LOC110486976 (LOC106606471)


Basic Information

Item Value
gene id LOC110486976
gene name LOC106606471
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 60460043 ~ 60565934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941791.1
TACAAGCAGCCCGCGAAATGTTGTCCGCAGCGCTCAAAACTTCGCTTATCTTCTGGCTCACCGCAGACGCTCAAAAGGTGGAGTTTGTTAGTGCGTTGCTTGAGACCCCGGCTGCCTGTGGCTATTGGAAAAAAAGGCTTCTGAAATCCCAGTCTCATCATTGGCAATGCAAAAGCAGGAGGGACCGGAACAAGGACAAGAGCGCAGTTCACCTGTGTTTCAGGAGGTAGCCTAGCAGTGTGGTTTCTGCTCTACAGAGAGAAGACGCAATTCGACCCGTTCACTCGTTGTATCGTGACATGAGAAAAGTGTCGCTAGCCATGATTTCAACGTGCAGGTGAAACCGGAGAAGATGTTTTTTATTTCAGTCCCACTGCACAACTtctaaaacaaaaaacaataattAATCTTGTTTATCGTGCGCGAGCCCTCAAATATTTCGCGCCACTCTCTCAGACCTCACACTTTCTCAACTATAAACTGTTTGGAGTGAAAACAATGTCCCGCAAAAAGGCGGGTAAGGGCAAAAACGCCAACAGCAGCCCGACGACAGGCATCCCCACCGGAAACCAGAAGGGGGAAACTGGGAAGAGCACCGCAGGGACGGGGAGCGTGGTGCAGGCGAATGGTATGGTTCATCCGAGCAGACCCTCACTCAGCAACAGCAGCGAGTTTTATGACATCGCATTCAAGGTGATGCTGGTGGGAGACTCCGGGGTGGGGAAGACCTGTCTGCTGGTGCGCTTCAAAGACGGAGCTTTCCTGGCAGGAAGCTTCATCTCTACTGTGGGCATCGACTTCAGGAATAAAGTGATGAACATTGACAGACTGAAGGTGAAGCTTCAGATCTGGGACACAGCTGGACAGGAGCGTTTCCGCAGCGTCACACACGCCTACTACCGTGACGCCAAtgctctcctgCTGCTGTATGACGTGACCAACAGAACATCTTTTGACAACATCAAGGCCTGGCTGACTGAGATCCATGATTACGCCCAGCAGGATGTGGTCCTGATGCTGCTGGGAAACAAGGCTGATGCCACACAGCAGAgggtggtgaagagagaggatggagagaggctgGCCAAGGAGTTTGGGGTTCCATACATGGAGACCAGTGCAAAGTCTGGCCTCAATGTGGAGTTATCCTTCACTGCTGTGGCCAAaGAGCTGAAGCACAGGTCTATGAAGGAGCCCAACGAGCCCAAGTTTAAGCTTCAGGACTACGTCAACAAGGAGATGAAGAGTGCTGGATGTGCATGTTAGaacactgggtgtgtgtgtgtgtgtgcgtacatgtgcgCTTGCTAGCTCATGTCCTTCTCCACATCAGATGTGTTACACTCATACAAGGTGATGTTATATGACTACCTGTGGCCTCAGCCTGTGAGATAGAGAGCCAATCGTGTGTGAGATATACCTACGTCACTAACCACCCAGTTTGTCTTTCCTTTGTCCTCTATGCTCTCTGAAATAATCCATTATGTCCATATTCTAAGGTTATCTGTGAGgcgtctctctcctcacctccctcttttcctctcctttctctcttctctcctctcttcacctctctcccatctctcctctcctcagctttctcttttcctctcctttctctcttctctcctctctt
>TU1360688
AAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGAGCCACTCAAACTAGCTGATCTATAACCACTCAAACTAGCTGATCTATAACCACTCAAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGCTACTGTTTTAgcccatttctttttaaattacTTTTTGTTGATTATTTTGCTTCCTATCACTGTATGACTCCTGGCTTATGTCCCAATTATCACTCCtttctcccaaagtgtgcacttgtttacTTCCCTTCACTGATCTGAAAGGGTTAGTATGATTGGTATAAAAAGCATGATGGAAACTAGCCCAtacctccaccaatccaatgcttttagatttgtgGTAAGTAGTgtacaagtgcacacttcaggaaaaATATGTTTATTGGGACACACCACTTATATCCCCTATCACTGAATGAACCTCCATCACTGTCTTACTCGGTTAAACTCCACTGTCAGTTCTCCTGCCTGATCCAACGTGTTCATAATAAGAAAAGGAAAAGAGAGAAAGTCCCGCAGAGCTCATCGTATTAATGTATCTGGATGaatgtatgtattgtatgtagTCGAATGTACATAGTCAGGTCATTGTCAGTTGTCAGGCTGGCTCAGTCTCACAGTACagttgtaggatcttaatttgagccagttctTGACCACAGGAAAATAATCCAGCAGCAACTGGAaaagtgaattattatgtggattaaaatgaatggacatttttgtaggggttgatacattttcgttaaggcaaatcaagtctgacattttaaagtggaaattacaatctttagaagcctttttaaaccttgaatacatcACACATTTGCTTTTCCTCTCAGCGACAAAGAGTGATCACATTTAAGATTCTGCATCAGTAAGTCATATGTTCCTTTTCAGCCAACTTCAACTCACCAGCATTCTAATACAGTGGTATTCATTTATAACAAGCATTTTGCTAAAGATCACCCATAACCGAATGTAGTGAAATGTATATTCAACGTTAAAGTCAAGACATTGATGGAAAATGTTAGAAGTTAAAGTGTAGTGTCTTACCTGTCAAATCAAAATAAAGGCAGATTTGAATTCAGTGGCAATTTCAAAATCACTCTGAAGTCCAATACATCTAAAGTAAGTACAGTTTTAGAGATAGATTATGGTTAATGCATACATCTATTTTTCTGGTGGAAAAGTACTAATTACGATGTACAAAATGTTGAATTGATTTAAGTTGTCTTTTCCTGCCAGTAAATGTTTAGTCGAGGCTTCCGTAGATCTCTTGTAGTTGTGGTAAGTGTAGACCTAGTTGTGGTAGGTGTAGACCTAGTTGTGGTAAGTGTAGACCTAGTTGTGGTAAGTGTAGACCTAGCTTGATAATGAAGCGTTGAACCTAGAGAGAACTCAAATGAagcaaataaaatatttttttgtggaTTTTGTCTAAAGTGTTGTACAGTCATTTGGAACGAAATATACAATAATGAATAAAGGGAAACCAATAATATTTTGCAATATCTTTATGACCAGGCtattgtttccatgttgtttgaATCATCAATACTCTTTTGCTGTCTATTttttgtaatatactgtatatatatggtGAATGTTATGTATATAAAGTGTTTGACATCTTTAAACGTTTAATCAGGGTCATATCTTTTAAAAATCTTCAAGGATTTTTGTATTTACATGACATTTTTCTTTCTTCTTCCTTAACCACAAATGAAGATGTCATGTTGTTTGATTCTCATCTTTTATCAGTTCTCGGTTAATAATCAGTATTTCACAAAGATCCTTCATGTACTTTCAGTGTATTACCATCAACATCCATAGGAAACAGAATATTAaatgtacagtatttacataACTTGAAATGAGATGTTCAGACAATGTGTTGTTATATCTTCATGAGATGTTTTACTACTTTTCAGTGTCCATTGACTTTCTTCTCAAATTAAAGTTCAATACAATAAAGATTACAA
>TU1360694
AAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGAGCCACTCAAACTAGCTGATCTATAACCACTCAAACTAGCTGATCTATAACCACTCAAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGAACCACTCAAACTAGCTGATCTAGCTACTGTTTTAgcccatttctttttaaattacTTTTTGTTGATTATTTTGCTTCCTATCACTGTATGACTCCTGGCTTATGTCCCAATTATCACTCCtttctcccaaagtgtgcacttgtttacTTCCCTTCACTGATCTGAAAGGGTTAGTATGATTGGTATAAAAAGCATGATGGAAACTAGCCCAtacctccaccaatccaatgcttttagatttgtgGTAAGTAGTgtacaagtgcacacttcaggaaaaATATGTTTATTGGGACACACCACTTATATCCCCTATCACTGAATGAACCTCCATCACTGTCTTACTCGGTTAAACTCCACTGTCAGTTCTCCTGCCTGATCCAACGTGTTCATAATAAGAAAAGGAAAAGAGAGAAAGTCCCGCAGAGCTCATCGTATTAATGTATCTGGATGaatgtatgtattgtatgtagTCGAATGTACATAGTCAGGTCATTGTCAGTTGTCAGGCTGGCTCAGTCTCACAGTACagttgtaggatcttaatttgagccagttctTGACCACAGGAAAATAATCCAGCAGCAACTGGAaaagtgaattattatgtggattaaaatgaatggacatttttgtaggggttgatacattttcgttaaggcaaatcaagtctgacattttaaagtggaaattacaatctttagaagcctttttaaaccttgaatacatcACACATTTGCTTTTCCTCTCAGCGACAAAGAGTGATCACATTTAAGATTCTGCATCAGTAAGTCATATGTTCCTTTTCAGCCAACTTCAACTCACCAGCATTCTAATACAGTGGTATTCATTTATAACAAGCATTTTGCTAAAGATCACCCATAACCGAATGTAGTGAAATGTATATTCAACGTTAAAGTCAAGACATTGATGGAAAATGTTAGAAGTTAAAGTGTAGTGTCTTACCTGTCAAATCAAAATAAAGGCAGATTTGAATTCAGTGGCAATTTCAAAATCACTCTGAAGTCCAATACATCTAAAGTAAGTACAGTTTTAGAGATAGATTATGGTTAATGCATACATCTATTTTTCTGGTGGAAAAGTACTAATTACGATGTACAAAATGTTGAATTGATTTAAGTTGTCTTTTCCTGCCAGTAAATGTTTAGTCGAGGCTTCCGTAGATCTCTTGTAGTTGTGGTAAGTGTAGACCTAGTTGTGGTAAGTGTAGACCTAGTTGTGGTAAGTGTAGACCTAGCTTGATAATGAAGCGTTGAACCTAGAGAGAACTCAAATGAagcaaataaaatatttttttgtggaTTTTGTCTAAAGTGTTGTACAGTCATTTGGAACGAAATATACAATAATGAATAAAGGGAAACCAATAATATTTTGCAATATCTTTATGACCAGGCtattgtttccatgttgtttgaATCATCAATACTCTTTTGCTGTCTATTttttgtaatatactgtatatatatggtGAATGTTATGTATATAAAGTGTTTGACATCTTTAAACGTTTAATCAGGGTCATATCTTTTAAAAATCTTCAAGGATTTTTGTATTTACATGACATTTTTCTTTCTTCTTCCTTAACCACAAATGAAGATGTCATGTTGTTTGATTCTCATCTTTTATCAGTTCTCGGTTAATAATCAGTATTTCACAAAGATCCTTCATGTACTTTCAGTGTATTACCATCAACATCCATAGGAAACAGAATATTAaatgtacagtatttacataACTTGAAATGAGATGTTCAGACAATGTGTTGTTATATCTTCATGAGATGTTTTACTACTTTTCAGTGTCCATTGACTTTCTTCTCAAATTAAAGTTCAATACAATAAAGATTACAA
>TU1360696
TGCTCTACAGAGAGAAGACGCAATTCGACCCGTTCACTCGTTGTATCGTGACATGAGAAAAGTGTCGCTAGCCATGATTTCAACGTGCAGGTGAAACCGGAGAAGATGTTTTTTATTTCAGTCCCACTGCACAACTtctaaaacaaaaaacaataattAATCTTGTTTATCGTGCGCGAGCCCTCAAATATTTCGCGCCACTCTCTCAGACCTCACACTTTCTCAACTATAAACTGTTTGGAGTGAAAACAATGTCCCGCAAAAAGGCGGGTAAGGGCAAAAACGCCAACAGCAGCCCGACGACAGGCATCCCCACCGGAAACCAGAAGGGGGAAACTGGGAAGAGCACCGCAGGGACGGGGAGCGTGGTGCAGGCGAATGGTATGGTTCATCCGAGCAGACCCTCACTCAGCAACAGCAGCGAGTTTTATGACATCGCATTCAAGGTGATGCTGGTGGGAGACTCCGGGGTGGGGAAGACCTGTCTGCTGGTGCGCTTCAAAG

Function

NR:

description
ras-related protein Rab-26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941791.1 False 1636 mRNA 0.50 9 60464526 60565934
TU1360688 False 2053 lncRNA 0.35 2 60460043 60462158
TU1360694 False 2032 lncRNA 0.34 2 60460043 60462158
TU1360696 True 504 TUCP 0.50 2 60557782 60565687

Neighbor

gene id symbol gene type direction distance location
LOC110486979 LOC106606406 coding downstream 55806 60403617 ~ 60408720 (-)
LOC118936527 LOC106606405 coding downstream 77565 60377853 ~ 60386961 (-)
LOC110486987 cyp2k4 coding downstream 126099 60274725 ~ 60367022 (-)
LOC110486988 LOC106606456 coding downstream 201697 60260720 ~ 60262829 (-)
LOC118938340 NA coding downstream 267806 60192912 ~ 60196843 (-)
LOC110538808 LOC106601873 coding upstream 440892 61005929 ~ 61026251 (-)
LOC110486965 LOC100135781 coding upstream 980331 61546265 ~ 61550711 (-)
LOC110512085 LOC106601929 coding upstream 1380718 61946652 ~ 62016705 (-)
LOC110487040 LOC106606439 coding upstream 1453771 62019705 ~ 62025559 (-)
LOC110487033 LOC106606440 coding upstream 1464742 62030676 ~ 62064793 (-)
LOC110486976 LOC106606471 non-coding downstream 2368 60460043 ~ 60565934 (-)
G1192706 NA non-coding downstream 5226 60458722 ~ 60459300 (-)
G1192705 NA non-coding downstream 6063 60457600 ~ 60458463 (-)
G1192674 NA non-coding downstream 77853 60386458 ~ 60386673 (-)
G1192673 NA non-coding downstream 82958 60381341 ~ 60381568 (-)
G1192762 NA non-coding upstream 25902 60591836 ~ 60592136 (-)
G1192779 NA non-coding upstream 47221 60613155 ~ 60613473 (-)
G1192785 NA non-coding upstream 52724 60618658 ~ 60619208 (-)
G1192789 NA non-coding upstream 57358 60623292 ~ 60623592 (-)
G1192800 NA non-coding upstream 61835 60627769 ~ 60629455 (-)
G1192535 NA other downstream 149972 60219166 ~ 60314554 (-)
G1192519 NA other downstream 256256 60205782 ~ 60208270 (-)
LOC110516720 adcy9 other downstream 994235 59382826 ~ 59472065 (-)
G1192757 NA other upstream 6436 60572370 ~ 60575197 (-)
G1192815 NA other upstream 75741 60641675 ~ 60642185 (-)
G1193386 NA other upstream 709811 61275745 ~ 61277658 (-)
G1193568 NA other upstream 1018840 61584774 ~ 61585260 (-)
G1192754 NA non-coding upstream 101473 60563631 ~ 60564207 (-)

Expression


Co-expression Network