LOC110487058 (LOC106606437)


Basic Information

Item Value
gene id LOC110487058
gene name LOC106606437
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62118425 ~ 62160094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941818.1
ACTGGTATTTAGTCACGCGCaagcagtggtgtagtgtagtagtgacaGCTTGAGGGTTGTCGAGAGAAAAAAAGTGTAACCAGATATAGGTGGCTTCTGCTAAATGGATATCCTGCAATCCAACTGCTTATTTAGCTTCGTGTAGTTTGCCTAGTCATGCACATACTGTAACTAGGTCTGGAGCTGTTCAAACCTGCTGCTTCATATCTGTGCGAGCGTGCCTTGCAGAGCTGAGCGAAGCGCGAGCCGAAGCGACGGTTGTCGGAGCGCGATCAGACCAACAAGTGGTGTCGTTGGAAGCGGCTCTCGTGGCATGACTACTACAAACAAGGGAAACAAAGCCTTGAAGGTGAAGAAGGAGCCAGGGGAGAATGGGACCAGCCTCACGGACGACGAACTGGTGACCATGTCTGTCCGGGAGCTCAACGCTCACCTCCGCGGCCTCACCAAGGACGAAATCCTGCAGCTCAAGCAGCGGCGCCGCACCCTGAAAAACCGTGGCTACGCCGCCAGCTGCCGCGTCAAGCGGGTCACCCAGAAGGAGGAGCTAGAGAAGCAGAAGACAGCGCTGCAGCTGGAGGTGGACAAGCTGGCCACAGAGAACGCCACCATGAAGGTGGAGCTGGACTCGCTGCGCTCCAAGTACGAGGCCCTGCAGAGCTTCGCCAGGACTGTGGCGCGCAGCCCGGCCGTAGCCTTAACCCCAGGGGGTCGGGGGGTCATGGGGCCCCTGGTCCCTGGGAAGGTGGCCACGGCCACCAgcgtcatcaccatcatcaagtCCAAGACGGGAGCCAGGTCGTAGTATCGGGGCTGGGCTGCGTGGAGAGTTATCAGACTAATGAAACAACGTGTACTATAGTCAGTGTATCATCATGGAGCACAGGATTAGTTCCCTTGTCTGTCTTTTGGGCCCCCCCCCAGACCTTTGTACCAGCTAGTAACACTCTTTCAATTGGCCAGCAGCAGAGGCCACACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTG
>XM_036941817.1
cGTTGCAACATCATGCAAGAGATTGCACACATGAAAATATGATTTTTAGTGTCCTTCTGTTGATACTTCATGAATGAACCCACGTGACCAAACATGACGTCTGGCTCCGCGATACAAGGGAATGTAGAGAAAGGAATCAACAAGGAGAAACGAGCGGGATTTAAAACGCATGCTTGTCTGCCAGTCACAATTGTAGTAGCTACGTTCAAGTTGACCTTTTTATTACACAATAGACGACGTTAAGAACTATACAAAAACATCAAGTTTGACCAACAAGTGGTGTCGTTGGAAGCGGCTCTCGTGGCATGACTACTACAAACAAGGGAAACAAAGCCTTGAAGGTGAAGAAGGAGCCAGGGGAGAATGGGACCAGCCTCACGGACGACGAACTGGTGACCATGTCTGTCCGGGAGCTCAACGCTCACCTCCGCGGCCTCACCAAGGACGAAATCCTGCAGCTCAAGCAGCGGCGCCGCACCCTGAAAAACCGTGGCTACGCCGCCAGCTGCCGCGTCAAGCGGGTCACCCAGAAGGAGGAGCTAGAGAAGCAGAAGACAGCGCTGCAGCTGGAGGTGGACAAGCTGGCCACAGAGAACGCCACCATGAAGGTGGAGCTGGACTCGCTGCGCTCCAAGTACGAGGCCCTGCAGAGCTTCGCCAGGACTGTGGCGCGCAGCCCGGCCGTAGCCTTAACCCCAGGGGGTCGGGGGGTCATGGGGCCCCTGGTCCCTGGGAAGGTGGCCACGGCCACCAgcgtcatcaccatcatcaagtCCAAGACGGGAGCCAGGTCGTAGTATCGGGGCTGGGCTGCGTGGAGAGTTATCAGACTAATGAAACAACGTGTACTATAGTCAGTGTATCATCATGGAGCACAGGATTAGTTCCCTTGTCTGTCTTTTGGGCCCCCCCCCAGACCTTTGTACCAGCTAGTAACACTCTTTCAATTGGCCAGCAGCAGAGGCCACACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTG
>TU1362242
CGCCAGCTGCCGCGTCAAGCGGGTCACCCAGAAGGAGGAGCTAGAGAAGCAGAAGACAGCGCTGCAGCTGGAGGTGGACAAGCTGGCCACAGAGAACGCCACCATGAAGGTGGAGCTGGACTCGCTGCGCTCCAAGTACGAGGCCCTGCAGAGCTTCGCCAGGACTGTGGCGCGCAGCCCGGCCGTAGCCTTAACCCCAGGGGGTCGGGGGGTCATGGGGCCCCTGGTCCCTGGGAAGGTGGCCACGGCCACCAgcgtcatcaccatcatcaagtCCAAGACGGGAGCCAGGTCGTAGTATCGGGGCTGGGCTGCGTGGAGAGTTATCAGACTAATGAAACAACGTGTACTATAGTCAGTGTATCATCATGGAGCACAGGATTAGTTCCCTTGTCTGTCTTTTGGGCCCCCCCCCAGACCTTTGTACCAGCTAGTAACACTCTTTCAATTGGCCAGCAGCAGAGGCCACACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGTACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACCAACCCTTATCAGACAGCCTTTAGTAGTATAAACCATACTTCCATTCTGCCTTGGCACTGTACAAGCAGAAATACatacaccagaggaggctggtgggaggagctataggaggacgggctcattgtaatggctggaatggaataaatagaacagtatcaaacacatggaaaccacatgtttgactctgttccatgaattccattccagccattacaatgagcctccGCTGGACTATACACATCCTTCCTCTATAGTGTATTTTCACATACTGATTCCAAAAGGTTAAAGGTCACGTGAGTCCAGGAAGGTCGTACGACGTAGCCCAATCCATAATTGATGTCACTCCATCTGGTGTTGGAATTGGAGCTCTCGATGGAGTTGTGTGTTTTTGTACATGGTACTaagtgtttgagtgtttgtttgtttCCTACAGATGGCCCCTCTTTGAGTCTTTTCCGTCCCGACACAGGGTTGTGATGTGGAAATGCACTCTTTCATAACTACTAGCCACCAACAGTCTAGCCACACCCGGTTGGCATTATGCTTCACGTTCTTAGCCCTCTCTCTGTATCACAAGTGGAGAAAGAGTGATTGCCGTTAGCAACAAGCCTGGGCCTGTTAGAATGCACTGACTATGAGAAGAGGGAAATGCACTGTATGGTATTGATGTCTTGTGAGCAACCTTCAGTAAGGACTAGTAACTCACCCATCAGACCAGTTCATGTGATTTTAGttggtaaaaaaaaactaaacaggaAATTCTGTTAAGTTGAGCATTTATTTAGGTTCAGGTCAGCCTGTCACAGAATTTGACCAACAGGAGATGCAATAATACACACATGCACTGACAAATAGGAAGTTACATAGTGTAATGTAAGGGGAATGAGTCGATCTGATCTGAAAAATAATACGATAGCCTACTTGGTATGGGAtgataattattataataataataggtGTGATGTTGGAGTTGACAATGCCATTCCAGGATTACAAGATTGTTTCTTTCTCCAGTATCTGAGAAGCTGAATGTTTTTACAAGATCTTGTGATGATTATGTTTTGtggaggacatttttttttttatcctcaaaACATTTAAAACTCAATCTGTGCTCCATCGAGTAAATAAGTTGGAACTGTTTTGTAAATAAGTAGTTTTTTTTGTGCGTATGTAATAACATGTGAACTGGCTGGTCACATATTCCAAAATAATATTCACACAACGAGCTTTACTGTTTAGTTGTCAACGTGTGTGTATTCTAGAAGTCGTTGACTTAAGAGTTCTTGATTTGCATTGATGCATAGACGAGCATCTGCCGTTGTTTATAGAAACACTGGAAAAGAAAACTTCAGACAAAAAAACCTGTGATATCCTTTTTTGCAATTGTACCAAAAGTGGCTTACTATTGGAGGCTGGTAGCTTTTTCTAGTGACTAGGCGCGTACTGTGTGGGGTAGCGCGTGACGTGATGTGTATAAGTGACAGTTGGCAGTGTTGTTCACTGTATAGATGTCATGCCGTGGTATTTTCTATAGGAATCTGTAATAGAGATAATATAGCTGGTGTAAACATCATCTATTGTCTTCATCCATATTGGCATCTGTGATATCTCTTCCACTAGCTGTGATTCACAAATGTTTTTGTCATTGCGACGTTATTACTGTCGACGTTATTACTGTCGACCGAGCAGGCATAGGGGTAAGATAAGGCCCTTTTTAATTTTGAATCCCAGTTAAGTggccctcctcccctctcattgGTTTCAATTCCAGGGGAACATCACCTCTGATTTAGATTCAACTGTTATTGTCTTATCCATTTACCAAAGGGGACTACTTGCAATTTGCGAAGGGATAATAGCCTCACAATTGACTTTTTCAAAGACTAAGCAAAATCAAAATCTTTGACACTCTCTTACCGTGTAGCCAAGCATTGTAAAAGCTCTCCTTGAATAAATAACTTCTTCTCATTCTAACTATGAGAAGGGAGGCTCAGCATGC

Function

NR:

description
PREDICTED: transcription factor MafG-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941818.1 False 1027 mRNA 0.56 3 62120785 62159456
XM_036941817.1 False 1019 mRNA 0.53 3 62120785 62160094
TU1362242 True 2880 lncRNA 0.44 1 62118425 62121304

Neighbor

gene id symbol gene type direction distance location
LOC110487041 LOC105013038 coding downstream 22521 62067104 ~ 62098264 (-)
LOC110487033 LOC106606440 coding downstream 55992 62030676 ~ 62064793 (-)
LOC110487040 LOC106606439 coding downstream 95226 62019705 ~ 62025559 (-)
LOC110512085 LOC106601929 coding downstream 104080 61946652 ~ 62016705 (-)
LOC110486965 LOC100135781 coding downstream 570074 61546265 ~ 61550711 (-)
LOC118938342 LOC106606436 coding upstream 6155 62164135 ~ 62174550 (-)
LOC110485304 LOC106601897 coding upstream 15146 62175239 ~ 62180718 (-)
LOC110487059 notum coding upstream 23912 62184006 ~ 62205304 (-)
LOC110487063 LOC106606447 coding upstream 157557 62317651 ~ 62319367 (-)
LOC110487061 roa2 coding upstream 163937 62324031 ~ 62327032 (-)
G1194054 NA non-coding downstream 2576 62115767 ~ 62118209 (-)
G1194086 NA non-coding downstream 10568 62110002 ~ 62110217 (-)
G1194084 NA non-coding downstream 14051 62106398 ~ 62106734 (-)
G1194083 NA non-coding downstream 18872 62101621 ~ 62101913 (-)
G1194010 NA non-coding downstream 211009 61909381 ~ 61909776 (-)
G1194103 NA non-coding upstream 349 62160443 ~ 62160752 (-)
G1194105 NA non-coding upstream 1442 62161536 ~ 62161938 (-)
G1194120 NA non-coding upstream 73328 62233422 ~ 62233925 (-)
G1194121 NA non-coding upstream 75765 62235859 ~ 62236227 (-)
G1194074 NA other downstream 49950 62070109 ~ 62070835 (-)
G1193568 NA other downstream 535525 61584774 ~ 61585260 (-)
G1193386 NA other downstream 843127 61275745 ~ 61277658 (-)
LOC110538808 LOC106601873 other downstream 1112627 61005929 ~ 61026251 (-)
G1194306 LOC106600182 other upstream 295810 62455904 ~ 62499352 (-)
LOC118938346 LOC106606432 other upstream 309824 62469918 ~ 62474424 (-)
G1194521 NA other upstream 570860 62730954 ~ 62735710 (-)
LOC118938348 LOC106606427 other upstream 740549 62899607 ~ 62926919 (-)
G1194088 NA non-coding upstream 6071 62127375 ~ 62127604 (-)
G1194089 NA non-coding upstream 6847 62128151 ~ 62128433 (-)
G1194090 NA non-coding upstream 10913 62132217 ~ 62132443 (-)
G1194092 NA non-coding upstream 14747 62136051 ~ 62136273 (-)
G1194094 NA non-coding upstream 18017 62139321 ~ 62139722 (-)

Expression


Co-expression Network