LOC110516349 (cfap70)


Basic Information

Item Value
gene id LOC110516349
gene name cfap70
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59938111 ~ 59958206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941764.1
TGGAAACGGGGACGCTGATGTATTCACCTGTTGCAGTGCAGGGGGAGTTTTTGTTTATCCAGAACAATCAACAAACATTTGACTTTTACTCACTCTGATTTACAAAAACAGAATGGAACAATTTCGTGGTGTGGGAGACAAAGCAACACTCGTGAAAATAACAGTACTTCGTGGAAATAACCTGAGGGGCAACAAGGCTGAGTCCATCCTGAACTATGTGAGAGCTGAGTTCAATGGCATCGTCCTGGGAGATTCCCAGAAGCTGGATGCTGCTGTGGATCAGGGCGTGGATTACAACTTCACCTGCAGCTTTGAGTGCTCAGATGCTGCCCACACATTAGATGACATGGCACACAAACCTGTCATATTGACAGTGATTGAGGTCCTTCCCAAGGAGAAGAAGCAGAAGGAGGAGAAGACTGCAGTTATAGGGCAAGCTATAGTGGACTTGCTACCTCTCTTGCATGGTCAGGTCAGCTTCTTATCCACTGTGCTACTTCATCCAACTCCTGGCTCACCTGCGGAGGCAGCCTCACAGGAGGGCAGCTGTAAACCATCTCTAGACGTGACCGTCTGTGTTCCCGAGCCTCTGCTATCCGGCGTCCAGCTGTCTGACTCCAACCTGCTGAAGGTTACTGTGGAGACAGCTTACTCTGTTCCAGAGGTGTGGAACCCTGTCTCTGGGTCTGGTCCTCTCTCCAGCTATGTGGCTGCCCTGCAGGTTCCCCTCACTGCAGAGAAAGAGCAGGTGCTGATGTTCTCCAATGGGCTGCTGAAGGTGGGCGGGGAGAGTGAACCCATGGGAAGACCCAGGAAGTGGCCCCTGGGTCCCCTGTTGGCTCCTGGAGCTCAGTTCATACCTGGTGTCTCCATGGAGGGAGAGCCCATTGAGATGGAGGATGGGGATCTCACCAGCATAGAGGACAGGGATTTCCGGAAAGAAGCGGAGACCAATAAGAAGAGAGTGAGCTGGGACACAGAGCGTCGTTGCTTTCTGGATGCAGAGGGTGCAGCCTGtCTGACCCGTAGGATAGCAGAAAGCAGACTGTGGCCAGTAGAGGTCATGAGGTCACCACAGGTTGGAGCCACTAAGGGAGGGAAGGCTGGCAAAGACAAGGGAgGTGAGGATGAGAcccaactctccttccatggagTGGCATACGTGGACATGGCGCCCCTGTTGTACCCCGGGGCGAGGCGTGTCCGTGGGGCGTACCGGCTCTACCCCTTCTACGACTCTGACCTACTGGTCAAGGCTAAGAGAAACATCAGTGTTCTGAGAGAGAGTATCAGGGCTCCGGCCACCCAGGGCCGAGGTAGGGCCCCCTCCTCCGTAGGCTCCTGCAAGGCGGTCCCTAGTAAGATGCTTGACGGCGGTCACAAGGGCGGGAAGGACACCAAGGAATCGCCCAAAAGGcCCGGGACACAGGGGAAGTCAGCACCCATTGGCACTGATAGTGTGACGCTGGTTGAAACTGAACAGCAGCAACAAGTGAACGCAGAGGGTCAGATGTATGCAGATTCCAGAACCTACATCATCATTGAAATCGCTCTTGAGAAGTCGCTGGTGCCAAAGAGATCACCGGAAGAGTTAGCCAAAAGGGTGATGGAGCTGATACCTCCTAGAGCTCCTTTGCCTCGCAGACCTGCTGGAGCAGAGAGAGCTGTGCAGGAGTACCAGGCCCAGATAGCCAGTGTGGCAGGCCAGGTGTTGGAGCAGTACCAGCAGCTGTTCGGGCCTGCCTTCCTGCCCGGAGAGAAGCCTCTGGACCCAACCAGCCAGGAGCAGCGCAAGACCAAGCTCCTGGGAGAACTCAACTATTCTGGGAAGTACTTTGCTTTCAAGGAGCAGATTAAGTACTCTGTGGTGCGTATCGTGAGGGAGAAGATGCTGCGGACTGAGGCCTTCTCAGATCCTGAGCAGCTGCAGGCCTTCCTCAGCCAGCTCTATGTGTTCCTGGTGGACGAGATGCACGTCGCCCTCAACAAGACTTTGTCAGTGGATGCCCAGGAGACTCAGCCTCGCCCCCTGGTGGACTGTGCCCAGCTCATCCACTTTGCCAAGGAGGCCCAGCTCAACGGGGACTACCAGCTAGCTGCCCAGTACTACCAGGAGCAGCTGACTCGTGACCGTAGCGACCCAGCCCACTGGTTTGACTACGGGGTGTTGTACATGCTGACGGCTGACTACCAGAAGGCTGAGGAGTGCTTCCACTACGCTGTGTCCATGGAGCGAACACACCTGCCCAGtttGCTTATGTGTGGTATCCTGGCAGAGATGGGTGGACGCCTTGAGGAGGCAGAGACATTCTTTGAAGGAGCCACGTGTGTGGACCCGGCCAATGTGGTGGCCTGGACTCTGTTTGGCCTGTTCTATGAGGGCCAGGAGAACTCCATCCAGACCGAGATGGCTTTCCTGGAGGCCACCAAGCAGCAGAGGGCAGCCCTGGTGGTCACCCCACCCTGCAGGGTGGAGACAAGGGTGGAGTCACCAGgcctgggggaggaggagcaggaggtggCGAACTGTGAGTCTTTCACCATCGAGCCAGACGTGGATGGAGACACAGAAGCCAGTGTGGTGACCGGGTCTCAGAGCTGCCAGGGCAACAAGCCTGGGGAGGGATACCAGGGAGGTGCTGAGGCTGAACCTAGTGCCATGCGACACCTAGCAACCCCCACCAGACTAAACACCAccatctatatggagacagtgcAGTTCCTGCTGCAGAACAACGCACTACAGATGGCCCAGAGAGCGCTGGCCCAGGAGCTCTTGTGTCCAGGGGGGGGTCTGAGCAGCTCCTACCACCTGGCCCTGGCCCGCCTGCAGATGCTCAGGGCAGAGTACGGCAGCGCCGAGTCCAGCCTGAAGGAGGCGCTCAACGACAGCTTTCAGGACCCAGATGTATGGGCGTTGTTTGGGCACATACACCATCTGACTGGGGAGTTTGGGAAGGCCCAGGAGTGTTACGAGAGGACCCTGGACTTTGTGACGGatgccacagacacacaccccatCTACCTGCGCCTGGGATCCATCTACCTGCAGGAAGGGGAGTTTCAGAGGGCGAAAACAACTTACCTGCGCGCCTGCAAGAGCTCCCCCTCCTGCCTCACCTGGCTGGGACTAGGGATCGCCTGTTACCGGCTAGGGGAGCTGACTGAAGCAGAGGATGCACTGACAGAGGCCAACATCCTGAACAACGGGAACGCGGAGGTGTGGGGTTACCTGTCTCTAGTTTGTTTGCAGACGGGCAGAAGACTTGAGGCAGAGCAGTCCTACAAATACGCCCTGCAGTTGAACCTACAGAAAGAGGCAGTTCTTCATGAGATCAAGGCACTCCAAGATCATGTTGGCTTTGGAAATCCATGTTTCTGAAGAACAACTGCCGGCACCATCAATGATTTAGGTTAAAAAACAAAGATGAATTGTAATTCTGGTTGGTAAATACCTAATGGTTGGCATCGCAAAGTGACTGAATTGTGGAAGGAATTACACATCAATGACTTGTACACTTGTCTGCATCTTCAGCTATATCTGATTAAAAGTTGTTACTTTTGCATAATGTAGGATATAATATTGTGACACAACAAAGATGTGCAGATCCAGAGAGAGTGTCTGTCCAGAGGTGGAAAAAGTAGTCATTTGTCATACTTGAATTAAAGTAAAGAAACCTTGATGATAATGActgaagtgaaagtcacccataTTGCTTTAGTAAAAGTCTacaagtatctggttttaaatgtacttaagtatcaaaagtttaAGTAAATGCTATAAatctaattccttatattaagcaaaccagatggcacaattctTAGGACAACCAGGGGCACATCAAGAATCAGACCCCATTCGCGCACAATCACAATAATGTACAGTTGAGTAATGTACAGTTTATAAGCTACTTCCTTCTGCATACAacaagtgcattcggaaagtgttcagaccctttcactttttccacattttgttacgttacagccttattctaaaattaattaaattatgTACTCCTCTCattaatatacacacaataccccatgatgacaatgtgaaaacagtttttgtttatgtttgcaaaggggtttgaatacttttccGAATGGACTGAA

Function

symbol description
cfap70 Human ortholog(s) of this gene implicated in spermatogenic failure 41. Orthologous to human CFAP70 (cilia and flagella associated protein 70).

NR:

description
cilia- and flagella-associated protein 70-like

GO: NA

KEGG:

id description
K24932 CFAP70, TTC18; cilia- and flagella-associated protein 70

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941764.1 True 4125 mRNA 0.52 26 59938111 59958206

Neighbor

gene id symbol gene type direction distance location
LOC110512532 LOC106606500 coding downstream 5782 59921477 ~ 59932329 (-)
LOC110515614 LOC105008474 coding downstream 26043 59651360 ~ 59912068 (-)
LOC110487009 LOC106601835 coding downstream 289197 59644584 ~ 59648914 (-)
LOC118938337 LOC105021644 coding downstream 394992 59523790 ~ 59543119 (-)
LOC110487012 LOC106606491 coding downstream 421171 59481481 ~ 59516940 (-)
LOC118938340 NA coding upstream 234706 60192912 ~ 60196843 (-)
LOC110486988 LOC106606456 coding upstream 302514 60260720 ~ 60262829 (-)
LOC110486987 cyp2k4 coding upstream 316519 60274725 ~ 60367022 (-)
LOC118936527 LOC106606405 coding upstream 419647 60377853 ~ 60386961 (-)
LOC110486979 LOC106606406 coding upstream 445411 60403617 ~ 60408720 (-)
G1192462 NA non-coding downstream 1017 59936725 ~ 59937094 (-)
G1192459 NA non-coding downstream 16886 59919551 ~ 59921225 (-)
G1192458 NA non-coding downstream 20899 59916050 ~ 59917212 (-)
G1192453 NA non-coding downstream 25167 59912641 ~ 59912944 (-)
G1192439 NA non-coding downstream 61039 59876365 ~ 59877072 (-)
G1192468 NA non-coding upstream 3840 59962046 ~ 59962441 (-)
G1192469 NA non-coding upstream 4674 59962880 ~ 59963084 (-)
G1192470 NA non-coding upstream 5087 59963293 ~ 59963571 (-)
G1192471 NA non-coding upstream 5802 59964008 ~ 59964874 (-)
G1192473 NA non-coding upstream 11057 59969263 ~ 59970322 (-)
LOC110516720 adcy9 other downstream 467820 59382826 ~ 59472065 (-)
LOC110485268 LOC106601889 other downstream 623828 59289251 ~ 59380900 (-)
G1192205 NA other downstream 662262 59275141 ~ 59275849 (-)
G1192158 NA other downstream 816955 59119541 ~ 59121156 (-)
G1192082 NA other downstream 1028879 58906153 ~ 58909232 (-)
G1192519 NA other upstream 247576 60205782 ~ 60208270 (-)
G1192535 NA other upstream 260960 60219166 ~ 60314554 (-)
LOC110486976 LOC106606471 other upstream 599576 60460043 ~ 60565934 (-)

Expression


Co-expression Network