LOC110485307 (LOC106606399)


Basic Information

Item Value
gene id LOC110485307
gene name LOC106606399
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62330233 ~ 62361587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941824.1
CAGAGAGCGGGCAGATGAGAGGAGTGAGGAATCCATACAGACCAACCTTCTGGCCCGGAAGAGCTGGTCTACCGCCACCCTGAGGGTCCTGTCCTCCATGCCCAGTCGCAGCATCGGAAATGGTCTCTCCTCACTCAGGGCAGCAGAGTCGTCTTGAAATCATCTCCCAGTGCAACATCCGTTCTACTCAGCTGCGCAGGTACCACCGCCAGACCCAAGACGTTTCCCTCTCCTCCAGACCTAGTATCCGTGGCTATGGGATCGAGGCAGACTCTGAGGATGTCTGTGAGGAAGAGACCAAGAGACAGGAGCTGGTCAACAATCTTCAGAGTCTGTCGGCCGGTGACCGTGTGCGTATGCTGCGTGCCACGCCCCTTAGTCTGGCTGAGAAGACTAAACTGAGGAAACTTGTATTCAGTGACAAAGTTGGACAGTCCCTCTTGAGCAGCCAGGTTCCCTGCTGTAGCCTCCTTAAGCGAGCTTTGTATCACATCTGGTTCGGATGTCTCTTCATCCTCAGTTCCCTGCAGTTGTGGCAGGTGGCTTTGAAGAGGCTGGGTGGCCGCTTTGGCACTGGTGTGCTCTCCTACTTTCTCTTCATCAGGACTCTTCTGCTCTTCaacgtctttctcttcctcatcaACGGCCTGTTCCTGGTCCTCCCCCAGGCCATCCACCCGCCCCTTCACACCCCCAGCTCCCACAGAGTCACAGGCCTGGAGCTGTTCACCGGCACGGGTTATCTCTCGAACTCTCTAATGTTTTATGGCTACTACACCAACTCCACCATCAACACCAGTTGTAGACCTGATAAAGCCACCGCCGGGACTGGCTGCGGCACCACCAGTGACCCTCACATGATGGCCTACAACATTCCCTTAGCCTACTGCTTCACCATCGGCATAACATTCTTTATCACCGGCATCGTCCTTGTTTACAGCATGTCCAAGTCCTTTGAGAGGAGTTTCCGTGTGTTCAAGTCTCAGGGAAACATGGCCATAAAGGTCTTCTGCTCCTGGGATTTCAAAGTCAGCAAGAAGATGTCTGTCAGGCTGCAGTCGGAGAACATCACCACCCAGCTCAAGGAGCTGTTGTCGGAGGTGAAAggcggagaggaggagaagggcagGCTGTCTGGGATGGCGGTGCACCTGCTAGCATGGAGCATTTCTCTGGGGAGCACCTTCTTCTGTGCACTCGGCATCCACTGCTTTGCCAAGTACATGCACCtgAGGAGACTTGAGCATGCAGAGGGGGAGGTCAGTGTGGTGCATGAGGCTCGTCTGCTGGCTCTGCCTGGGGTTGTGTCCTGTGGGAACCTCCTCCTCCCTGGTCTCTTCAACCTCGTGTCTTGGATGGAGAACTTCAACTCGCCCATTGTACGTCTCTATGTTTCCATCTTCAGGAACCTACTGCTGAAGGTGAGCATTCTTGGCGTACTGTGCTACCATTGGCTGGGGAAAATTGCAGCTGAACCAGAGCAACATGGTCTGCAGTGCTGGGAGAGCTTTGTTGGTCAGGAGCTGTATCGTTTCCTGCTCGTGGATTTCATATTCACGGTTCTCTACACAGTCTTCGGAGAATTTATTTGGAAGCGGTTTTCTCAAGGAGtgctgaggagaaggaggaagccAGTGTTTGATATCGCCCGTAACGTACTCGAGCTCATCTATGGGCAAACCCTCACCTGGCTAGGCTTGCTCTTCACTCCTTTACTGCCAGCTGTGCAGATCCTcaagctgttgttgttgttccataTGAAAAAGAGCAGTCTACTGGTGAACTGCCAGGCATCCAGGAAGCCGTGGAGAGCCAGTCAGATGAGcaccctcttcatctctctgctGTGTTTCCCCTCTTTCCTCGGGGCCACCGTGTCTGTGACCTACACCATATGGACGATTAAGCCCTCCTCTGGCTGTGGTCCTTTCAGGAACCTCCCCTTCATGTTCCACTCGGGCAAACAGTGGGCCCAGGAGCTGAAGAGTACCAACCACAAGCTGGCCTGGCTCAACTGGGTACACAGCTGCTTGGTGGAGAACCCcctcttcctgttcctgttgGCAGGTGTCTTTCTAATGGTCATTTACATTCACACCCAAGTTTTAGACGGCCAAAGGAAAATAATTAGTCTGCTACAGGAGcaaatagaaaatGAGGGGAAGGACAAGAAGTtcttaattactagtctgcaggcCATCCATGAGAAGAGGCAGTATCCACTGTCCCCTTCCTCCAGGCCTCAGCCACAGGGCAGTGAGgttgaatatgttttagtggaaGATTAAATTATTCCAGAGTATTCATTGGATGCTGCATGTTACATTTTGGACTCCCATCACATCAAGGATATTTGTCTGCTATCAACCAGTCAAAGTGAACTCAAAGTGGAGTGATGTGTGTGGTGAAGGACATTGAGACATTTCTTGTAGAATGTAACTATGACTGATGTGTGTTCAAGACTATCAGAATGTAAAGTAACTGAGACTGATATGTATTCTAGACCATCAGAATGTAAAGTAACTGAGACTGATATGTATTCTAGACCATCAGAATGTGAAGTAACTGAGACTGATAAATATTCAAGATCATCCGAGGTGTGTTTTATACTAGTATGGTATTTCCAATGTGGGCCATAACTGTCTAATTTGCCTTttgttaatatatatttttaaatata
>XM_036941822.1
GATCCAAGAGGGAGCTTAAAGGGGCAGGTAAGTCcatgatacagacagacaggtgtggcCACGCAGAGTGAAGACCAGGAGGATGGCATACAGTGTGGACTTCAATCTGAGACCTATAATGGAGCTTGAATTGGAGAGTCTTAGGGGTGATGATACGGCCCAGGACTCTATGACGGGAGCAGGTCTGGAGAGTGGCAGTCCTGAAACCCTGGAAATGGAGGTCCTTACAACGGAAGGCAGAGATAGGCTGGCCAGCCAGATGAGTGATGTCAGAGAGCGGGCAGATGAGAGGAGTGAGGAATCCATACAGACCAACCTTCTGGCCCGGAAGAGCTGGTCTACCGCCACCCTGAGGGTCCTGTCCTCCATGCCCAGTCGCAGCATCGGGCAGCAGAGTCGTCTTGAAATCATCTCCCAGTGCAACATCCGTTCTACTCAGCTGCGCAGGTACCACCGCCAGACCCAAGACGTTTCCCTCTCCTCCAGACCTAGTATCCGTGGCTATGGGATCGAGGCAGACTCTGAGGATGTCTGTGAGGAAGAGACCAAGAGACAGGAGCTGGTCAACAATCTTCAGAGTCTGTCGGCCGGTGACCGTGTGCGTATGCTGCGTGCCACGCCCCTTAGTCTGGCTGAGAAGACTAAACTGAGGAAACTTGTATTCAGTGACAAAGTTGGACAGTCCCTCTTGAGCAGCCAGGTTCCCTGCTGTAGCCTCCTTAAGCGAGCTTTGTATCACATCTGGTTCGGATGTCTCTTCATCCTCAGTTCCCTGCAGTTGTGGCAGGTGGCTTTGAAGAGGCTGGGTGGCCGCTTTGGCACTGGTGTGCTCTCCTACTTTCTCTTCATCAGGACTCTTCTGCTCTTCaacgtctttctcttcctcatcaACGGCCTGTTCCTGGTCCTCCCCCAGGCCATCCACCCGCCCCTTCACACCCCCAGCTCCCACAGAGTCACAGGCCTGGAGCTGTTCACCGGCACGGGTTATCTCTCGAACTCTCTAATGTTTTATGGCTACTACACCAACTCCACCATCAACACCAGTTGTAGACCTGATAAAGCCACCGCCGGGACTGGCTGCGGCACCACCAGTGACCCTCACATGATGGCCTACAACATTCCCTTAGCCTACTGCTTCACCATCGGCATAACATTCTTTATCACCGGCATCGTCCTTGTTTACAGCATGTCCAAGTCCTTTGAGAGGAGTTTCCGTGTGTTCAAGTCTCAGGGAAACATGGCCATAAAGGTCTTCTGCTCCTGGGATTTCAAAGTCAGCAAGAAGATGTCTGTCAGGCTGCAGTCGGAGAACATCACCACCCAGCTCAAGGAGCTGTTGTCGGAGGTGAAAggcggagaggaggagaagggcagGCTGTCTGGGATGGCGGTGCACCTGCTAGCATGGAGCATTTCTCTGGGGAGCACCTTCTTCTGTGCACTCGGCATCCACTGCTTTGCCAAGTACATGCACCtgAGGAGACTTGAGCATGCAGAGGGGGAGGTCAGTGTGGTGCATGAGGCTCGTCTGCTGGCTCTGCCTGGGGTTGTGTCCTGTGGGAACCTCCTCCTCCCTGGTCTCTTCAACCTCGTGTCTTGGATGGAGAACTTCAACTCGCCCATTGTACGTCTCTATGTTTCCATCTTCAGGAACCTACTGCTGAAGGTGAGCATTCTTGGCGTACTGTGCTACCATTGGCTGGGGAAAATTGCAGCTGAACCAGAGCAACATGGTCTGCAGTGCTGGGAGAGCTTTGTTGGTCAGGAGCTGTATCGTTTCCTGCTCGTGGATTTCATATTCACGGTTCTCTACACAGTCTTCGGAGAATTTATTTGGAAGCGGTTTTCTCAAGGAGtgctgaggagaaggaggaagccAGTGTTTGATATCGCCCGTAACGTACTCGAGCTCATCTATGGGCAAACCCTCACCTGGCTAGGCTTGCTCTTCACTCCTTTACTGCCAGCTGTGCAGATCCTcaagctgttgttgttgttccataTGAAAAAGAGCAGTCTACTGGTGAACTGCCAGGCATCCAGGAAGCCGTGGAGAGCCAGTCAGATGAGcaccctcttcatctctctgctGTGTTTCCCCTCTTTCCTCGGGGCCACCGTGTCTGTGACCTACACCATATGGACGATTAAGCCCTCCTCTGGCTGTGGTCCTTTCAGGAACCTCCCCTTCATGTTCCACTCGGGCAAACAGTGGGCCCAGGAGCTGAAGAGTACCAACCACAAGCTGGCCTGGCTCAACTGGGTACACAGCTGCTTGGTGGAGAACCCcctcttcctgttcctgttgGCAGGTGTCTTTCTAATGGTCATTTACATTCACACCCAAGTTTTAGACGGCCAAAGGAAAATAATTAGTCTGCTACAGGAGcaaatagaaaatGAGGGGAAGGACAAGAAGTtcttaattactagtctgcaggcCATCCATGAGAAGAGGCAGTATCCACTGTCCCCTTCCTCCAGGCCTCAGCCACAGGGCAGTGAGgttgaatatgttttagtggaaGATTAAATTATTCCAGAGTATTCATTGGATGCTGCATGTTACATTTTGGACTCCCATCACATCAAGGATATTTGTCTGCTATCAACCAGTCAAAGTGAACTCAAAGTGGAGTGATGTGTGTGGTGAAGGACATTGAGACATTTCTTGTAGAATGTAACTATGACTGATGTGTGTTCAAGACTATCAGAATGTAAAGTAACTGAGACTGATATGTATTCTAGACCATCAGAATGTAAAGTAACTGAGACTGATATGTATTCTAGACCATCAGAATGTGAAGTAACTGAGACTGATAAATATTCAAGATCATCCGAGGTGTGTTTTATACTAGTATGGTATTTCCAATGTGGGCCATAACTGTCTAATTTGCCTTttgttaatatatatttttaaatata

Function

NR:

description
PREDICTED: transmembrane channel-like protein 6 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941824.1 False 2680 mRNA 0.50 18 62330233 62357802
XM_036941822.1 True 2928 mRNA 0.51 21 62330233 62361587

Neighbor

gene id symbol gene type direction distance location
LOC110487061 roa2 coding downstream 3201 62324031 ~ 62327032 (-)
LOC110487063 LOC106606447 coding downstream 10866 62317651 ~ 62319367 (-)
LOC110487059 notum coding downstream 124929 62184006 ~ 62205304 (-)
LOC110485304 LOC106601897 coding downstream 149515 62175239 ~ 62180718 (-)
LOC118938342 LOC106606436 coding downstream 155683 62164135 ~ 62174550 (-)
LOC110487076 LOC106606418 coding upstream 60894 62422481 ~ 62429570 (-)
LOC118936370 LOC106595712 coding upstream 94140 62455727 ~ 62459995 (-)
LOC118938346 LOC106606432 coding upstream 108878 62469918 ~ 62474424 (-)
LOC118938345 LOC106595712 coding upstream 133452 62495039 ~ 62499190 (-)
LOC110487064 lg3bp coding upstream 144706 62506293 ~ 62512429 (-)
G1194121 NA non-coding downstream 94006 62235859 ~ 62236227 (-)
G1194120 NA non-coding downstream 96308 62233422 ~ 62233925 (-)
G1194105 NA non-coding downstream 168295 62161536 ~ 62161938 (-)
G1194284 LOC106606433 non-coding upstream 35438 62397025 ~ 62401603 (-)
G1194306 LOC106600182 non-coding upstream 94317 62455904 ~ 62499352 (-)
G1194334 NA non-coding upstream 165550 62527137 ~ 62527582 (-)
G1194264 NA non-coding upstream 203160 62564747 ~ 62567053 (-)
G1194367 LOC106601941 non-coding upstream 208358 62569945 ~ 62580456 (-)
G1194074 NA other downstream 259398 62070109 ~ 62070835 (-)
LOC110512085 LOC106601929 other downstream 313633 61946652 ~ 62016705 (-)
G1193568 NA other downstream 744973 61584774 ~ 61585260 (-)
G1193386 NA other downstream 1052575 61275745 ~ 61277658 (-)
G1194521 NA other upstream 369367 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 539056 62899607 ~ 62926919 (-)
G1194684 NA other upstream 574199 62935786 ~ 62937073 (-)

Expression


Co-expression Network