LOC110487059 (notum)


Basic Information

Item Value
gene id LOC110487059
gene name notum
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62184006 ~ 62205304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941821.1
TCAAACCCTAAACTTGGTTCAATAGCAGTGACAGTGCGGTAGTGGTTTGAGAACAGAACAGTTTTACGGCTTCGATTAAGATCATCTAGGAAACTATTGCTTCTATTTTAGACATTGTTCACATCGACCCATAGAAGCAacttaattgtttttaataaatgcATTTAAAAAGTATTTTCCTTGATCATCTGATACAAAACAGTTAGCCTAGGTCGGAGAATAGCAGTGCAACAGTTCGAACCGTGCGTAATTCTCTGCTTCTTTTTCCAATCCAATCTCCAAACAGCAATAATTCTTCCGAAGGAAAACCTTAAACTCGGAAACCATCAAAGGAAGACCTAAACTGCAGGTGGCTCGCGGAAAAGATGACGGCAATGAGATTGATTTCCTGGCTTTTGCTGCTGGTGTTTATGCAGTCCGGAGTTTTTGCCGCAAGAAGATTCCGAGGTGGTCGCAACCCGCAACCACGACGGACACCGCCTTCTCCCACATACCGGGACCGGGGTGACACCACGGAGAGTTTCCCTTTGGATTTCACCGCCGTCGAAGAGAACATGGACAACTTCATGACGCAGGTGAAGAACCTGGCGCAGTCCCTCTACCCGTGTTCGGCGCAGAAGCTCGACTATGATATGAAGCTGCACTTTTTGGAAAATACTTCAGTCACGTGCAACGATGGAACTCCAGCAGGGTACTACATGAAAGAGTCCAGAGGGAGCAGACGGTGGTTGATATTCTTGGAGGGCGGCTGGTACTGCTTCAACAAAGAGAACTGTGACAGCCGATATGACACCATGAGGAGACTGATGAGCTCGTCCAAGTGGCCTCAAACCAAAACAGGCACAGGGATCCTGTCTCCACTCCCAGAGGAAAACCCTCACTGGTGGAATGCCAACATGGTGTTCATCCCCTACTGCTCTAGTGATGTGTGGAGTGGTGCCTCAGCCAAGACGGACCACAGTGGCTACGCCTTCATGGGGTCTCTGATCATTCAGGAGGTGGTGAAGGATCTGCTGAACAAGGGGCTTGACAACGCCAAGGTTCTACTACTGGCTGGCAGCAGTGCGGGGGGGACGGGGGTCCTGCTGAACGTGGACCCTGTAGCTGAGCTGCTGGAGGGGCTGGGGCACCCTGGGATCCAGGTGAGAGGTCTGGCTGACTCGGGCTGGTTCCTGGACAACAAGCAGTACCGATCTACTGACTGTCACGACACCATCAGCTGTGCCCCCACGGAGGCCATCAAGAGAGGCATCAAGTACTGGGGCAGCGTTGTGCCAGAGAGGTGTAGACAGGTTCACCTGGGGGAGGAGTGGAACTGTTTCTTTGGCTACAGAGTGTTCCCCTCCATAAAGAGCCCAGTGTTTGTGGTCCAGTGGTTGTTCGACGAGGCCCAGCTGACCGTGGACAACATCCATCTGACCGGTCAGCCCGTCCAGGAGGGGCAGTGGCGGTACATCCAGAACCTAGGCATCGAGCTGAGGAACACGCTCAAAGATGTCCCGGCCATGTTTGCTCCAGCTTGCCTCTCACATGAAGTCATCACAAGGAATTACTGGATCGACGTTCAGGTCAAAGGCACCTCCCTTCCCCGAGCCCTGCACTGCTGGGACCGCAGTCTCCAAGACAACAGCCGGAACAACAAGGCCCCGCCCAAGGGCTGCCCCGTCCATTTGATTGACAGCTGCCCCTGGCCACACTGCAACCCCACCTGCCCCACCATCCGGGACCAGTTCACGGGCCAGGAGATGAACGTGATCCAGTTCCTCATGCACATGGGCTTTGACGTGCAGAAGATGGCCCAGCAGCAGGGCATGGACCCCAGCAAGCTACTGGGGATGCTGAGCAGTGGGAGCTAAAGAGACAGGAGTAAAGTCTTAGTACAGTAGACTAAACCAGGGGGCTATGGGGCCAAATCCTAACTTCGAGATCCcagatttttttacattttttttaaatacttgttTTAATCTCCCGTTGACATCAATGTTtgatttaaagggatagttcacttttttttgggggggg

Function

symbol description
notum Enables palmitoleyl hydrolase activity. Involved in negative regulation of Wnt signaling pathway and protein depalmitoleylation. Acts upstream of or within bone development and regulation of bone mineralization. Predicted to be located in endoplasmic reticulum lumen and extracellular region.

NR:

description
palmitoleoyl-protein carboxylesterase notum1a

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0006507 GPI anchor release biological_process

KEGG:

id description
K19882 NOTUM; O-palmitoleoyl-L-serine hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941821.1 True 2025 mRNA 0.52 10 62184006 62205304

Neighbor

gene id symbol gene type direction distance location
LOC110485304 LOC106601897 coding downstream 3288 62175239 ~ 62180718 (-)
LOC118938342 LOC106606436 coding downstream 9456 62164135 ~ 62174550 (-)
LOC110487058 LOC106606437 coding downstream 23912 62118425 ~ 62160094 (-)
LOC110487041 LOC105013038 coding downstream 85742 62067104 ~ 62098264 (-)
LOC110487033 LOC106606440 coding downstream 119213 62030676 ~ 62064793 (-)
LOC110487063 LOC106606447 coding upstream 112347 62317651 ~ 62319367 (-)
LOC110487061 roa2 coding upstream 118727 62324031 ~ 62327032 (-)
LOC110485307 LOC106606399 coding upstream 124929 62330233 ~ 62361587 (-)
LOC110487076 LOC106606418 coding upstream 217177 62422481 ~ 62429570 (-)
LOC118936370 LOC106595712 coding upstream 250423 62455727 ~ 62459995 (-)
G1194105 NA non-coding downstream 22068 62161536 ~ 62161938 (-)
G1194103 NA non-coding downstream 23254 62160443 ~ 62160752 (-)
G1194100 NA non-coding downstream 33070 62150679 ~ 62150936 (-)
G1194098 NA non-coding downstream 40648 62143112 ~ 62143358 (-)
G1194120 NA non-coding upstream 28118 62233422 ~ 62233925 (-)
G1194121 NA non-coding upstream 30555 62235859 ~ 62236227 (-)
G1194276 NA non-coding upstream 147580 62352884 ~ 62353133 (-)
G1194277 NA non-coding upstream 148054 62353358 ~ 62353557 (-)
G1194074 NA other downstream 113171 62070109 ~ 62070835 (-)
LOC110512085 LOC106601929 other downstream 167406 61946652 ~ 62016705 (-)
G1193568 NA other downstream 598746 61584774 ~ 61585260 (-)
G1193386 NA other downstream 906348 61275745 ~ 61277658 (-)
G1194306 LOC106600182 other upstream 250600 62455904 ~ 62499352 (-)
LOC118938346 LOC106606432 other upstream 264614 62469918 ~ 62474424 (-)
G1194521 NA other upstream 525650 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 695339 62899607 ~ 62926919 (-)
G1194684 NA other upstream 730482 62935786 ~ 62937073 (-)

Expression


Co-expression Network