RNA id: TU1362829


Basic Information

Item Value
RNA id TU1362829
length 4250
RNA type TUCP
GC content 0.43
exon number 3
gene id G1194521
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62730954 ~ 62735710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTGTCTTtactttatttcagcttttgattACATGGCAATGATAGAAACCTCAAATCAAACACTacgaaacaaaaacaaaatgggCTAATAATAACATCATATTGCTACATTAAAACTCAAGAAATAACATGAAAAAAACAGATAAATCCACTATACATTTAAGTATATACAACCTTGATAAATAACCAGTAACCAAATTCTGTCTAGATTTCTGATTGTTTTATTTGCTGTTTCCTTGTCATCTCTATAAGCAGTCTGCTGAGACGAGGCTAGGAGAAACTAAATCAGGGAAACAGGGCTATGTGCTATGGAAGCAGATTCTTggcacaacaaaaaaatatattgaaataAAACTAATACTGATGAATAATTTGTCAATATCGATGCTTCTTTATTTTTGTCATGAATGTGCCTCCATAAATGAGGAAAACCATGAATAACAGACAGCCAGGCACTGATCACAGAGTAGAGAGAAGGTTTTATGCACAAATAAAGCTGCATTTGCTGGATGCAATTGTGATGCCATGTACGATTCCACTTTAAAAACAAATCATGTATACCAAGGCTGACTTAAGAGGTCTTGCACTGGGAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATAGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGCGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATAGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCACCACTATGGAGCATAGTGGTACATTCCTGATCAGAGTAGTTCCACCACTATGGAGCATAGTGGTACATTCCTGATCAACAGCTGTGTTTTGTCTCAAATCCAATCCAAACATTCCAGGGTGTTCCAATTAGGAACGGACAGTCCACTGCCCAGGCTTGGTTTGTCCTATGGGTATTATTACTGTATTCCTAGGCGTTGTTTGTCTTACAGGTATTTTTACTGTATTCCTAGGCGTTGTTTGTCTTACAGGTATTTTTACTGTATTCCTAGGCGTTGTTTGTCTTACAGGTATTATTACTGTATTCCTAGGCGTTGTTTGTCTTACAGGTATTTTTACTGTATTCCTAGGCGTTGTTTGTCTTACAGGTATTTTTACTGTATTCCTAGGCGTTGTTTGTCTTACAGGTATTTTTACTGTATTCCTAGGCGTTGTTTGTCTTACAGgtattattactgtattattGTACAGTAAAGGATGCAACAGCTATTTGAAATAAGTGAGAGAGCTATTCCAATGCTTTAGGATGGTGAGTGTGGGTTGAAGAAGGTGAAACCTGGATTGTTCTAGCATTTTATACTGTGTCTACAAATGAGGAAGGACATTTAAGAGTGCTCCTATGGGATAAAAAGATAGGCGAGGGCATCTTTGTTGCATTTAAGAGGTAAAAATAACCAGCTCCACTTAGAAAGAGCATCTTTGTAAATTAGCTAACCAGCAGCATGATAGGACACATTTCATTGGGAGTGTCAAGTAGACAATGAATAGGAAATAGGATAccgggaaagggggatacctagtcatttgtacACCATAAAATGTGATTATTGTTCCATTATCTTGTGTGTATGTTACATTTACAGAAagtgagcgagagaaagagagaggagaaatatgagaggaaaaagagagatgcGTGAAAgacaaggaaagagagaagagaagagaaaagaggacAGAATAGAGGGACAGGGCAGATGAGGACAATACCTCAATTTCCAGACACCTCAAAACTCTGTGAGCCCCTGAGTTGTGGCCCGTACTGactgacagatacacagacactcTCGCTGACAGACTCTCTAGTCCCCTGAATGGACCTCCAAGTCCAACAGGAAATGAAGTGCGATAGCTGAGCCCTCGCCCATAATCCCACACTAAGACCATGTGCAAACCACTCATCAGGGAAGTGTACATTAGTGCACACAATGGAAAACGAAAATGAACACATCTCATGGGACAAGTCAAGTTAGTCCCCACCTTTTTCAGTCCCCGTTCTTCCGTttcggtgcctaatgaacacgacacTGTGTTTAACAACCGTGTTTTGGAGTGTGTTTTCACAACAAAGTTAGCACGTCTAAACTGCTGTCAAACATCTGGGGACACATATGAACAACGAAGAGTCGGGGGCAAACAGCTGTGGAGGAATACAGCTGTCAAAGCTCAATTATTGTCACAGATGATGTGCATATAAACAGGCAAATGTCATGGCAAACATGTTCATTTTAAAAACTCATTGTAAATGAACTCTTCCTTCAGTTACTGAGTGACAGTTTGGACAGAGTCTTAAGTTTATCCTGATACAGACCGATCCAGAGCCAAGTAACAATCTCCTGAGAGGCAACTTTGACAGAAAGACTTCAAAAAAGTTTATTCTCGTTTCAAAAAAATCGTCGGTTGGCAATATAACCCATTCCCCCTCAGTCTTTCTAAAAACCTTATCAAAAAGTAAAACTGAAACCCAAAAGCTCAAGATTCTGagggaaatatatacagtagtaAGCTCTACAAACACACGTTGCCCATCATATTAACGTATACAGAAAAGCATCTCACCTTTCCTTTTGAAAGCTAGTAAGAATATTTTGGTTGGGATGCCACAACAACTCCATCAGACCTGCTGAGTttagatgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgttttgtgtgtatgaCTTCAGTGTACGACATTGGTGTGTGTGACAGTAtgggtgtgtgtgcacatgtctTTTTGAGGGAGGGGATCCATTTTACCCAGAAAGCGATAGACCCCTTCCTCCCAAAATACACACAGCAAAGAGtttagagagagacggagagcatTCAGCCACAGAGACAGGagcagggggaagaggaggagggggaggcaggaCAGCATGCACCCTGTCCTGTTGGTCGGTCTGTGGAATCCCAAAGCTAGAGCCTATCCCAGAGAAATGCTGACCGAGGCAAGAGGCCCCAACCCCCAGTCTGCAGCCCCTGCCCCAACCCCATCCCCAGGCCTGAAAACACAAGTCTCAGGGTCTCAGCAGGATGGGTCCAAACTCTCTCAacggggggaagaggaggagtccTGAGCAGCTCTAGTGTCTCTTCATGGAGGAGACCTTCTTCTTGCGGGTGGCCAGCATCTCATAGAAGGGATCCCTGCTGATGGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1362846 lncRNA downstream 2933 62726022 ~ 62728021 (-) False G1194523
TU1362849 lncRNA downstream 2933 62726022 ~ 62728021 (-) True G1194523
TU1362883 lncRNA downstream 19398 62710999 ~ 62711556 (-) True G1194551
TU1362876 lncRNA downstream 39303 62691254 ~ 62691651 (-) True G1194544
TU1362869 lncRNA downstream 55500 62674861 ~ 62675454 (-) True G1194538
TU1362874 lncRNA upstream 40470 62776180 ~ 62778733 (-) True G1194543
TU1362925 lncRNA upstream 87528 62823238 ~ 62823449 (-) True G1194591
TU1362955 lncRNA upstream 139634 62875344 ~ 62875558 (-) True G1194616
TU1362959 lncRNA upstream 144020 62879730 ~ 62880349 (-) True G1194620
TU1362960 lncRNA upstream 146785 62882495 ~ 62882707 (-) True G1194621
XM_036941838.1 mRNA downstream 218525 62506293 ~ 62512429 (-) True LOC110487064
XM_036941833.1 mRNA downstream 231764 62495039 ~ 62499190 (-) True LOC118938345
XM_036941835.1 mRNA downstream 256530 62470465 ~ 62474424 (-) False LOC118938346
XM_036941834.1 mRNA downstream 270959 62455727 ~ 62459995 (-) True LOC118936370
XM_036941836.1 mRNA downstream 301384 62422481 ~ 62429570 (-) True LOC110487076
XM_036941853.1 mRNA upstream 163897 62899607 ~ 62926919 (-) False LOC118938348
XM_021559074.2 mRNA upstream 201458 62937168 ~ 62957406 (-) True LOC110487151
XM_036941863.1 mRNA upstream 296702 63032412 ~ 63162700 (-) False LOC110486089
XM_036941856.1 mRNA upstream 296702 63032412 ~ 63218814 (-) False LOC110486089
XM_036941857.1 mRNA upstream 296702 63032412 ~ 63218814 (-) False LOC110486089
TU1362491 other downstream 256992 62469918 ~ 62473962 (-) True LOC118938346
TU1362548 other downstream 271056 62455904 ~ 62459898 (-) False G1194306
TU1362238 other downstream 556454 62168410 ~ 62174500 (-) False LOC118938342
TU1362237 other downstream 556454 62172286 ~ 62174500 (-) True LOC118938342
TU1362236 other downstream 563228 62164135 ~ 62167726 (-) False LOC118938342
TU1363008 other upstream 164933 62900643 ~ 62926816 (-) True LOC118938348
TU1363034 other upstream 200076 62935786 ~ 62937073 (-) True G1194684
TU1363300 other upstream 306296 63042006 ~ 63055361 (-) False LOC110486089
TU1363301 other upstream 306296 63042006 ~ 63055361 (-) False LOC110486089
TU1363302 other upstream 336605 63072315 ~ 63081573 (-) True LOC110486089

Expression Profile