LOC110487063 (LOC106606447)


Basic Information

Item Value
gene id LOC110487063
gene name LOC106606447
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62317651 ~ 62319367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558970.2
GATGCGTTTTACGTAAATAATCACGGACTCGATGCAGCCAATCACTGCTGAGAGCGCGTTGATCGACATAAACTGAAAATGGCGGAAAGCAGCGCGGAAATCACATTCAAAAAGgAGACTGTAAGCAAACTCCTGTCAAGCTTCTTCAAGGACGAGAAAACTAAAGTCGGTGCCGATGCTGTCCTCCTTATGGCAGAGATGCTACATGTGTTTGTTCAAGaagctgcacaaagaacgaTAAAACAGGCTGAGGCAGAGGACTGTGACAGAATGGACATAGAACATTTTGAGAAGATCCTGCCTCAACTGCTGTTGGATTTTTAGTATGACTTCAGGCCAGAAGGTGGAGCCAGAGAGCCATCCAGTCCTCAATTCAGAATTCGAGAGATTTACCAACTCTTGGAGGACAATGGAAGTAAAGAAAAAGGcttctgttttgtttgtaaaCGTAAAGAAGCACTTTATTTACTTCTATTGTCCTCCAAGAGTTTCTGAATCTACTTCTTAATTCATGCACCTtggttggagagagggagggatcccTTCCACCAGTCCTACATTCAGCCCATGTAGGATATTATATTGTAATTAGTCCTTTATTTGAGTTACATTGCACACGGTCTCTAATGAACTCTGTACATTTTGCTCTGTGGTTTTGCCTCCGTTTGTTGTTTGAAATCATTTGAAACCATTGCTAACTAATAAAAGTTGTTGCgtgctttttttatttattacatcAGTCTGCGACAACTATTTTCTTGGGGGAAACATGTATTGTAAACCTAAAAGCACTTTATTGTAATCAGTTGTGTGATAGGAATTCACACCTAGTACTCCAGCAGCATTGGGGGAGGATCTGGTGtttgacaataaaacatatacGGTGA
>XR_005035630.1
GTTGCGCGATGCGTTTTACGTAAATAATCACGGACTCGATGCAGCCAATCACTGCTGAGAGCGCGTTGATCGACATAAACTGAAAATGGCGGAAAGCAGCGCGGAAATCACATTCAAAAAGgAGACTGTAAGCAAACTCCTGTCAAGCTTCTTCAAGGACGAGAAAACTAAAGTCGGTGCCGATGCTGTCCTCCTTATGGCAGAGATGCTACATGTGTTTGTTCAAGaagctgcacaaagaacgaTAAAACAGGCTGAGGCAGAGGACTGTGACAGAATGGACATAGAACATTTTGAGAAGATCCTGCCTCAACTGCTGTTGGATTTTTAGTATGACTTCAGGCCAGAAGGTGGAGCCAGAGAGCCATCCAGTCCTCAATTCAGAATTCAAGAGTTTCTGAATCTACTTCTTAATTCATGCACCTtggttggagagagggagggatcccTTCCACCAGTCCTACATTCAGCCCATGTAGGATATTATATTGTAATTAGTCCTTTATTTGAGTTACATTGCACACGGTCTCTAATGAACTCTGTACATTTTGCTCTGTGGTTTTGCCTCCGTTTGTTGTTTGAAATCATTTGAAACCATTGCTAACTAATAAAAGTTGTTGCgtgctttttttatttattacatcAGTCTGCGACAACTATTTTCTTGGGGGAAACATGTATTGTAAACCTAAAAGCACTTTATTGTAATCAGTTGTGTGATAGGAATTCACACCTAGTACTCCAGCAGCATTGGGGGAGGATCTGGTGtttgacaataaaacatatacGGTGA
>TU1362484
AAACTGAAAATGGCGGAAAGCAGCGCGGAAATCACATTCAAAAAGgAGACTGTAAGCAAACTCCTGTCAAGCTTCTTCAAGGACGAGAAAACTAAAGTCGGTGCCGATGCTGTCCTCCTTATGGCAGAGATGCTACATGTGTTTGTTCAAGaagctgcacaaagaacgaTAAAACAGGCTGAGGCAGAGGACTGTGACAGAATGGACATAGAACATTTTGAGAAGATCCTGCCTCAACTGCTGTTGGATTTTTAGTATGACTTCAGGCCAGAAGGTGGAGCCAGAGAGCCATCCAGTCCTCAATTCAGAATTCGAGAGATTTACCAACTCTTGGAGGACAATGGAAGTAAAGAAAAAGGcttctgttttgtttgtaaaCGTAAAGAAGCACTTTATTTACTTCTATTGTCCTCCAAGAGTTTCTGAATCTACTTCTTAATTCATGCACCTtggttggagagagggagggatcccTTCCACCAGTCCTACATTCAGCCCATGTAGGATATTATATTGTAATTAGTCCTTTATTTGAGTTACATTGCACACGGTCTCTAATGAACTCTGTACATTTTGCTCTGTGGTTTTGCCTCCGTTTGTTGTTTGAAATCATTTGAAACCATTGCTAACTAATAAAAGTTGTTGCgtg

Function

NR:

description
centromere protein X-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558970.2 False 887 mRNA 0.41 5 62317651 62319360
XR_005035630.1 False 793 mRNA 0.42 6 62317651 62319367
TU1362484 True 649 lncRNA 0.41 5 62317820 62319291

Neighbor

gene id symbol gene type direction distance location
LOC110487059 notum coding downstream 112347 62184006 ~ 62205304 (-)
LOC110485304 LOC106601897 coding downstream 136933 62175239 ~ 62180718 (-)
LOC118938342 LOC106606436 coding downstream 143101 62164135 ~ 62174550 (-)
LOC110487058 LOC106606437 coding downstream 157557 62118425 ~ 62160094 (-)
LOC110487041 LOC105013038 coding downstream 219387 62067104 ~ 62098264 (-)
LOC110487061 roa2 coding upstream 4664 62324031 ~ 62327032 (-)
LOC110485307 LOC106606399 coding upstream 10866 62330233 ~ 62361587 (-)
LOC110487076 LOC106606418 coding upstream 103114 62422481 ~ 62429570 (-)
LOC118936370 LOC106595712 coding upstream 136360 62455727 ~ 62459995 (-)
LOC118938346 LOC106606432 coding upstream 151098 62469918 ~ 62474424 (-)
G1194121 NA non-coding downstream 81424 62235859 ~ 62236227 (-)
G1194120 NA non-coding downstream 83726 62233422 ~ 62233925 (-)
G1194105 NA non-coding downstream 155713 62161536 ~ 62161938 (-)
G1194103 NA non-coding downstream 156899 62160443 ~ 62160752 (-)
G1194276 NA non-coding upstream 33517 62352884 ~ 62353133 (-)
G1194277 NA non-coding upstream 33991 62353358 ~ 62353557 (-)
G1194284 LOC106606433 non-coding upstream 77658 62397025 ~ 62401603 (-)
G1194306 LOC106600182 non-coding upstream 136537 62455904 ~ 62499352 (-)
G1194334 NA non-coding upstream 207770 62527137 ~ 62527582 (-)
G1194074 NA other downstream 246816 62070109 ~ 62070835 (-)
LOC110512085 LOC106601929 other downstream 301051 61946652 ~ 62016705 (-)
G1193568 NA other downstream 732391 61584774 ~ 61585260 (-)
G1193386 NA other downstream 1039993 61275745 ~ 61277658 (-)
G1194521 NA other upstream 411587 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 581276 62899607 ~ 62926919 (-)
G1194684 NA other upstream 616419 62935786 ~ 62937073 (-)

Expression


Co-expression Network