LOC110486979 (LOC106606406)


Basic Information

Item Value
gene id LOC110486979
gene name LOC106606406
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 60403617 ~ 60408720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941785.1
AGTCAAGACGAATTGTCACGCCACTTCTTACGCAACAGCCCTAAAGAAGGAGATCaaagttttttgttttgttgttaaaTTGCCTTTACATTTCTTACAGGCTACATTTGAATCTGTCATCAGGGAATCATCACATCAATGGGGTTGTTAAAGAAGATAGAGACTGAGTTTCTTTGCTGTGAGAAGGAAAAAGAAGTTGTTGCCACAGATGCTGTGGAATTCCTCGGCCAAATCGAAAAGATTGTGTTGAAACATCGCCACAACAAGATACCTCTTGCAAAGCCGAAAAGTTACGAGTTGAGAATCGGGGGTCTGGAGGACACTGTTCACGCTGGAGATGGTGAACAGTTAGAAGTTTGGAAAGACTGCTACCTTCCAGAGAGAATGGAGATGGTGGTCATTGGTGCCCTGGATGACTTCCGCTGTTCGGCAGCAGGATGGCAGCTGGTTCTCCTGTTATGTGAAGATGGCAATGTCTACGCCTACGAGTTTGAAGTTCTACACCTTGTTGCCAGAAGCTTGGAAGATCTCTTTAAATCTGGAGCAGAGTTCCCAGGACTGGAGAAACACAGATTTGGAGAATGCTTTGAGGAATTGactgaggaagagatggagaaagagatgcAATGTGACGAAATAAAGAAAATCAATGACGAGCATATTCAGTTCCGAAGAAGTTTGGAGATTGAGATGCTGGGGGATCTCAAAGCAATCAGTCAATCTGAGCCAAACATTCAAACCCAACAAAGTAATGAGCCAATTCGGACCGAATATTCAAGGCCTTCAAAGGAAGCACTGAAAAGGAAGCACTAcgaattcaatggctcagacacaagaggatTACAATACTCACAAgaggattacaaaaagaaaaccagccccgtcgcggaccaggatgccttgctcccagacagactaaataacgtctttgctcgctttgaggacaatacagtgccactgacacggcccgctaccaaaacctgggactctccttcactgcagccgacgtgagtaaaacatttaaacgtgttaactctcgcaaggctgcaggcccagacggcatccccagccgcatcctcagagtgTGGAGTGTGCTCCACAGAGTGTGctctggtgtgtttacggacatattcaatcaaaccttatcccagtctgctgtccccatatgcttcaagagggccaccattgttcctgtttccaagaaagctaaggtaactgagct
>XM_036941786.1
AGTCAAGACGAATTGTCACGCCACTTCTTACGCAACAGCCCTAAAGAAGGAGATCaaagttttttgttttgttgttaaaTTGCCTTTACATTTCTTACAGGCTACATTTGAATCTGTCATCAGGGAATCATCACATCAATGGGGTTGTTAAAGAAGATAGAGACTGAGTTTCTTTGCTGTGAGAAGGAAAAAGAAGATGCTGTGGAATTCCTCGGCCAAATCGAAAAGATTGTGTTGAAACATCGCCACAACAAGATACCTCTTGCAAAGCCGAAAAGTTACGAGTTGAGAATCGGGGGTCTGGAGGACACTGTTCACGCTGGAGATGGTGAACAGTTAGAAGTTTGGAAAGACTGCTACCTTCCAGAGAGAATGGAGATGGTGGTCATTGGTGCCCTGGATGACTTCCGCTGTTCGGCAGCAGGATGGCAGCTGGTTCTCCTGTTATGTGAAGATGGCAATGTCTACGCCTACGAGTTTGAAGTTCTACACCTTGTTGCCAGAAGCTTGGAAGATCTCTTTAAATCTGGAGCAGAGTTCCCAGGACTGGAGAAACACAGATTTGGAGAATGCTTTGAGGAATTGactgaggaagagatggagaaagagatgcAATGTGACGAAATAAAGAAAATCAATGACGAGCATATTCAGTTCCGAAGAAGTTTGGAGATTGAGATGCTGGGGGATCTCAAAGCAATCAGTCAATCTGAGCCAAACATTCAAACCCAACAAAGTAATGAGCCAATTCGGACCGAATATTCAAGGCCTTCAAAGGAAGCACTGAAAAGGAAGCACTAcgaattcaatggctcagacacaagaggatTACAATACTCACAAgaggattacaaaaagaaaaccagccccgtcgcggaccaggatgccttgctcccagacagactaaataacgtctttgctcgctttgaggacaatacagtgccactgacacggcccgctaccaaaacctgggactctccttcactgcagccgacgtgagtaaaacatttaaacgtgttaactctcgcaaggctgcaggcc

Function

NR:

description
uncharacterized protein LOC110486979 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941785.1 False 1222 mRNA 0.46 6 60403617 60408720
XM_036941786.1 True 1041 mRNA 0.45 6 60403786 60408720

Neighbor

gene id symbol gene type direction distance location
LOC118936527 LOC106606405 coding downstream 16656 60377853 ~ 60386961 (-)
LOC110486987 cyp2k4 coding downstream 65190 60274725 ~ 60367022 (-)
LOC110486988 LOC106606456 coding downstream 140788 60260720 ~ 60262829 (-)
LOC118938340 NA coding downstream 206897 60192912 ~ 60196843 (-)
LOC110516349 cfap70 coding downstream 445411 59938111 ~ 59958206 (-)
LOC110486976 LOC106606471 coding upstream 55806 60460043 ~ 60565934 (-)
LOC110538808 LOC106601873 coding upstream 598106 61005929 ~ 61026251 (-)
LOC110486965 LOC100135781 coding upstream 1137545 61546265 ~ 61550711 (-)
LOC110512085 LOC106601929 coding upstream 1537932 61946652 ~ 62016705 (-)
LOC110487040 LOC106606439 coding upstream 1610985 62019705 ~ 62025559 (-)
G1192674 NA non-coding downstream 16944 60386458 ~ 60386673 (-)
G1192673 NA non-coding downstream 22049 60381341 ~ 60381568 (-)
G1192531 NA non-coding downstream 33277 60367628 ~ 60370340 (-)
G1192705 NA non-coding upstream 48880 60457600 ~ 60458463 (-)
G1192706 NA non-coding upstream 50002 60458722 ~ 60459300 (-)
G1192754 NA non-coding upstream 154911 60563631 ~ 60564207 (-)
G1192762 NA non-coding upstream 183116 60591836 ~ 60592136 (-)
G1192535 NA other downstream 89063 60219166 ~ 60314554 (-)
G1192519 NA other downstream 195347 60205782 ~ 60208270 (-)
LOC110516720 adcy9 other downstream 933326 59382826 ~ 59472065 (-)
G1192757 NA other upstream 163650 60572370 ~ 60575197 (-)
G1192815 NA other upstream 232955 60641675 ~ 60642185 (-)
G1193386 NA other upstream 867025 61275745 ~ 61277658 (-)

Expression


Co-expression Network