LOC110485304 (LOC106601897)


Basic Information

Item Value
gene id LOC110485304
gene name LOC106601897
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62175239 ~ 62180718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941820.1
aaagagggagggaggtagagagagaaatagcgtgtgagagagagacagagaagaagagagggagaaagagggacacGAGACAGAGATCAGACAGTGAGGCGGACTTTTCCAGGGAGCTTAGGTCCTGGCAGTGGAAGGATTACAAATACAGAGCTGATCAGTATTGGACCTTGACAAGCCTAGTACAGCTGCCCGCATGGGACACAGGACTACAACCAGAACAACAACCTAACCCCCCCGTTCTATAATGGGTTATTATCGGAGCACTCCCCCATGTTCATGTAACTGTACTGCGTTTGAATGAGCCTGTTGATGGATTGTTGGGCTCTGGATCTCTGGAGTGACATGTTGGGAGCGAGGATCTTGTTGTGCTTCCATAACCTGAAGGAGAAGTGAATGACAAGACCCTTTGTGACTGAGTTGGACTTTTCAGTTAAAACACAAGGGTAATGTTATATCTGGCCACCGTCAATCTCGATATGTGATTATTGATACAAGCATCTGTAAGAAACTAGACAGATCACTTTCTTCAACATTAAATTATTACCGTTAGAGAAGCAAAGAAGTTACAAGATTTTATGTTATTTGAGAATCCAAAATTGCTAAACTGTTGACAGGGAAGATGAAATCAGCACTACTCAGGGCTCTGACTGCGTTGTAAGTTGAACACCATTGTGGCCGACTGTAACCTGATCTCCAACACACTGCAGTAATTACAAGGTGCATGCAGGGAAACATAGAGAGAGATTTGTAATTAGACCGGTCTATAAAAAGAGCCAGGCAAAGGGCGAGGtccccacacagagagagagaaagggggagagtcAGGCCAAGGACACCCAacttgaagggagggaggggggctgtCTGGAGGCATAGGAAGGAGGCTGCCTGGGGGCATAGGAAGGAGACCAACTGGAGGCATAGGAAGGAGGCCAACTGGAGGCATAGGAAGGAGACCAACTGGAGGCATATGAAGGAGACCAACTGGAGGCATAGGAAGGAGACCAACTAGAATCATAGGAAGGAGGCCAACTGGAGGCATAGGAAGGAGACCAACTGGAGGCATAGGAAGGAGACCAACTGGAGGCATAGGAAGGAGACCAACTGGAGGCATAGGAAGGACACCAACTGGAGGCTTAGGAAGGAGGCTGTCTGGAGGCATAGGAAGGAGGCTGCCTGGAGGCATAGGAAGGAGACCAACTAGAATCATAGGAAGGAGGCTGCCTGGAGGCATAGGAAGGAGACCAACTGGAATCATAGGAAGGAGACCAACTGGAGGCATAGGAAGGAGACCAACTGGAGGCATAGGAAGGAGACTGCCTGAGGGCAAAGGAAAGAGGCTGCCTGGGGGCATTGTTGAGTGTAAGTGACACCCAGACGCCCAAGGGCAACGACACCTAACCTGAAGGGAAGGAGGCTGCCTGGAGTCACCATTGGGAAGAAGATACACCCAGACAGCTTTTGGCAATTAGGGGACAGGAGGTGTGACCATGGACCCCCAAGGCGGACACTACCTGAACAAGGCGGCGGTGCTGTCTCCTCTAGGAGCGGCCCGTATGCTCCAGCTCCTCCTGGGCTGCACCATCATAGCCCTGGTGGCCCACAGCGCCGGATACAACCACGCCTATGGTATCTACTGCATGTTTGTGTGGTGCTTCTGCTTCGCCATGACCCTGCTGGTGTTCACCATGGATGTGACACGCCTCCCCTGCTGCATGCCCATTTCCTGGGACAACCTCACTGTGGCGTTCGCCATGCTCGCCACACTCATGTATGTCGCCGCCTCCGTCGTCTACCCCGTCTACTTCCTGCGCTCTCAGTGCTCCAAGTCGGACGGGGGCTGCGAGGTGCGCAACTACCGCATCGCTGTCACCGTGTGCTCCAGTTTCTGCTGCTTCGCCTACGCGGCTGAGGTGTTCCTGACCCGGGCCAAACCCGGCCATGTGGTGGGCTACATGGCCACCATGTCAGGCCTGCTCAAGGTGGTCCAGGCCTTCGTGGCCTGCATTATATTCGGGGCCCTGGCCAACGGCAGCGAGTACAACCGCCACATCCCCACTCATTACTGCGTGGTGGTCTACAGCCTGTGCTTCTCCATCACCGTGGTCGTGATCGCTGTGACCGTGTCGGGAAAAGCCTCGGCTCTGCCCCTGCGTTTCCCCTTCGACCGCTTCGTGATCATCTACACGTTCCTGGCGACGCTGCTGTACCTGAGCGCCGCCCTGGTGTGGCCCATCTTTAGCTTCGACAGGAAGTATGGCACGCCGGGTCGCCCCAACGGCTGTCCCTGGGAGAACTGTCCCTGGGACAGCAAGCTGGTGGTGGCGGTGTTCACGCATGTCAACATGGTGCTGTACTTCAGCGACCTAATCTACTCCCAGAGGATCCGCTTTGTCTCCCACTCTGCTGCTTGAGGACCCCTCCACCCTGCACTCTGCTGCCTGAGGACCCCTCCACCCTGCACTCTGCTGCCTGAGGACCCCTCAACCCTGCACTCTGCTGCCTGAggacccctccaccctcctcactcCACTCCGCTGCTTGAGgacccctccaccctccactctgCTGCCTGAggacccctccaccctcctcactcCACGCTGATGCCTGAGGACCCCTCCTCACTCCTGGGGACCCCTCTATCCTCCTCAGTCCTGGGGACCCCTCTACCCTCCTCAGTCCTGGGGACCCCTCTACCCTCCTCACTCCTGGGGTGAATCTCAAAAGTTTTTTCCTCAATTCCTCATTGGACACGGCGTACGAGGTAAGGGAGGAGAGCATTGGAGAAGACAAGAGGCGATACGACTTCTGCCTCGCTCTGACGTTGTGAGGAGGCGTGGAGAGGGGATACGAGGAATAGAGACTTTTGAGTTGCACCCCTGgccctcagagacagacagagaccacacTGGAAATGACACACAGCATCTTCACTCAAGTGCCTCTGAATGCCCCATGCCTACTACAGATTACATATCGCCtcaatgatgttatggctttGTGCCTTGATGTGTCTTTCTTAACATCATTGTTATGTCTTTcttaacatcagtgttgtgtctttcttaacatcagtgttgtgtctttcttaacatcagtgttatgtctttcttaacatcagtgttgtgtctttcttaacatcagtgttatgtctttcttaacatcagtgttgtgtctttcTGAACATCAGTGTTGTCATTCTTAACATCAGTGGTATGTCTTTcttaacatcagtgttgtgtcttaacatcagtgttgtctttctgaacatcagtgttgtgtcttaACATCAGTGTTGTCTTTCTTAATATCAGTGTTATGTCTTTCTGAACATCAGTGTTATGTCTTTCTTAACATCAGTGTTGTCTTTCTTAATATCAGTGTTATGTCTTTCTTAACATCAGTGTTATGTCTTTCTTAACATCAGTGTTATGTCTTTCTTAACATCAGTGTTGTCTTTCTTAATATCAGTGTTATGTCTTTCTTAACATCAGTGCTGTGTCTTAACATCAGTGTTGTCTTTCTGAACATCAGTGCTGTGTcttaacatcagtgttgtgtcttaACATCAGTGTTGCCTTTCTgaacatcagtattgtgtcttaacatcagtgttgtgtcttaACATCAGTGTTGCCTTTCTGAACATCAGTGATGTGTcttaacatcagtgttgtgtctttcttaacatcagtattgtgtcttaacatcagtgttgtctttcttaacatcagtgttgtgtcttaACATCAGTGTTGCCTTTCTgaacatcagtgttgtgtcttaACATCAGTGTTGTCTTTCTTAATATCAGTGTTATGTCTTTCTGAACATCAGTGCTGTGTCTTAACATCAGTGTTGTCTTTCTTAACATCAGTGTTATGTCTTTCTTAACATCAGTGTTATGTCTTTCTTAACATCAGTGTTGTCTTTCTTAATATCAGTGTTATGTCTTTCTTAACATAAGTGCTGTGTCTTAACATCAGTGTTGTCTTTCTGAACATCAGTGCTGTGTcttaacatcagtgttgtgtcttaacatcagtgttgtgtcttaACATCAGTGTTGCCTTTCTGAACATCAGTGCTGTGTcttaacatcagtgttgtgtctttcttaacatcagtattgtgtcttaacatcagtgttgtctttcttaacatcagtgttgtgtcttaACATCAGTGTTGCCTTTCTGAACATCAGTGCTGTGTcttaacatcagtgttgtgtctttcttaacatcagtattgtgtcttaACATCAGTGTTGTCTTTCTTAACATCAGTGCTGTGTCTTAACATCAGTGTTGTCTTTCTTAACATCAGTGCTGTGTCTTAACATCAGTGTTGTCTTTCTTAACATCAGTGTTGCCTTTCTGAACATCAGTGCTGTGTCTTTCTTAACATCAGTGTTATATTTCTTAACATCAGTGTTACATCTTAACATTAGTGTTGTGTCTTAACATTAGGGTTATGTcttaacatcagtgttgtgtcttaACATCAGTGTATTTCTTAACACtattatcagtagtatcagtattatAATCTCTAAGAGAAACCTGAGACAAGGGCCAGCACTGTTGTAGGCACTCTGTCTAATGGTGCAGTACATTGGTTTAATTCAGAGCTTTGAACGTGTTGGGCGACATTTTCGTAGTGCAAAAGGGATGTGCTAAATGCGAAAGAACTCTGTAAACCTCATAATCTGGCAGTGTGATTTAAACTGAAACTTTTCCTCTACAATTTGTGTTATAAAGAAGCTATTATTTAAAAGGTTTAGTAAACCGAGCAATCAATAAAATGTAGTCGCCTACTAATAATGCACATTGCTGAAAAACATTTTGAAGATTATACCGAGGTTCATGGTCATTTCTGTACTTTGCTTTTGTTCTATGAACATGTCGGCCATTATGTGTTGGAGGACGTCGTAAATCATCACTGGGTTGTTTTCATGCCTTGAAATAGTCTGTTTCATTTATTGTGTTTCAAGAAACTTTTATCTTAACTaagatgtttttttaaataatgacaataatatataaaaaaatgtaatgtgtagtgtgttgAATTGGCTTTCCATCATTGAGTACTTTTGGTGTTTATACTAACACCCAACTGCATGTTTCAACTTCAGCTCCTCTTGTTTTAGTCCAAGTTCAGTCAGTGTGTAGATTCATTATGAGCTGAATGTTCAGTGTATCAACTGTCAATACGAAattggtaatatatagtatgagtgagtgtgagtgtgtgtgagtgtgtaagggGAGGTTATGGAATTGACTGCATAGATACAGCTACCACTATTTGATATGTGATGTCTGCACTGCAAAACATCCCTGAACACTGTATTGTAATGACAACCATGCAATGTTCTCAATGATTTAAACCGATAGAAAAGTTCTGAAACTTGTGAACATTcaaaatgtcattaaaatgaacAGATTGTTTAGTCTGTGCACctgtt
>TU1362294
TGTATCAACTGTCAATACGAAattggtaatatatagtatgagtgagtgtgagtgtgtgtgagtgtgtaagggGAGGTTATGGAATTGACTGCATAGATACAGCTACCACTATTTGATATGTGATGTCTGCACTGCAAAACATCCCTGAACACTGTATTGTAATGACAACCATGCAATGTTCTCAATGATTTAAACCGATAGAAAAGTTCTGAAACTTGTGAACATTcaaaatgtcattaaaatgaacAGATTGTTTAGTCTGTGCACctgttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941820.1 False 5479 mRNA 0.46 1 62175240 62180718
TU1362294 True 273 lncRNA 0.36 1 62175239 62175511

Neighbor

gene id symbol gene type direction distance location
LOC118938342 LOC106606436 coding downstream 690 62164135 ~ 62174550 (-)
LOC110487058 LOC106606437 coding downstream 15146 62118425 ~ 62160094 (-)
LOC110487041 LOC105013038 coding downstream 76976 62067104 ~ 62098264 (-)
LOC110487033 LOC106606440 coding downstream 110447 62030676 ~ 62064793 (-)
LOC110487040 LOC106606439 coding downstream 149681 62019705 ~ 62025559 (-)
LOC110487059 notum coding upstream 3288 62184006 ~ 62205304 (-)
LOC110487063 LOC106606447 coding upstream 136933 62317651 ~ 62319367 (-)
LOC110487061 roa2 coding upstream 143313 62324031 ~ 62327032 (-)
LOC110485307 LOC106606399 coding upstream 149515 62330233 ~ 62361587 (-)
LOC110487076 LOC106606418 coding upstream 241763 62422481 ~ 62429570 (-)
G1194105 NA non-coding downstream 13302 62161536 ~ 62161938 (-)
G1194103 NA non-coding downstream 14488 62160443 ~ 62160752 (-)
G1194100 NA non-coding downstream 24304 62150679 ~ 62150936 (-)
G1194098 NA non-coding downstream 31882 62143112 ~ 62143358 (-)
G1194097 NA non-coding downstream 32443 62142556 ~ 62142797 (-)
G1194120 NA non-coding upstream 52704 62233422 ~ 62233925 (-)
G1194121 NA non-coding upstream 55141 62235859 ~ 62236227 (-)
G1194276 NA non-coding upstream 172166 62352884 ~ 62353133 (-)
G1194277 NA non-coding upstream 172640 62353358 ~ 62353557 (-)
G1194074 NA other downstream 104405 62070109 ~ 62070835 (-)
LOC110512085 LOC106601929 other downstream 158640 61946652 ~ 62016705 (-)
G1193568 NA other downstream 589980 61584774 ~ 61585260 (-)
G1193386 NA other downstream 897582 61275745 ~ 61277658 (-)
G1194306 LOC106600182 other upstream 275186 62455904 ~ 62499352 (-)
LOC118938346 LOC106606432 other upstream 289200 62469918 ~ 62474424 (-)
G1194521 NA other upstream 550236 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 719925 62899607 ~ 62926919 (-)
G1194684 NA other upstream 755068 62935786 ~ 62937073 (-)

Expression


Co-expression Network