LOC110487061 (roa2)


Basic Information

Item Value
gene id LOC110487061
gene name roa2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62324031 ~ 62327032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942628.1
ATGGAGCCTCAAAGGAGAGTGTACATATCTCTCCCTAAAAAACACAGGACCGCTTTGGCCAAAAAGTACAAACTGGATCACGGGCTTGTCATTAAGGATCTCAGCACTAACATAAATGAAGGATACCTACAAGCTTACTTCCGACAGTGGGGCAGCATTACAGCATGCACGATCAAGAAAACTCCACAGAACTCTGACTCAAAGAGTGCCAGTGCGTTGGGATACGTGAGTTTTTCCTCTGAGGAGGAGGCAGATACGGCAGACTGGGCGGGTCCTCACTATATAGGAGGCATGGAAGTGGAGGCCAAGAGAGTTGTCAGTCTGAAGATGGATGACCCAGAAGGTTGA

Function

NR:

description
heterogeneous nuclear ribonucleoproteins A2/B1-like

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942628.1 True 348 mRNA 0.48 4 62324031 62327032

Neighbor

gene id symbol gene type direction distance location
LOC110487063 LOC106606447 coding downstream 4664 62317651 ~ 62319367 (-)
LOC110487059 notum coding downstream 118727 62184006 ~ 62205304 (-)
LOC110485304 LOC106601897 coding downstream 143313 62175239 ~ 62180718 (-)
LOC118938342 LOC106606436 coding downstream 149481 62164135 ~ 62174550 (-)
LOC110487058 LOC106606437 coding downstream 163937 62118425 ~ 62160094 (-)
LOC110485307 LOC106606399 coding upstream 3201 62330233 ~ 62361587 (-)
LOC110487076 LOC106606418 coding upstream 95449 62422481 ~ 62429570 (-)
LOC118936370 LOC106595712 coding upstream 128695 62455727 ~ 62459995 (-)
LOC118938346 LOC106606432 coding upstream 143433 62469918 ~ 62474424 (-)
LOC118938345 LOC106595712 coding upstream 168007 62495039 ~ 62499190 (-)
G1194121 NA non-coding downstream 87804 62235859 ~ 62236227 (-)
G1194120 NA non-coding downstream 90106 62233422 ~ 62233925 (-)
G1194105 NA non-coding downstream 162093 62161536 ~ 62161938 (-)
G1194276 NA non-coding upstream 25852 62352884 ~ 62353133 (-)
G1194277 NA non-coding upstream 26326 62353358 ~ 62353557 (-)
G1194284 LOC106606433 non-coding upstream 69993 62397025 ~ 62401603 (-)
G1194306 LOC106600182 non-coding upstream 128872 62455904 ~ 62499352 (-)
G1194334 NA non-coding upstream 200105 62527137 ~ 62527582 (-)
G1194074 NA other downstream 253196 62070109 ~ 62070835 (-)
LOC110512085 LOC106601929 other downstream 307431 61946652 ~ 62016705 (-)
G1193568 NA other downstream 738771 61584774 ~ 61585260 (-)
G1193386 NA other downstream 1046373 61275745 ~ 61277658 (-)
G1194521 NA other upstream 403922 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 573611 62899607 ~ 62926919 (-)
G1194684 NA other upstream 608754 62935786 ~ 62937073 (-)

Expression


Co-expression Network