LOC118938342 (LOC106606436)


Basic Information

Item Value
gene id LOC118938342
gene name LOC106606436
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62164135 ~ 62174550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941819.1
TTTAGCGACTCTCTCAGTCTATTGGTCACTTCGCATGTCATTATCATAGTCGGTTCTTGGTGTGGAAATCATGTTAACGCTGTTACAACTGTAACTCTGTTGAACTATATGTTTGGCGGCAACATTGGAAACGGAAACAATTTATACATTCGTCGCAACACCCCAACAACAGAAACTTCAGAATGAGCGTGGGGTTCATCGGAGCGGGTCAGTTGGCCCATGCCTTGGTGAAGGGATTCAGCGCTGCAGGTGTCATTGCCACACAGAGGATCACTGCCAGCTCCCCAGACACAGATCTTCCCACAGTGTCTGGACTGCGGAAAATGGGTGTCAATCTCACAACCAGCAACAAGGAGGTGGTGAACAAGAGTGACGTTCTGTTTCTGGCTGTCAAACCACACATCATCCCCTTCGTGTTGGATGAGATCGGACCGGACATTGAGGACCGCCACCTCATTGTGTCCTGTGCAGCTGGTGTCACCATCAGCTCCATTGAGAAGAAGCTGCTCCAGTACCGCCCGTTCCCCAAGGTGATGCGATGCATGACCAACACCCCGGTGGTGGTTCGGGAGGGAGCCACGGTCTACGCCACGGGTACCCACGCCGAGCTAGAGGACGGGAGGCTGCTGGAGCAGCTGATGGCCAGTGTGGGCTACTGCACGGAGGTGGAGGAGGACCTGATCGATGCCGTCACCGGACTCAGTGGCAGTGGACCTGCCTATGCATTTACAGCCGTGGAAGCGCTTGCTGATGGGGGGGTGAAAATGGGTCTGCCCAGGAGGCTGGCTATACGGCTTGGAGCACAGGCCCTGCTGGGAGCAGCCAAAATGCTGTTGGACTCGGAGCAGCACCCTGGCCAGCTGAAGGACAACGTTTGCTCCCCAGGGGGCGCCACCATTCACGCCCTGCACGTCATGGAGAGTGGGGGCTTCCGCGCCCTGCTCATCAACGCTGTGGAGGCCTCCTGCATTAGGACCAGGGAGCTCCAGTTCTTGGCTGACCAGGAGAAGATCTCTCCTGCGGCCATCAAGAAGACTACGCTGGACAAGGTTCTGCAGCAGCCAGGGGTGGGAACAGGGGTGGGCGTCCGGACGGGATCTGGGATCAGCCTGTTCAACAGCAGCAACCCCAGGCATAAGAAGTAATTGAACTGAGTGGCTCTGATCACAGAACAGTGGTGAATTCATTAGTGCATTGCAGACCAtatcaaaacattttgcaacaaaaaCAAGTTTCTTAgcggacaagttcaggtagttccTCCCTGTTTGGGTCTTTTTGCTTCCTAGTGATACGCCCCAGGAAGAGACCCTCAAAAGAATGAAATGCCGCTGAACATATTATTTAAACCCTAAAAGAGGTGTTATGGTTATAGCATGCCAGCTGAGAGGAGGGGCATAAATGGCAGCTTCATAAATGTGATGATAAACTTAAAGCAGCAATAGAGGATGTAGGGTGAAGGGACACTTCTCCTGCTCTCCTTCCATGTTCACTGACTAGAAACATCTGGACAGG
>TU1362236
ATGCTGTTGGACTCGGAGCAGCACCCTGGCCAGCTGAAGGACAACGTTTGCTCCCCAGGGGGCGCCACCATTCACGCCCTGCACGTCATGGAGAGTGGGGGCTTCCGCGCCCTGCTCATCAACGCTGTGGAGGCCTCCTGCATTAGGACCAGGGAGCTCCAGTTCTTGGCTGACCAGGAGAAGATCTCTCCTGCGGCCATCAAGAAGACTACGCTGGACAAGGTTCTGCAGCAGCCAGGGGTGGGAACAGGGGTGGGCGTCCGGACGGGATCTGGGATCAGCCTGTTCAACAGCAGCAACCCCAGGCATAAGAAGTAATTGAACTGAGTGGCTCTGATCACAGAACAGTGGTGAATTCATTAGTGCATTGCAGACCAtatcaaaacattttgcaacaaaaaCAAGTTTCTTAgcggacaagttcaggtagttccTCCCTGTTTGGGTCTTTTTGCTTCCTAGTGATACGCCCCAGGAAGAGACCCTCAAAAGAATGAAATGCCGCTGAACATATTATTTAAACCCTAAAAGAGGTGTTATGGTTATAGCATGCCAGCTGAGAGGAGGGGCATAAATGGCAGCTTCATAAATGTGATGATAAACTTAAAGCAGCAATAGAGGATGTAGGGTGAAGGGACACTTCTCCTGCTCTCCTTCCATGTTCACTGACTAGAAACATCTGGACAGGTAAAAGCAAGTTCCTAATAGGCATTATGGCTTTCACCTGTCCAGTGTTGTCatatcagtgcagatgaaggagaaAAGCGGTAGGAGGTGACCGGGGGAAGAAGACGAACATAGACAGTTAAGATGGACCAACATGGTGATGAACAACAGGTCACAATTCCTTTACATTTTAGCCAttaagcagatgctcttatccagagcgacttacaggagcaattatggtcaagtgccttgctcaagggcacgtgaacagatttttcacctagtcggctcgggacTCGAACCAGGTATCTATCGGTTACTGTTGGAACGTTCTTAACctctaggttacctgccgcccactCCCTTTCAGTAGAAACACAGAGACATGTGGAGTTGGATGTCTTATGTGCTCAGCTATCTATAGCTTCTGTTTCATAGAATGTGTGCCTGCCTATATGTTCCGTTAGACAGATTGTTAGGTCATACATTATGTACAGTCTTACTGGAACTATTTTGGTCTGTTGCTAAACGGCAAAGGTCCCTGTTTTCTATTGTTGTTTATCTCTTCATTTTCTCGCTATTTTCTTTGCTTGATTGAGAGATTATATTACAGCTTTAGTATGTTAATCATTTTAGCCTGACTAAGGGAGGGAAAAACATTGTTTTTCAGTTTGTAGAAGGAGCAACACTGTTTACACACACTTGGAAACCACAACAAAATGGGAATTCTATTGAACTTTTCTTTATCCAGGTTTGTCTTGTTGATGTATATCTTCTTTAAAATAGACTTGTCAAAGATGGTAGCAGTCATTAATGTTACAAAAGTTACACACATATAGAAatctatctatactgaacaaaaatataaacggaacatgcaacaatttcaaagatattagagttacagttcatatgaggaaatcattGGATTATGGATTTTaaacgactgggaatacagatatgcatctgtttgaCAAAGATGCCTTAataaaaatgggcctcaggatctcatggTATTTTTGTTTGTTCacattgccatcgataaaatgcaattgtgtttgttgttcgtagtttatgcctacccataccataaccagggtcgccaccatggggcactgttcACAATGATGACATCAGCAAGCCACTCGCCCACATGaagccatacacatggtctgcagttgtgaggcaggttggatgtactgccaaattctctaaaacgacagagaaattaacattaaattctctggcaacagctctggtgcagattcctgcagtcagcataccaatttgCAGCTCTCTCAAACTTAacctctgtggcattgtgttatgtgacaattacatggccttttgtccccagcacaaggtacacctgtataacgatcatgctgtttaatcagcttctctacatgtcacacctgtcaggtggagggattaccttggcaaaggagaaacgctcactaacagtgatgtaaacaaatatttgcacaacatttgagagaaataagcatttttgtgcatatggagcaTTTCTGTGATTTTATTTTTCAGTTCatggaacactttacatgctgcttttatatttctgttcagtgtagatgaatcTCCTTTACAAGATAGACttgctacacacaaacacatctccTTTGTGTGAGAGACTTGTTCAAGATGGTAGCAATCATTGTTACACATACACAGtaggtagactacagtattttACATAAGACATTTTACGTTCAGTCCTTTTACATATTTGACTGGCATATTACTGTTTACAAGGTGGAAGTGGTACTATTAGGCCTATACAAAGTGAAATGCATGAATATGCTGAACCTGTAAGAGTTTATATATTTTGTGAACAAAATATGTAAAGTCTAGCTAGATCTGTTTTATTAAACGTTATTTCCAAAACTTTCATGATTAATTAAATTATTTAAACTATTTTTCTGTAGCCTGTATGCATATATGGGTGATTTTGCAAATACTGGCCTTTTTGTGTCTCAGGGTTAGATTAAGATAAAATgttaatttagattttttttcttcacatcgAGGCTATAACCTAAACTTTTTCTTTCAGctttcaatattttattttattttataaagcaTTTCATGTCTGGAATTCACTGTCTC
>TU1362238
CGGTTCTTGGTGTGGAAATCATGTTAACGCTGTTACAACTGTAACTCTGTTGAACTATATGTTTGGCGGCAACATTGGAAACGGAAACAATTTATACATTCGTCGCAACACCCCAACAACAGAAACTTCAGAATGAGCGTGGGGTTCATCGGAGCGGGTCAGTTGGCCCATGCCTTGGTGAAGGGATTCAGCGCTGCAGGTGTCATTGCCACACAGAGGATCACTGCCAGCTCCCCAGACACAGATCTTCCCACAGTGTCTGGACTGCGGAAAATGGGTGTCAATCTCACAACCAGCAACAAGGAGGTGGTGAACAAGAGTGACGTTCTGTTTCTGGCTGTCAAACCACACATCATCCCCTTCGTGTTGGATGAGATCGGACCGGACATTGAGGACCGCCACCTCATTGTGTCCTGTGCAGCTGGTGTCACCATCAGCTCCATTGAGAAGAAGCTGCTCCAGTACCGCCCGTTCCCCAAGGTGATGCGATGCATGACCAACACCCCGGTGGTGGTTCGGGAGGGAGCCACGGTCTACGCCACGGGTACCCACGCCGAGCTAGAGGACGGGAGGCTGCTGGAGCAGCTGATGGCCAGTGTGGGCTACTGCACGGAGGTGGAGGAGGACCTGATCGATGCCGTCACCGGACTCAGTGGCAGTGGACCTGCCTATGCATTTACAGCCGTGGAAGCGCTTGCTGATGGGGGGGTGAAAATGGGTCTGCCCA
>TU1362237
CGGTTCTTGGTGTGGAAATCATGTTAACGCTGTTACAACTGTAACTCTGTTGAACTATATGTTTGGCGGCAACATTGGAAACGGAAACAATTTATACATTCGTCGCAACACCCCAACAACAGAAACTTCAGAATGAGCGTGGGGTTCATCGGAGCGGGTCAGTTGGCCCATGCCTTGGTGAAGGGATTCAGCGCTGCAGGTGTCATTGCCACACAGAGGATCACTGCCAGCTCCCCAGACACAGATCTTCCCACAGTGTCTGGACTGCGGAAAATGGGTGTCAATCTCACAACCAGCAACAAGGAGGTGGTGAACAAGAGTGACGTTCTGTTTCTGGCTGTCAAACCACACATCATCCCCTTCGTGTTGGATGAGATCGGACCGGACATTGAGGACCGCCACCTCATTGTGTCCTGTGC

Function

NR:

description
PREDICTED: pyrroline-5-carboxylate reductase 1, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941819.1 False 1515 mRNA 0.53 8 62166249 62174550
TU1362236 False 2802 TUCP 0.41 2 62164135 62167726
TU1362238 False 727 TUCP 0.55 6 62168410 62174500
TU1362237 True 419 TUCP 0.51 4 62172286 62174500

Neighbor

gene id symbol gene type direction distance location
LOC110487058 LOC106606437 coding downstream 6155 62118425 ~ 62160094 (-)
LOC110487041 LOC105013038 coding downstream 67985 62067104 ~ 62098264 (-)
LOC110487033 LOC106606440 coding downstream 101456 62030676 ~ 62064793 (-)
LOC110487040 LOC106606439 coding downstream 140690 62019705 ~ 62025559 (-)
LOC110512085 LOC106601929 coding downstream 149544 61946652 ~ 62016705 (-)
LOC110485304 LOC106601897 coding upstream 690 62175239 ~ 62180718 (-)
LOC110487059 notum coding upstream 9456 62184006 ~ 62205304 (-)
LOC110487063 LOC106606447 coding upstream 143101 62317651 ~ 62319367 (-)
LOC110487061 roa2 coding upstream 149481 62324031 ~ 62327032 (-)
LOC110485307 LOC106606399 coding upstream 155683 62330233 ~ 62361587 (-)
G1194105 NA non-coding downstream 4311 62161536 ~ 62161938 (-)
G1194103 NA non-coding downstream 5497 62160443 ~ 62160752 (-)
G1194100 NA non-coding downstream 15313 62150679 ~ 62150936 (-)
G1194098 NA non-coding downstream 22891 62143112 ~ 62143358 (-)
G1194097 NA non-coding downstream 23452 62142556 ~ 62142797 (-)
G1194120 NA non-coding upstream 58872 62233422 ~ 62233925 (-)
G1194121 NA non-coding upstream 61309 62235859 ~ 62236227 (-)
G1194276 NA non-coding upstream 178334 62352884 ~ 62353133 (-)
G1194074 NA other downstream 95414 62070109 ~ 62070835 (-)
G1193568 NA other downstream 580989 61584774 ~ 61585260 (-)
G1193386 NA other downstream 888591 61275745 ~ 61277658 (-)
LOC110538808 LOC106601873 other downstream 1158091 61005929 ~ 61026251 (-)
G1194306 LOC106600182 other upstream 281354 62455904 ~ 62499352 (-)
LOC118938346 LOC106606432 other upstream 295368 62469918 ~ 62474424 (-)
G1194521 NA other upstream 556404 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 726093 62899607 ~ 62926919 (-)
G1194684 NA other upstream 761236 62935786 ~ 62937073 (-)

Expression


Co-expression Network