G1194306 (LOC106600182)


Basic Information

Item Value
gene id G1194306
gene name LOC106600182
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62455904 ~ 62499352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1362548
TTTGCATGTTCTAGTGTAGTTTACAATACAACAGTTCTTTAGCTCCACGAGTAAACATTTTATCTTACGCTATAGAGATATTTTCCAAGATGACTTGGTCTGTAAGCAGTTGTTTCATCACTCTGGTCGTTTTGTTCCTTTGGCGGATCGAAGACATTGCAGAAGCTTGCAAATGCGCTCCTGTGCATCTTCAACAGGCTTTTTGCAACGCAGACGTCGTGATCAGGGCAAAGGTGGTTGGTGTGGAAGTTGTGTCTGGTAACACCAAGTATGACATCCAACAGATCAAGATGTTCAAAGGTCCTGATCGGGTTATCCACGCCATCTTCACTTCATCCTCCTCAGCCTCGTGTGGCGTGACCCTGGAAATCAACAAGGAGTATCTCTTCACAGGCAGCCTAAATACTGATGGGAGGATGCATATAGTCACGTGTGACTTTATTCAGTACTGGGACGACTTGAATGGCACACAAAAGAAGAGCTTGACTCAACGCTACCGAACCGGCTGTGCTTGCACGATCATCCGCTGCTCTTCCCTCCCCTGTCCCGTCAGCGCCCCAGATGAGTGCCTTTGGACAGACTGGTTGTTGAACGATGGCCAAAGCGGACCCCAGGCCAAGTACTCTGCCTGTCTCATGAA
>TU1362549
ATTTATGGCAACCGGGCAAATTGAGCCTGCTCTGAGATTGTCCCTTTTAAGGAGGGCATTTTTTTCCAATGGAGTTGCTTTGGTTCTGGATTAATAGACTTCTCAGCCTACCACTGGCTTGGTTCTGACTGTGGGAGGAGCTCACAGCCTGCAATAAAACGGGCTGATTACATCGAATGAAAACAGACTTCTAGGtgttagtctgtctgggaacatCTTTGCATGTTCTAGTGTAGTTTACAATACAACAGTTCTTTAGCTCCTCGAGTAAACATTTTATCTTACGCTATAGATATATTTTCCAAGATGCCTTGGTCTGTAAGCAGTTGTTTCATCACTCTGGTCGTTTTGTTCCTTTGGCGGATCGAAGACATTGCAGAAGCTTGCAGATGCGCTCCTGTGCATCTTCAACAGGCTTTTTGCAACGCAGACGTCGTGATCAGGGCAAAGGTGGTTGGTGTGGAAGTTGTGTCTGGTAACACCAAGTATGACGTCAAACAGATCGAGCCTCGTGTGGTGTGACCCTGGAAATCAACAAGGAGTATCTCTTCACAGGCAGCCTAAATACTGATGGGAGGATGCATATAGTCACGTGTGACTTTATTCAGTACTGGGACGACTTGAATGGCACACAAAAGAAGAGCTTGACTCAACGCTACCGAACCGGCTGTGCTTGCACGATCATCCGCTGCTCTTCCCTCCCCTGTCCCGTCAGCGCCCCAGATGAGTGCCTTTGGACAGACTGGTTGTTGAACGATGGCCAAAGCGGACCCCAGGCCAAGTACTCTGCCTGTCTCATGAA
>TU1362550
ATTTATGGCAACCGGGCAAATTGAGCCTGCTCTGAGATTGTCCCTTTTAAGGAGGGCATTTTTTTCCAATGGAGTTGCTTTGGTTCTGGATTAATAGACTTCTCAGCCTACCACTGGCTTGGTTCTGACTGTGGGAGGAGCTCACAGCCTGCAATAAAACGGGCTGATTACATCGAATGAAAACAGACTTCTAGGtgttagtctgtctgggaacatCTTTGCATGTTCTAGTGTAGTTTACAATACAACAGTTCTTTAGCTCCTCGAGTAAACATTTTATCTTACGCTATAGATATATTTTCCAAGATGCCTTGGTCTGTAAGCAGTTGTTTCATCACTCTGGTCGTTTTGTTCCTTTGGCGGATCGAAGACATTGCAGAAGCTTGCAGATGCGCTCCTGTGCATCTTCAACAGGCTTTTTGCAACGCAGACGTCGTGATCAGGGCAAAGGTGGTTGGTGTGGAAGTTGTGTCTGGTAACACCAAGTATGACGTCAAACAGATCGAGCCTCGTGTGGTGTGACCCTGGAAATCAACAAGGAGTATCTCTTCACAGGCAGCCTAAATACTGATGGGAGGATGCATATAGTCACCTGTGACTTTATTCAGTACTGGGACGACTTGAATGGCACACAAAAGAAGAGCTTGACTCAACGCTACCGAACCGGCTGTGCTTGCACGATCATCCGCTGCTCTTCCCTCCCCTGTCCCGTCAGCGCCCCAGATGAGTGCCTTTGGACAGACTGGTTGTTGAACGATGGCCAAAGCGGACCCCAGGCCAAGTACTCTGCCTGTCTCATGAATTTTGATGGGTCCTGTGCCTGGTACAGGGGGATGACTCCATCCAAGAAGTAGTTCCTGGATATTGACTACTCCATAGTAACTCCACAGGCCTTCCACTCACTGCTCAGTGGCTAAATATGCCTGCAATTTAAAAGCTGGTCACTTGTGCAATAAAAATAAACTACT

Function

NR:

description
metalloproteinase inhibitor 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1362548 False 640 TUCP 0.48 5 62455904 62459898
TU1362549 False 802 lncRNA 0.48 5 62455904 62499352
TU1362550 True 968 lncRNA 0.47 5 62495050 62499352

Neighbor

gene id symbol gene type direction distance location
LOC110487076 LOC106606418 coding downstream 26334 62422481 ~ 62429570 (-)
LOC110485307 LOC106606399 coding downstream 94317 62330233 ~ 62361587 (-)
LOC110487061 roa2 coding downstream 128872 62324031 ~ 62327032 (-)
LOC110487063 LOC106606447 coding downstream 136537 62317651 ~ 62319367 (-)
LOC110487059 notum coding downstream 250600 62184006 ~ 62205304 (-)
LOC110487064 lg3bp coding upstream 6941 62506293 ~ 62512429 (-)
LOC118938348 LOC106606427 coding upstream 400255 62899607 ~ 62926919 (-)
LOC110487151 LOC105012845 coding upstream 437816 62937168 ~ 62957406 (-)
LOC110486089 LOC106606381 coding upstream 533060 63032412 ~ 63218815 (-)
LOC110517310 LOC106601910 coding upstream 807829 63307181 ~ 63309144 (-)
G1194284 LOC106606433 non-coding downstream 54301 62397025 ~ 62401603 (-)
G1194277 NA non-coding downstream 102347 62353358 ~ 62353557 (-)
G1194276 NA non-coding downstream 102771 62352884 ~ 62353133 (-)
G1194121 NA non-coding downstream 219677 62235859 ~ 62236227 (-)
G1194334 NA non-coding upstream 27785 62527137 ~ 62527582 (-)
G1194264 NA non-coding upstream 65395 62564747 ~ 62567053 (-)
G1194367 LOC106601941 non-coding upstream 70593 62569945 ~ 62580456 (-)
G1194385 NA non-coding upstream 91290 62590642 ~ 62590922 (-)
G1194395 NA non-coding upstream 101170 62600522 ~ 62600793 (-)
LOC118938342 LOC106606436 other downstream 281404 62164135 ~ 62174550 (-)
G1194074 NA other downstream 385069 62070109 ~ 62070835 (-)
LOC110512085 LOC106601929 other downstream 439304 61946652 ~ 62016705 (-)
G1193568 NA other downstream 870644 61584774 ~ 61585260 (-)
G1193386 NA other downstream 1178246 61275745 ~ 61277658 (-)
G1194521 NA other upstream 231602 62730954 ~ 62735710 (-)
G1194684 NA other upstream 436434 62935786 ~ 62937073 (-)
G1194933 NA other upstream 637688 63137040 ~ 63137722 (-)
LOC118938346 LOC106606432 coding upstream 10567 62469918 ~ 62474424 (-)
LOC118938345 LOC106595712 coding upstream 35141 62495039 ~ 62499190 (-)

Expression


Co-expression Network