RNA id: TU1362236


Basic Information

Item Value
RNA id TU1362236
length 2802
RNA type TUCP
GC content 0.41
exon number 2
gene id LOC118938342
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62164135 ~ 62174550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTGTTGGACTCGGAGCAGCACCCTGGCCAGCTGAAGGACAACGTTTGCTCCCCAGGGGGCGCCACCATTCACGCCCTGCACGTCATGGAGAGTGGGGGCTTCCGCGCCCTGCTCATCAACGCTGTGGAGGCCTCCTGCATTAGGACCAGGGAGCTCCAGTTCTTGGCTGACCAGGAGAAGATCTCTCCTGCGGCCATCAAGAAGACTACGCTGGACAAGGTTCTGCAGCAGCCAGGGGTGGGAACAGGGGTGGGCGTCCGGACGGGATCTGGGATCAGCCTGTTCAACAGCAGCAACCCCAGGCATAAGAAGTAATTGAACTGAGTGGCTCTGATCACAGAACAGTGGTGAATTCATTAGTGCATTGCAGACCAtatcaaaacattttgcaacaaaaaCAAGTTTCTTAgcggacaagttcaggtagttccTCCCTGTTTGGGTCTTTTTGCTTCCTAGTGATACGCCCCAGGAAGAGACCCTCAAAAGAATGAAATGCCGCTGAACATATTATTTAAACCCTAAAAGAGGTGTTATGGTTATAGCATGCCAGCTGAGAGGAGGGGCATAAATGGCAGCTTCATAAATGTGATGATAAACTTAAAGCAGCAATAGAGGATGTAGGGTGAAGGGACACTTCTCCTGCTCTCCTTCCATGTTCACTGACTAGAAACATCTGGACAGGTAAAAGCAAGTTCCTAATAGGCATTATGGCTTTCACCTGTCCAGTGTTGTCatatcagtgcagatgaaggagaaAAGCGGTAGGAGGTGACCGGGGGAAGAAGACGAACATAGACAGTTAAGATGGACCAACATGGTGATGAACAACAGGTCACAATTCCTTTACATTTTAGCCAttaagcagatgctcttatccagagcgacttacaggagcaattatggtcaagtgccttgctcaagggcacgtgaacagatttttcacctagtcggctcgggacTCGAACCAGGTATCTATCGGTTACTGTTGGAACGTTCTTAACctctaggttacctgccgcccactCCCTTTCAGTAGAAACACAGAGACATGTGGAGTTGGATGTCTTATGTGCTCAGCTATCTATAGCTTCTGTTTCATAGAATGTGTGCCTGCCTATATGTTCCGTTAGACAGATTGTTAGGTCATACATTATGTACAGTCTTACTGGAACTATTTTGGTCTGTTGCTAAACGGCAAAGGTCCCTGTTTTCTATTGTTGTTTATCTCTTCATTTTCTCGCTATTTTCTTTGCTTGATTGAGAGATTATATTACAGCTTTAGTATGTTAATCATTTTAGCCTGACTAAGGGAGGGAAAAACATTGTTTTTCAGTTTGTAGAAGGAGCAACACTGTTTACACACACTTGGAAACCACAACAAAATGGGAATTCTATTGAACTTTTCTTTATCCAGGTTTGTCTTGTTGATGTATATCTTCTTTAAAATAGACTTGTCAAAGATGGTAGCAGTCATTAATGTTACAAAAGTTACACACATATAGAAatctatctatactgaacaaaaatataaacggaacatgcaacaatttcaaagatattagagttacagttcatatgaggaaatcattGGATTATGGATTTTaaacgactgggaatacagatatgcatctgtttgaCAAAGATGCCTTAataaaaatgggcctcaggatctcatggTATTTTTGTTTGTTCacattgccatcgataaaatgcaattgtgtttgttgttcgtagtttatgcctacccataccataaccagggtcgccaccatggggcactgttcACAATGATGACATCAGCAAGCCACTCGCCCACATGaagccatacacatggtctgcagttgtgaggcaggttggatgtactgccaaattctctaaaacgacagagaaattaacattaaattctctggcaacagctctggtgcagattcctgcagtcagcataccaatttgCAGCTCTCTCAAACTTAacctctgtggcattgtgttatgtgacaattacatggccttttgtccccagcacaaggtacacctgtataacgatcatgctgtttaatcagcttctctacatgtcacacctgtcaggtggagggattaccttggcaaaggagaaacgctcactaacagtgatgtaaacaaatatttgcacaacatttgagagaaataagcatttttgtgcatatggagcaTTTCTGTGATTTTATTTTTCAGTTCatggaacactttacatgctgcttttatatttctgttcagtgtagatgaatcTCCTTTACAAGATAGACttgctacacacaaacacatctccTTTGTGTGAGAGACTTGTTCAAGATGGTAGCAATCATTGTTACACATACACAGtaggtagactacagtattttACATAAGACATTTTACGTTCAGTCCTTTTACATATTTGACTGGCATATTACTGTTTACAAGGTGGAAGTGGTACTATTAGGCCTATACAAAGTGAAATGCATGAATATGCTGAACCTGTAAGAGTTTATATATTTTGTGAACAAAATATGTAAAGTCTAGCTAGATCTGTTTTATTAAACGTTATTTCCAAAACTTTCATGATTAATTAAATTATTTAAACTATTTTTCTGTAGCCTGTATGCATATATGGGTGATTTTGCAAATACTGGCCTTTTTGTGTCTCAGGGTTAGATTAAGATAAAATgttaatttagattttttttcttcacatcgAGGCTATAACCTAAACTTTTTCTTTCAGctttcaatattttattttattttataaagcaTTTCATGTCTGGAATTCACTGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1362293 lncRNA downstream 2197 62161536 ~ 62161938 (-) True G1194105
TU1362291 lncRNA downstream 3383 62160443 ~ 62160752 (-) True G1194103
TU1362287 lncRNA downstream 13199 62150679 ~ 62150936 (-) True G1194100
TU1362285 lncRNA downstream 20777 62143112 ~ 62143358 (-) True G1194098
TU1362284 lncRNA downstream 21338 62142556 ~ 62142797 (-) True G1194097
TU1362294 lncRNA upstream 7513 62175239 ~ 62175511 (-) True LOC110485304
TU1362308 lncRNA upstream 65696 62233422 ~ 62233925 (-) True G1194120
TU1362309 lncRNA upstream 68133 62235859 ~ 62236227 (-) True G1194121
TU1362484 lncRNA upstream 150094 62317820 ~ 62319291 (-) True LOC110487063
TU1362507 lncRNA upstream 185158 62352884 ~ 62353133 (-) True G1194276
XM_036941817.1 mRNA downstream 4041 62120785 ~ 62160094 (-) False LOC110487058
XM_036941818.1 mRNA downstream 4679 62120785 ~ 62159456 (-) False LOC110487058
XM_036941815.1 mRNA downstream 65871 62067104 ~ 62098264 (-) False LOC110487041
XR_005035628.1 mRNA downstream 65871 62067104 ~ 62098264 (-) False LOC110487041
XR_005035629.1 mRNA downstream 65871 62067104 ~ 62098264 (-) True LOC110487041
XM_036941820.1 mRNA upstream 7514 62175240 ~ 62180718 (-) False LOC110485304
XM_036941821.1 mRNA upstream 16280 62184006 ~ 62205304 (-) True LOC110487059
XM_021558970.2 mRNA upstream 149925 62317651 ~ 62319360 (-) False LOC110487063
XR_005035630.1 mRNA upstream 149925 62317651 ~ 62319367 (-) False LOC110487063
XM_036942628.1 mRNA upstream 156305 62324031 ~ 62327032 (-) True LOC110487061
TU1362261 other downstream 93300 62070109 ~ 62070835 (-) True G1194074
TU1362171 other downstream 147535 62007087 ~ 62016600 (-) False LOC110512085
TU1362172 other downstream 147535 62007087 ~ 62016600 (-) True LOC110512085
TU1361673 other downstream 578875 61584774 ~ 61585260 (-) True G1193568
TU1361473 other downstream 886477 61275745 ~ 61277658 (-) True G1193386
TU1362238 other upstream 684 62168410 ~ 62174500 (-) False LOC118938342
TU1362237 other upstream 4560 62172286 ~ 62174500 (-) True LOC118938342
TU1362548 other upstream 288178 62455904 ~ 62459898 (-) False G1194306
TU1362491 other upstream 302192 62469918 ~ 62473962 (-) True LOC118938346
TU1362829 other upstream 563228 62730954 ~ 62735710 (-) False G1194521

Expression Profile