RNA id: XM_036941836.1


Basic Information

Item Value
RNA id XM_036941836.1
length 884
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110487076
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62422481 ~ 62429570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGGGGGAGGAGCTCACAGCCTGCAATAAATAGCGGATGATTACGTTGAGGGGAAAATACTTTTAAGAGTTATCCGTCGGTCTGGGAACAGTCCGAAGGGAAATACGTTATTTTGTCATTTACGCCTCACACCTTTACTCGGCTCCTTTTGTGATATTTGGGTAACCGTAATTAGTTTCCAAATGACGCGGTATGTAAGCAGTTGTTTCATTACTCTGTTCGTGCTGTTCCTGTGGCGGGTCGAAGACATCGCAGATGCGTGCAAATGCTCCCCTCCGCATCCCCAAAAGGCTTTTTGCGATGCAGAAATCGTGATCAGGGCGAAGGTGGTTGGAAAGAAAGCGGTGTCTAACGCCATCAAGTATGACATCCAACAGATCAAGATGTTTAAATGCCCAGACCAGGTTATCCACGCCATCTTCACTGCACCATCCCCAGCTGCATGTGGTGTGACTCTGGACCTCAACAAGGAGTATCTCTTCACAGgcAAGCTGGAGACTGGAAGGATGTATGTAACACTGTGTGGCTATAATCCGCCCTGGGAGGACTTGAGTGCTGCACAAAAGAACAGCTTGACTCACCGCTACCAAAGCGGCTGTGATTGCAAGaTCATCCACTGCACTTCGCTCCCCTGTCCGATCAGCACCACAGATGCATGTCTGTGGATGGACTGGGGGACAAACAATAGCCAAAACCTTGCCTGTATCAAGAGTAATGGTTCTTGTGCTTGGAAGTAGTTCCTAGATATTGGGGACTCTACAGGCTATACTCTACAGGCCATCCGCTTAGTGACTCCAGATGACAAAGCTGCCAATGTGTAGTTTTAAATTAACCAACATGTCTTGCTGGTCACTTCTTGTaaaataaacaaatcaaatgCAG

Function

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0052547 regulation of peptidase activity biological_process

KEGG:

id description
K16866 TIMP3; metalloproteinase inhibitor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1362522 lncRNA downstream 20878 62397025 ~ 62401603 (-) False G1194284
TU1362520 lncRNA downstream 20878 62398253 ~ 62401603 (-) True G1194284
TU1362508 lncRNA downstream 68924 62353358 ~ 62353557 (-) True G1194277
TU1362507 lncRNA downstream 69348 62352884 ~ 62353133 (-) True G1194276
TU1362484 lncRNA downstream 103190 62317820 ~ 62319291 (-) True LOC110487063
TU1362549 lncRNA upstream 26334 62455904 ~ 62499352 (-) False G1194306
TU1362550 lncRNA upstream 65480 62495050 ~ 62499352 (-) True G1194306
TU1362580 lncRNA upstream 97567 62527137 ~ 62527582 (-) True G1194334
TU1362495 lncRNA upstream 135177 62564747 ~ 62567053 (-) True G1194264
TU1362628 lncRNA upstream 140375 62569945 ~ 62580456 (-) True G1194367
XM_036941822.1 mRNA downstream 60894 62330233 ~ 62361587 (-) True LOC110485307
XM_036941824.1 mRNA downstream 64679 62330233 ~ 62357802 (-) False LOC110485307
XM_036942628.1 mRNA downstream 95449 62324031 ~ 62327032 (-) True LOC110487061
XR_005035630.1 mRNA downstream 103114 62317651 ~ 62319367 (-) False LOC110487063
XM_021558970.2 mRNA downstream 103121 62317651 ~ 62319360 (-) False LOC110487063
XM_036941834.1 mRNA upstream 26157 62455727 ~ 62459995 (-) True LOC118936370
XM_036941835.1 mRNA upstream 40895 62470465 ~ 62474424 (-) False LOC118938346
XM_036941833.1 mRNA upstream 65469 62495039 ~ 62499190 (-) True LOC118938345
XM_036941838.1 mRNA upstream 76723 62506293 ~ 62512429 (-) True LOC110487064
XM_036941853.1 mRNA upstream 470037 62899607 ~ 62926919 (-) False LOC118938348
TU1362238 other downstream 247981 62168410 ~ 62174500 (-) False LOC118938342
TU1362237 other downstream 247981 62172286 ~ 62174500 (-) True LOC118938342
TU1362236 other downstream 254755 62164135 ~ 62167726 (-) False LOC118938342
TU1362261 other downstream 351646 62070109 ~ 62070835 (-) True G1194074
TU1362172 other downstream 405881 62007087 ~ 62016600 (-) True LOC110512085
TU1362548 other upstream 26334 62455904 ~ 62459898 (-) False G1194306
TU1362491 other upstream 40348 62469918 ~ 62473962 (-) True LOC118938346
TU1362829 other upstream 301384 62730954 ~ 62735710 (-) False G1194521
TU1362838 other upstream 301384 62730954 ~ 62735710 (-) False G1194521
TU1363008 other upstream 471073 62900643 ~ 62926816 (-) True LOC118938348

Expression Profile