LOC118938348 (LOC106606427)


Basic Information

Item Value
gene id LOC118938348
gene name LOC106606427
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62899607 ~ 62926919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941853.1
CCCTCTCAGTAGTGTCTAATTATACATCGGTCGGCTACTCTCTCTCCCGTTATTTACTATTTCAAAGCGCAGTTGTCTTTTATTATTCGTTCCATTATATTCGACAATATCAAAACAGAACCCTCTTGACCAGATGTTGCCGAGAATAATTTGACAAGTCAGCACTAGACGGCGGGGAGAAGAATAAAGACCATGTTGGAGAGCTTTGCGCATTTCTCCATCTCGGGTGCCCGGTCCAGAACGTTATGTGATACGGATTTCTTTGTGACCATGACGTTCATTTGAATTGCTCACGGTTTTGTTTTTAACGAAGTTTAATTGACAATGAAGTACGGAATGGTTGTTATCACGGCTGGATTTTCAGGCTTACTCAGCTTCAGCCTTCTTGCAGTGGCAATTGGCAGCGACTATTGGTACATCATCGATGTGAACAAGGCGAACCAGTCGGACTTGGAGGACCTGAGTTCGCATTCCGGTCTCTGGAGGATCCGTGAAGGGAAAAATGGCACCTCTTGGCCAATCCAGTCCTTCTTTGTGGATACCTCCAACAAAACTGACATAGAGAAGCACCTTATCAACTCCCACAAGGTCATAGTCACCCTGCTGCCTCTCAGTCTGTTGCTGGTGGTGTTGGGAGGGATCTGtggtctggtcagctctctggcCAGGAATCCCAGCCTGCTGGCCGGCTCCGCATCCTACTTCCTCTTCTGCAGTCTCTTCACCCTCTCCGGGTTGAGTGTTTACGTCAGCTACTGCCAACGGGCTCGGGAACTGTTGGAACCTGAGATTCTGGCCAGCGTCCATGTGTCCTATGGCTGGTCGTTGGGTATGGCCTGTCTCTCCTTCAGCCTGGAAGTGACCGCAGGCCTGCTGCTGATGCTGGCTGCACGTAAGGCCCATCTCATGGGACGTGACCATGGAGTCACCATTATCGCCATGGCCTGAAGAGGGAAAGAGAACGGACTGAAACTGGAAGGGACTTCTGGAAGGGTCCATTCAGAATCAGTCATTTTCATTCTCTGTTGccaaacattttacatttttttctgtTGCGtgtcctaatgaacacgacccctGACTGTGACCACTGATCAAACTCTTCAGTTCATTGCAACTCCAAAAGACTGACTTGTATGTTACATGTTCTAGCTTTCTCCTCTGAGCTACtggtccatattaggacagtctcAGGGGCAAAATAACTTGGCTCCACAATTCATCCCTCTCTGGACACATGGTCTCATTATTGGGGGCAGCAGCTCTATTTTGCTAATTGAACGAAATGTGCAAGGATCCAATCATACACAAGGACACACAAAAAGACACTCTTTCTGGCAACATTACATAGCAATTCACTAGATTTGAATGCTACAAAGGAGCAATGCTTTCGCATCCTCAATGGCTGGAGGGCAACAGTAGTTAATAAGGCTTTGATTACTTAGCTCCTCTATTTCCTCTTTGGTTTACTCAGGGTTCACAGCCCAGAAGCTACTTTCAGCACATTCCATACATTGTCACAATCTACTAATTTATTCATGTTGTGGCTCTTTGCTAATCAATGAGTTGTTGTGAGATGAAGAAAGACACAACGTTAATCACTAGGACATTATTGCTGTAGGGAAGATTGGTTTTGGTTTCTCAGTCCACTTGTCTCTGTGATTGTGTATCGTAATGATAATAGGCATTGTAGAATttaatttggaaaaaaggaaaTGATCCAAGTTTCAAAATGCTTTAAGCTAATAATTGTCTAGTAGACAGATGCCTGCCTTGTACTTGCATCATGGCagtcttgtgtgtgtttgtgttatgttCCAACTCCTTTCAAACCTTGCTACAGTAACATTAAATCATACGGACTATGAGGGCTAA
>TU1363008
ACAATATCAAAACAGAACCCTCTTGACCAGATGTTGCCGAGAATAATTTGACAAGTCAGCACTAGACGGCGGGGAGAAGAATAAAGACCATGTTGGAGAGCTTTGCGCATTTCTCCATCTCGGGTGCCCGGTCCAGAACGTTATGTGATACGGATTTCTTTGTGACCATGACGTTCATTTGAATTGCTCACGGTTTTGTTTTTAACGAAGTTTAATTGACAATGAAGTACGGAATGGTTGTTATCACGGCTGGATTTTCAGGCTTACTCAGCTTCAGCCTTCTTGCAGTGGCAATTGGCAGCGACTATTGGTACATCATCGATGTGAACAAGGCGAACCAGTCGGACTTGGAGGACCTGAGTTCGCATTCCGGTCTCTGGAGGATCCGTGAAGGGAAAAATGGCACCTCTTGGCCAATCCAGTCCTTCTTTGTGGATACCTCCAACAAAACTGACATAGAGAAGCACCTTATCAACTCCCACAAGGTCATAGTCACCCTGCTGCCTCTCAGTCTGTTGCTGGTGGTGTTGGGAGGGATCTGtggtctggtcagctctctggcCAGGAATCCCAGCCTGCTGGCCGGCTCCGCATCCTACTTCCTCTTCTGCAGTCTCTTCACCCTCTCCGGGTTGAGTGTTTACGTCAGCTACTGCCAACGGGCTCGGGAACTGTTGGAACCTGAGATTCTGGCCAGCGTCCATGTGTCCTATGGCTGGTCGTTGGGTATGGCCTG

Function

NR:

description
PREDICTED: transmembrane protein 235-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941853.1 False 1875 mRNA 0.45 4 62899607 62926919
TU1363008 True 736 TUCP 0.50 4 62900643 62926816

Neighbor

gene id symbol gene type direction distance location
LOC110487064 lg3bp coding downstream 387178 62506293 ~ 62512429 (-)
LOC118938345 LOC106595712 coding downstream 400417 62495039 ~ 62499190 (-)
LOC118938346 LOC106606432 coding downstream 425183 62469918 ~ 62474424 (-)
LOC118936370 LOC106595712 coding downstream 439612 62455727 ~ 62459995 (-)
LOC110487076 LOC106606418 coding downstream 470037 62422481 ~ 62429570 (-)
LOC110487151 LOC105012845 coding upstream 10249 62937168 ~ 62957406 (-)
LOC110486089 LOC106606381 coding upstream 105493 63032412 ~ 63218815 (-)
LOC110517310 LOC106601910 coding upstream 380262 63307181 ~ 63309144 (-)
LOC110487088 otop2 coding upstream 429566 63356485 ~ 63361782 (-)
LOC110487424 otop2 coding upstream 442773 63369692 ~ 63399197 (-)
G1194621 NA non-coding downstream 16900 62882495 ~ 62882707 (-)
G1194620 NA non-coding downstream 19258 62879730 ~ 62880349 (-)
G1194616 NA non-coding downstream 24049 62875344 ~ 62875558 (-)
G1194591 NA non-coding downstream 76158 62823238 ~ 62823449 (-)
G1194543 NA non-coding downstream 120874 62690733 ~ 62778733 (-)
G1194671 NA non-coding upstream 3033 62929952 ~ 62931288 (-)
G1194686 NA non-coding upstream 6424 62933343 ~ 62933560 (-)
G1194692 NA non-coding upstream 33432 62960351 ~ 62960595 (-)
G1194875 LOC101476622 non-coding upstream 38930 62965849 ~ 62978839 (-)
G1194895 NA non-coding upstream 66878 62993797 ~ 62994199 (-)
G1194521 NA other downstream 163897 62730954 ~ 62735710 (-)
G1194306 LOC106600182 other downstream 439709 62455904 ~ 62499352 (-)
LOC118938342 LOC106606436 other downstream 725107 62164135 ~ 62174550 (-)
G1194074 NA other downstream 828772 62070109 ~ 62070835 (-)
G1194684 NA other upstream 8867 62935786 ~ 62937073 (-)
G1194933 NA other upstream 210121 63137040 ~ 63137722 (-)
LOC110485277 LOC106602060 other upstream 570179 63495359 ~ 63509387 (-)
G1195624 NA other upstream 1018157 63945076 ~ 63945764 (-)

Expression


Co-expression Network