LOC110487009 (LOC106601835)


Basic Information

Item Value
gene id LOC110487009
gene name LOC106601835
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 59644584 ~ 59648914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941763.1
AAGACGTGATGATGAAGGCTGTGCAATGAAAATTGGTGCAATTTAAACAGCCATCCACTAGAGAGCAGTATTTTTATACAGAGAGAGCACCGGTTTGTGGATTTTCACCAAACTCGAATATCTTTGTTCCGAGTTTGGCCCTTGAACTTTGAACCTACTGCGACCTTGATGGGTGTACATGTGAAAACGCCGTGGTCCTCCACGGTCTTAttgtgtacagtactgtaaataaTCGGATAAACGCAATGGCGAAATATCTTGCGCAGATCATTGTCATGGGGGCGCAGGTAGTAGGACGGGCGTTTGCGCGTGCATTGCGGCAAGAATATGCAGcCAGTCAAGCTGCAGCGGAGGCCAGGGGGCGTGCCGGACAGCAGTCAGCAGCAGCCTCTAGTCTCACTGGGATTACCTTACAGGAGGCCCAGCAGATCCTCAATATCGCCACACTCACCCCTGAGGAGCTCCAGAAGAACTATGAACACCTTTTTAAAGTCAACGACAAGGAGGTGGGCGGATCTTTCTATCTACAGTCCAAGGTGGTGAGAGCGAAGGAGCGTCTAGATGAGGAGCTCTCTATTCAGACACAGGACAGTCAACCCAAACCCCCACCAGAGCAGAAGCAACAGACTCCAGAAACATGAACCGTCCCCCTCCCTACCCCACCCACTGTAAATTATACCCTCAATAAAAGCCTCATCCTTTTCTCAA

Function

NR:

description
mitochondrial import inner membrane translocase subunit tim16-like

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component

KEGG:

id description
K17805 PAM16, TIM16; mitochondrial import inner membrane translocase subunit TIM16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941763.1 True 708 mRNA 0.50 5 59644584 59648914

Neighbor

gene id symbol gene type direction distance location
LOC118938337 LOC105021644 coding downstream 101465 59523790 ~ 59543119 (-)
LOC110487012 LOC106606491 coding downstream 127644 59481481 ~ 59516940 (-)
LOC110516720 adcy9 coding downstream 172519 59382826 ~ 59472065 (-)
LOC110485268 LOC106601889 coding downstream 263684 59289251 ~ 59380900 (-)
LOC110485272 trap1 coding downstream 355739 59270597 ~ 59288845 (-)
LOC110515614 LOC105008474 coding upstream 2446 59651360 ~ 59912068 (-)
LOC110512532 LOC106606500 coding upstream 272563 59921477 ~ 59932329 (-)
LOC110516349 cfap70 coding upstream 289197 59938111 ~ 59958206 (-)
LOC118938340 NA coding upstream 543998 60192912 ~ 60196843 (-)
LOC110486988 LOC106606456 coding upstream 611806 60260720 ~ 60262829 (-)
G1192355 NA non-coding downstream 11660 59632023 ~ 59632924 (-)
G1192356 NA non-coding downstream 13129 59630994 ~ 59631455 (-)
G1192357 NA non-coding downstream 17906 59625821 ~ 59626678 (-)
G1192349 NA non-coding downstream 42297 59600162 ~ 59602287 (-)
G1192381 NA non-coding upstream 72983 59721897 ~ 59723417 (-)
G1192380 NA non-coding upstream 73149 59722063 ~ 59725151 (-)
G1192387 NA non-coding upstream 87634 59736548 ~ 59739126 (-)
G1192391 NA non-coding upstream 102726 59751640 ~ 59752325 (-)
G1192396 NA non-coding upstream 113105 59762019 ~ 59764877 (-)
G1192205 NA other downstream 368735 59275141 ~ 59275849 (-)
G1192158 NA other downstream 523428 59119541 ~ 59121156 (-)
G1192082 NA other downstream 735352 58906153 ~ 58909232 (-)
G1192519 NA other upstream 556868 60205782 ~ 60208270 (-)
G1192535 NA other upstream 570252 60219166 ~ 60314554 (-)
LOC110486987 cyp2k4 other upstream 629364 60274725 ~ 60367022 (-)
LOC110486976 LOC106606471 other upstream 908868 60460043 ~ 60565934 (-)

Expression


Co-expression Network