LOC110487040 (LOC106606439)


Basic Information

Item Value
gene id LOC110487040
gene name LOC106606439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62019705 ~ 62025559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941811.1
AGATGGCCCTAGGAATACCTCAGTCTCAGTCTGGCCGTCGTCTGAAGTTTTGGAGGGTAGTGATGTTACTTTGACCTGCAGCAGCAATGCTAACCCAACATTGAACTACACTTGGTTTAAAATAGATGGAGGCAGTTGTCTGGAAATGGTATATCAGGCTGAGCTACAGTTTAATGTTACTCTCACTGGTAATAGTGGGAAATACTTCTGTGTCGTCAGCAATAAGCATGGAAGACAGAATTCCACTATTCTATCACTGAAAGTCAAAGATCATGCAAAGGGGATGGTAGCTGTGACACTCACGGTACTTATTGCAGTTCTTGCTGTTGTGCCAATGATTATCATTGTGCCTATGGTTGCTTGGCATCTTGTTGCTCACAGGAAAAAGACTACAGCACCAAAACCACACACAGAAGAGAACACACAGACCACAGAAGCGCATGTAACCAGCCTCACATCAGACTGTAGTCTGAcagaagagtggagagaggaggaaccaTCGCAACAGGAAGATGTCAGCTATACAACAGTGCACACCAACACCAAGCAAAGGGCAAACATAGAACAGCAGAACGAGGAAACTACGGCCATCTACAGCTCTATATGGGAGCAACAAGCCAAGGAGGACCTCTACAGTGTAGTATCCAGACCCACTCCTAGGGGGAAACAGGCCCAGGATGACCCAGTCATCTACAGCACTGTGTTCAGGCAGTAGTTGAGATGTTGCCTGGCTAACCAAACTCCTTGCTCCGGCCAACCGCTATGCCACGCCCACAGATGTTAGTGTCTTCCGAGTCTGGATCGGAGTACCTTCCTGACAATTTCTAGAATGCAAACACATTCTAACCACTCggattggtcccagaaactgatgggttgggccagagccagtacacacgtgggtaaagcgcattgatagaggactcatctttttATCTTTGACatagcgtctgtgacagcatgtGCAGCACCATTTAGGCTATCTTCATTTTGAAGTAGTTAATTTTCTTCTTCAggttggctgatccctcctgatgacccggttggacatgactccaacatggccaccaggagggatcagccaataaaTGTTGGAAGTCTCATCCAGTTGattacattaaaatggtggaagccctcaaagGCGCTTTTAAAATTcttcattggctttgatactctgattggttagagattaTCCAATTGCTGATGACCTA
>XM_036941809.1
TGATACACACAGACGTTTTGATGACACTTGCAAAGACAGTTGCAGGGCAGCTTCTGATGAGTAACTCCAAGCCCCAAAATGCATTGACACAAAACGTCTGTGTTTTAAACTAGATGACTGAGGTTCACTCTGCATTTCTGACTGCTATATTAAGAACTCCGACTCAAGTGAAGGACCTTAGAGAGATTGCTGTTTGGCTACAGAGATGAGTGTTGGGCTGACACAACCCATCTGTATGGAAATAGCTCTGGCTCTACTCATTTTGCCAGGGGTTTTGTGCACCGACTGGCTTGTGGCATATCAACCGAAAGAGATCTGTGCAGTAAGAGGCTCTTCTGTTGTCATTTCATGCACATTTCACTATCCTGAGAAACTTGATAACAAGAACCTAACAGTGGAAAAAGTCATGTGGAGTCAAGGGAGGAAACAGTTTTTTGATGGCCCTTTCATCACTGAGAGTAATAATAGAACTCATAACAGCACCAAATTTGAGTACGTTGGTAACAAAGTTCATAATTGTTCTTTGCAAATCCACCAAGTAGAGCAGAGAGACAGTGGAGAATATGCATTCAGATTTGAAACTAACAACGGCAATTGGACGGGAAAGAACGCTACAAACGTGAATGTTTCTGAGTTGTTCATTTCGATGACAACACCCAAAGTAGGCGAACCAATAAAAGAAGGGGATTGTGTGAATCTGACCTGTATGTACAACTGTTCATCTGCAGTTATGTGGTTCAAGAACAGAAAACCCCTGCAAGAGGAGTCCTCAACTCTTTACCTCCGTGACATATCCTTTCAAGACTCTGGAAACTACTCATGTTCGCCAAAGCATTACAACAGACCACTTTCTGAGGTTATCAGGGTCAATGTTGAATATGGCCCTAGGAATACCTCAGTCTCAGTCTGGCCGTCGTCTGAAGTTTTGGAGGGTAGTGATGTTACTTTGACCTGCAGCAGCAATGCTAACCCAACATTGAACTACACTTGGTTTAAAATAGATGGAGGCAGTTGTCTGGAAATGGTATATCAGGCTGAGCTACAGTTTAATGTTACTCTCACTGGTAATAGTGGGAAATACTTCTGTGTCGTCAGCAATAAGCATGGAAGACAGAATTCCACTATTCTATCACTGAAAGTCAAAGGTAAGTACAATAACATGTTGTAACCACAACGGGTTACAAAGAGTAACAATTCCAACAATCAGAAATCTGAACAACTTAAATGCAAAAACAAATGCACTTGTCTTTTCCTAATAGCACTGACTTTTCTTATAACTTCTTTATTGAGGACAAATGTgtttactatgactgtgatatgtggttgtctcacctagatatcttaagatgaatgcactgattgtaagtcactttggacaagagcgtctgctaaattatttaaatgtattttaaatgatAATGCTTTTGTGTTCATATGCAGATCATGCAAAGGGGATGGTAGCTGTGACACTCACGGTACTTATTGCAGTTCTTGCTGTTGTGCCAATGATTATCATTGTGCCTATGGTTGCTTGGCATCTTGTTGCTCACAGGAAAAAGACTACAGCACCAAAACCACACACAGAAGAGAACACACAGACCACAGAAGCGCATGTAACCAGCCTCACATCAGACTGTAGTCTGAcagaagagtggagagaggaggaaccaTCGCAACAGGAAGATGTCAGCTATACAACAGTGCACACCAACACCAAGCAAAGGGCAAACATAGAACAGCAGAACGAGGAAACTACGGCCATCTACAGCTCTATATGGGAGCAACAAGCCAAGGAGGACCTCTACAGTGTAGTATCCAGACCCACTCCTAGGGGGAAACAGGCCCAGGATGACCCAGTCATCTACAGCACTGTGTTCAGGCAGTAGTTGAGATGTTGCCTGGCTAACCAAACTCCTTGCTCCGGCCAACCGCTATGCCACGCCCACAGATGTTAGTGTCTTCCGAGTCTGGATCGGAGTACCTTCCTGACAATTTCTAGAATGCAAACACATTCTAACCACTCggattggtcccagaaactgatgggttgggccagagccagtacacacgtgggtaaagcgcattgatagaggactcatctttttATCTTTGACatagcgtctgtgacagcatgtGCAGCACCATTTAGGCTATCTTCATTTTGAAGTAGTTAATTTTCTTCTTCAggttggctgatccctcctgatgacccggttggacatgactccaacatggccaccaggagggatcagccaataaaTGTTGGAAGTCTCATCCAGTTGattacattaaaatggtggaagccctcaaagGCGCTTTTAAAATTcttcattggctttgatactctgattggttagagattaTCCAATTGCTGATGACCTA
>XM_021558939.2
GCTTGCTGATACACACAGACGTTTTGATGACACTTGCAAAGACAGTTGCAGGGCAGCTTCTGATGAGTAACTCCAAGCCCCAAAATGCATTGACACAAAACGTCTGTGTTTTAAACTAGATGACTGAGGTTCACTCTGCATTTCTGACTGCTATATTAAGAACTCCGACTCAAGTGAAGGACCTTAGAGAGATTGCTGTTTGGCTACAGAGATGAGTGTTGGGCTGACACAACCCATCTGTATGGAAATAGCTCTGGCTCTACTCATTTTGCCAGATCTTTGTTTCAGGGGTTTTGTGCACCGACTGGCTTGTGGCATATCAACCGAAAGAGATCTGTGCAGTAAGAGGCTCTTCTGTTGTCATTTCATGCACATTTCACTATCCTGAGAAACTTGATAACAAGAACCTAACAGTGGAAAAAGTCATGTGGAGTCAAGGGAGGAAACAGTTTTTTGATGGCCCTTTCATCACTGAGAGTAATAATAGAACTCATAACAGCACCAAATTTGAGTACGTTGGTAACAAAGTTCATAATTGTTCTTTGCAAATCCACCAAGTAGAGCAGAGAGACAGTGGAGAATATGCATTCAGATTTGAAACTAACAACGGCAATTGGACGGGAAAGAACGCTACAAACGTGAATGTTTCTGAGTTGTTCATTTCGATGACAACACCCAAAGTAGGCGAACCAATAAAAGAAGGGGATTGTGTGAATCTGACCTGTATGTACAACTGTTCATCTGCAGTTATGTGGTTCAAGAACAGAAAACCCCTGCAAGAGGAGTCCTCAACTCTTTACCTCCGTGACATATCCTTTCAAGACTCTGGAAACTACTCATGTTCGCCAAAGCATTACAACAGACCACTTTCTGAGGTTATCAGGGTCAATGTTGAATATGGCCCTAGGAATACCTCAGTCTCAGTCTGGCCGTCGTCTGAAGTTTTGGAGGGTAGTGATGTTACTTTGACCTGCAGCAGCAATGCTAACCCAACATTGAACTACACTTGGTTTAAAATAGATGGAGGCAGTTGTCTGGAAATGGTATATCAGGCTGAGCTACAGTTTAATGTTACTCTCACTGGTAATAGTGGGAAATACTTCTGTGTCGTCAGCAATAAGCATGGAAGACAGAATTCCACTATTCTATCACTGAAAGTCAAAGATCATGCAAAGGGGATGGTAGCTGTGACACTCACGGTACTTATTGCAGTTCTTGCTGTTGTGCCAATGATTATCATTGTGCCTATGGTTGCTTGGCATCTTGTTGCTCACAGGAAAAAGACTACAGCACCAAAACCACACACAGAAGAGAACACACAGACCACAGAAGCGCATGTAACCAGCCTCACATCAGACTGTAGTCTGAcagaagagtggagagaggaggaaccaTCGCAACAGGAAGATGTCAGCTATACAACAGTGCACACCAACACCAAGCAAAGGGCAAACATAGAACAGCAGAACGAGGAAACTACGGCCATCTACAGCTCTATATGGGAGCAACAAGCCAAGGAGGACCTCTACAGTGTAGTATCCAGACCCACTCCTAGGGGGAAACAGGCCCAGGATGACCCAGTCATCTACAGCACTGTGTTCAGGCAGTAGTTGAGATGTTGCCTGGCTAACCAAACTCCTTGCTCCGGCCAACCGCTATGCCACGCCCACAGATGTTAGTGTCTTCCGAGTCTGGATCGGAGTACCTTCCTGACAATTTCTAGAATGCAAACACATTCTAACCACTCggattggtcccagaaactgatgggttgggccagagccagtacacacgtgggtaaagcgcattgatagaggactcatctttttATCTTTGACatagcgtctgtgacagcatgtGCAGCACCATTTAGGCTATCTTCATTTTGAAGTAGTTAATTTTCTTCTTCAggttggctgatccctcctgatgacccggttggacatgactccaacatggccaccaggagggatcagccaataaaTGTTGGAAGTCTCATCCAGTTGattacattaaaatggtggaagccctcaaagGCGCTTTTAAAATTcttcattggctttgatactctgattggttagagattaTCCAATTGCTGATGACCTA
>XM_021558941.2
GCTTGCTGATACACACAGACGTTTTGATGACACTTGCAAAGACAGTTGCAGGGCAGCTTCTGATGAGTAACTCCAAGCCCCAAAATGCATTGACACAAAACGTCTGTGTTTTAAACTAGATGACTGAGGTTCACTCTGCATTTCTGACTGCTATATTAAGAACTCCGACTCAAGTGAAGGACCTTAGAGAGATTGCTGTTTGGCTACAGAGATGAGTGTTGGGCTGACACAACCCATCTGTATGGAAATAGCTCTGGCTCTACTCATTTTGCCAGGGGTTTTGTGCACCGACTGGCTTGTGGCATATCAACCGAAAGAGATCTGTGCAGTAAGAGGCTCTTCTGTTGTCATTTCATGCACATTTCACTATCCTGAGAAACTTGATAACAAGAACCTAACAGTGGAAAAAGTCATGTGGAGTCAAGGGAGGAAACAGTTTTTTGATGGCCCTTTCATCACTGAGAGTAATAATAGAACTCATAACAGCACCAAATTTGAGTACGTTGGTAACAAAGTTCATAATTGTTCTTTGCAAATCCACCAAGTAGAGCAGAGAGACAGTGGAGAATATGCATTCAGATTTGAAACTAACAACGGCAATTGGACGGGAAAGAACGCTACAAACGTGAATGTTTCTGTTATGTGGTTCAAGAACAGAAAACCCCTGCAAGAGGAGTCCTCAACTCTTTACCTCCGTGACATATCCTTTCAAGACTCTGGAAACTACTCATGTTCGCCAAAGCATTACAACAGACCACTTTCTGAGGTTATCAGGGTCAATGTTGAATATGGCCCTAGGAATACCTCAGTCTCAGTCTGGCCGTCGTCTGAAGTTTTGGAGGGTAGTGATGTTACTTTGACCTGCAGCAGCAATGCTAACCCAACATTGAACTACACTTGGTTTAAAATAGATGGAGGCAGTTGTCTGGAAATGGTATATCAGGCTGAGCTACAGTTTAATGTTACTCTCACTGGTAATAGTGGGAAATACTTCTGTGTCGTCAGCAATAAGCATGGAAGACAGAATTCCACTATTCTATCACTGAAAGTCAAAGATCATGCAAAGGGGATGGTAGCTGTGACACTCACGGTACTTATTGCAGTTCTTGCTGTTGTGCCAATGATTATCATTGTGCCTATGGTTGCTTGGCATCTTGTTGCTCACAGGAAAAAGACTACAGCACCAAAACCACACACAGAAGAGAACACACAGACCACAGAAGCGCATGTAACCAGCCTCACATCAGACTGTAGTCTGAcagaagagtggagagaggaggaaccaTCGCAACAGGAAGATGTCAGCTATACAACAGTGCACACCAACACCAAGCAAAGGGCAAACATAGAACAGCAGAACGAGGAAACTACGGCCATCTACAGCTCTATATGGGAGCAACAAGCCAAGGAGGACCTCTACAGTGTAGTATCCAGACCCACTCCTAGGGGGAAACAGGCCCAGGATGACCCAGTCATCTACAGCACTGTGTTCAGGCAGTAGTTGAGATGTTGCCTGGCTAACCAAACTCCTTGCTCCGGCCAACCGCTATGCCACGCCCACAGATGTTAGTGTCTTCCGAGTCTGGATCGGAGTACCTTCCTGACAATTTCTAGAATGCAAACACATTCTAACCACTCggattggtcccagaaactgatgggttgggccagagccagtacacacgtgggtaaagcgcattgatagaggactcatctttttATCTTTGACatagcgtctgtgacagcatgtGCAGCACCATTTAGGCTATCTTCATTTTGAAGTAGTTAATTTTCTTCTTCAggttggctgatccctcctgatgacccggttggacatgactccaacatggccaccaggagggatcagccaataaaTGTTGGAAGTCTCATCCAGTTGattacattaaaatggtggaagccctcaaagGCGCTTTTAAAATTcttcattggctttgatactctgattggttagagattaTCCAATTGCTGATGACCTA
>XM_036941808.1
GCTTGCTGATACACACAGACGTTTTGATGACACTTGCAAAGACAGTTGCAGGGCAGCTTCTGATGAGTAACTCCAAGCCCCAAAATGCATTGACACAAAACGTCTGTGTTTTAAACTAGATGACTGAGGTTCACTCTGCATTTCTGACTGCTATATTAAGAACTCCGACTCAAGTGAAGGACCTTAGAGAGATTGCTGTTTGGCTACAGAGATGAGTGTTGGGCTGACACAACCCATCTGTATGGAAATAGCTCTGGCTCTACTCATTTTGCCAGGGGTTTTGTGCACCGACTGGCTTGTGGCATATCAACCGAAAGAGATCTGTGCAGTAAGAGGCTCTTCTGTTGTCATTTCATGCACATTTCACTATCCTGAGAAACTTGATAACAAGAACCTAACAGTGGAAAAAGTCATGTGGAGTCAAGGGAGGAAACAGTTTTTTGATGGCCCTTTCATCACTGAGAGTAATAATAGAACTCATAACAGCACCAAATTTGAGTACGTTGGTAACAAAGTTCATAATTGTTCTTTGCAAATCCACCAAGTAGAGCAGAGAGACAGTGGAGAATATGCATTCAGATTTGAAACTAACAACGGCAATTGGACGGGAAAGAACGCTACAAACGTGAATGTTTCTGAGTTGTTCATTTCGATGACAACACCCAAAGTAGGCGAACCAATAAAAGAAGGGGATTGTGTGAATCTGACCTGTATGTACAACTGTTCATCTGCAGTTATGTGGTTCAAGAACAGAAAACCCCTGCAAGAGGAGTCCTCAACTCTTTACCTCCGTGACATATCCTTTCAAGACTCTGGAAACTACTCATGTTCGCCAAAGCATTACAACAGACCACTTTCTGAGGTTATCAGGGTCAATGTTGAATATGGCCCTAGGAATACCTCAGTCTCAGTCTGGCCGTCGTCTGAAGTTTTGGAGGGTAGTGATGTTACTTTGACCTGCAGCAGCAATGCTAACCCAACATTGAACTACACTTGGTTTAAAATAGATGGAGGCAGTTGTCTGGAAATGGTATATCAGGCTGAGCTACAGTTTAATGTTACTCTCACTGGTAATAGTGGGAAATACTTCTGTGTCGTCAGCAATAAGCATGGAAGACAGAATTCCACTATTCTATCACTGAAAGTCAAAGATCATGCAAAGGGGATGGTAGCTGTGACACTCACGGTACTTATTGCAGTTCTTGCTGTTGTGCCAATGATTATCATTGTGCCTATGGTTGCTTGGCATCTTGTTGCTCACAGGAAAAAGACTACAGCACCAAAACCACACACAGAAGAGAACACACAGACCACAGAAGCGCATGTAACCAGCCTCACATCAGACTGTAGTCTGAcagaagagtggagagaggaggaaccaTCGCAACAGGAAGATGTCAGCTATACAACAGTGCACACCAACACCAAGCAAAGGGCAAACATAGAACAGCAGAACGAGGAAACTACGGCCATCTACAGCTCTATATGGGAGCAACAAGCCAAGGAGGACCTCTACAGTGTAGTATCCAGACCCACTCCTAGGGGGAAACAGGCCCAGGATGACCCAGTCATCTACAGCACTGTGTTCAGGCAGTAGTTGAGATGTTGCCTGGCTAACCAAACTCCTTGCTCCGGCCAACCGCTATGCCACGCCCACAGATGTTAGTGTCTTCCGAGTCTGGATCGGAGTACCTTCCTGACAATTTCTAGAATGCAAACACATTCTAACCACTCggattggtcccagaaactgatgggttgggccagagccagtacacacgtgggtaaagcgcattgatagaggactcatctttttATCTTTGACatagcgtctgtgacagcatgtGCAGCACCATTTAGGCTATCTTCATTTTGAAGTAGTTAATTTTCTTCTTCAggttggctgatccctcctgatgacccggttggacatgactccaacatggccaccaggagggatcagccaataaaTGTTGGAAGTCTCATCCAGTTGattacattaaaatggtggaagccctcaaagGCGCTTTTAAAATTcttcattggctttgatactctgattggttagagattaTCCAATTGCTGATGACCTA

Function

NR:

description
sialoadhesin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941811.1 False 1211 mRNA 0.46 8 62019705 62022644
XM_036941809.1 False 2382 mRNA 0.43 10 62019705 62025553
XM_021558939.2 False 2106 mRNA 0.44 11 62019705 62025559
XM_021558941.2 False 1997 mRNA 0.45 11 62019705 62025559
XM_036941808.1 True 2093 mRNA 0.45 11 62019705 62025559

Neighbor

gene id symbol gene type direction distance location
LOC110512085 LOC106601929 coding downstream 3000 61946652 ~ 62016705 (-)
LOC110486965 LOC100135781 coding downstream 468994 61546265 ~ 61550711 (-)
LOC110538808 LOC106601873 coding downstream 993454 61005929 ~ 61026251 (-)
LOC110486976 LOC106606471 coding downstream 1453771 60460043 ~ 60565934 (-)
LOC110486979 LOC106606406 coding downstream 1610985 60403617 ~ 60408720 (-)
LOC110487033 LOC106606440 coding upstream 5117 62030676 ~ 62064793 (-)
LOC110487041 LOC105013038 coding upstream 41545 62067104 ~ 62098264 (-)
LOC110487058 LOC106606437 coding upstream 95226 62118425 ~ 62160094 (-)
LOC118938342 LOC106606436 coding upstream 140690 62164135 ~ 62174550 (-)
LOC110485304 LOC106601897 coding upstream 149681 62175239 ~ 62180718 (-)
G1194010 NA non-coding downstream 109929 61909381 ~ 61909776 (-)
G1193836 NA non-coding downstream 112235 61907174 ~ 61907470 (-)
G1193821 NA non-coding downstream 136673 61882794 ~ 61883032 (-)
G1193815 NA non-coding downstream 150504 61868954 ~ 61869201 (-)
G1193735 NA non-coding downstream 235920 61783468 ~ 61783785 (-)
G1194083 NA non-coding upstream 76062 62101621 ~ 62101913 (-)
G1194084 NA non-coding upstream 80839 62106398 ~ 62106734 (-)
G1194086 NA non-coding upstream 84443 62110002 ~ 62110217 (-)
G1194054 NA non-coding upstream 90208 62115767 ~ 62118209 (-)
G1193568 NA other downstream 434445 61584774 ~ 61585260 (-)
G1193386 NA other downstream 742047 61275745 ~ 61277658 (-)
G1192815 NA other downstream 1377520 60641675 ~ 60642185 (-)
G1194074 NA other upstream 44550 62070109 ~ 62070835 (-)
G1194306 LOC106600182 other upstream 430345 62455904 ~ 62499352 (-)
LOC118938346 LOC106606432 other upstream 444359 62469918 ~ 62474424 (-)
G1194521 NA other upstream 705395 62730954 ~ 62735710 (-)

Expression


Co-expression Network