATGTGGTACAGATTGTTCTAAGCATCTTTGTTTATTTATAATTTGTAAATGTTTTCAGTTGAAATAGTTATTTTGATGATCTAGTTGTGTACAGATGAATTGTGATCAGACTTGATCTGAAATATGGGAAAAAGAAAAAGCTGGGCGTTGTTTTATTCTGACAGATATGGATATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGCTGTGGCTGCAGTGTGAAGATGTCTATCATGGTTATTGGAGTTGGAGCTGTGGCTGCAGTCTTTCTATAGAATCACCAGcatactttttttgtttttgaaaaaagTTGTGTTCTTTATTCTCTATTCCATATCTTCTCATGTTGGCATCTTTGTAATTCAACTGAATTCTTGTTTTCCTAGGTAAAACACGCCATTGTCTTAAAAGAAGCTTATCTTTTGTATTATATTGTTTGCAATAAAAGAAAACATATTGAAAATAAA

Function

NR:

description
SOX9

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941796.1 False 3634 mRNA 0.47 3 61546265 61550711
XM_036941797.1 True 3631 mRNA 0.47 3 61546265 61550711

Neighbor

gene id symbol gene type direction distance location
LOC110538808 LOC106601873 coding downstream 520014 61005929 ~ 61026251 (-)
LOC110486976 LOC106606471 coding downstream 980331 60460043 ~ 60565934 (-)
LOC110486979 LOC106606406 coding downstream 1137545 60403617 ~ 60408720 (-)
LOC118936527 LOC106606405 coding downstream 1159304 60377853 ~ 60386961 (-)
LOC110486987 cyp2k4 coding downstream 1207838 60274725 ~ 60367022 (-)
LOC110512085 LOC106601929 coding upstream 395941 61946652 ~ 62016705 (-)
LOC110487040 LOC106606439 coding upstream 468994 62019705 ~ 62025559 (-)
LOC110487033 LOC106606440 coding upstream 479965 62030676 ~ 62064793 (-)
LOC110487041 LOC105013038 coding upstream 516393 62067104 ~ 62098264 (-)
LOC110487058 LOC106606437 coding upstream 570074 62118425 ~ 62160094 (-)
G1193528 NA non-coding downstream 13206 61532807 ~ 61533059 (-)
G1193500 NA non-coding downstream 53120 61490006 ~ 61493145 (-)
G1193495 NA non-coding downstream 63875 61481707 ~ 61482390 (-)
G1193477 NA non-coding downstream 79762 61466220 ~ 61466503 (-)
G1193465 NA non-coding downstream 93306 61452741 ~ 61452959 (-)
G1193542 NA non-coding upstream 2037 61552748 ~ 61553551 (-)
G1193544 NA non-coding upstream 4272 61554983 ~ 61555266 (-)
G1193545 NA non-coding upstream 5996 61556707 ~ 61557104 (-)
G1193578 NA non-coding upstream 41409 61592120 ~ 61592411 (-)
G1193579 NA non-coding upstream 44341 61595052 ~ 61595251 (-)
G1193386 NA other downstream 268607 61275745 ~ 61277658 (-)
G1192815 NA other downstream 904080 60641675 ~ 60642185 (-)
G1192757 NA other downstream 971068 60572370 ~ 60575197 (-)
G1193568 NA other upstream 34063 61584774 ~ 61585260 (-)
G1194074 NA other upstream 519398 62070109 ~ 62070835 (-)
LOC118938342 LOC106606436 other upstream 613424 62164135 ~ 62174550 (-)
G1194306 LOC106600182 other upstream 905193 62455904 ~ 62499352 (-)

Expression


Co-expression Network