RNA id: TU1362495


Basic Information

Item Value
RNA id TU1362495
length 2141
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1194264
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62564747 ~ 62567053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTATCTAAACTTTTATTTGTATCGTCTGTCCAATGTCTGAAGATACCATACAGTCCCAATGACACAAGGAGTCATATGCATGCAAAAACTTCAGTTGCTTCTCCACAGTCTCATGTGGACCTAGCACGAGTCGTCCAATTTCATTCTACTTTTCTGCTAGTATTACATAAAGAGACACTTACTAATACAGAATTGATACCATGTACATTACAGGAGAATTTCATATTTTTTACGTGGATATACAAGTTTGGAGTTATATGATACAGTATCCCTGTTCTGTCGGCAAATGATTGATAAGTTATTATAGCAGTACAACATTGTGTTCAGTTTTTACTGAAGTAATACAACTGTAATTGTAGATGAAGCTCTTGTAGAGGACAGGTCATGGTGAAGCAGAGCACCGGTAACCAACAAGCTACTCTGACAGGCTGGGTTCAAACCCAGGTGTCCAATGCACCACAAGACTATGTTAGCCCGCTAAACTAAAACCTTGGCAATAGCTTGGGGAGCTAATACAAGTCTTCAGTGGAGATTATGGCATGCTACAATATGGGTCTGATCTGTTTTGTGAAGTAACTACGTGTACTGTAAAGTGAACAGAAAACTGTGCCAAACATATTCCCTTTACCCCAATCACAATTCGAGAATATTCACACACAAAaaagtttgtgttttttttacaaagaacACATGTAATTTGCAAAAAGGTATAACGAATCTCCCAATTTCTCTACTGAAATATGTTCTTACACAGAGGCATTACACCAAGAGACAAAACAACCAAAGCAAAATATTATAATTATACCAGAACTAAACAAATATAAAATACGTACATAACATAAAAATGGAAGATTCAATGACCTTGTTTTCAGACTGTACTGTGTGGCATGTGCAGTGTAGGTATATAAACATAGCAGCCAGGTTTACAGTCTCCGTTGCAGAGAAATCAACAAAGGGTTTTGTCCATAGTAAGACCTTAGATAAgccagttaatattataataggaaTGATGAAGCACTTCTAGTTATACGACACTGCAcctatttttttttagaccactCCTGTCTAGTACATTAAAATTAACATAATATTTATCCCACCGAAGAATATACACCAAGAATAATATTATCAGACTTATGAAGCAAGGAAGAAAGAATCTGAGCagcggagTCATGTTTAATTTGGCCAATGACATTACAAAACTGAAGCCCTGGTTTCGACCTAAACTACTTCAGGGCTACGTTCAGGAGGCTAGTGTTGAATGTTGTAGGCAAAGGTtgaatgttgcagatagaaatgccatgAATAGAGCTTACATGATTCCTTCCTTTATGTCAGAGAAACATATTTGTTCTTCATGTATTTAAACATACGATCTGAACGTTCTACAATATTGTGCCCAGCTGAACATTCCCCAGGCTTTAGGATGGTATTGTTTAGGAATAATGTTCTATTTAGAAACACGACCACATCGGCCAACAACACTTTGATATCACCCTTTTGGGTTTCAATAACACCTTTGGTTCCAGTTTAAAAACGAGCGACAAATGAACGGCACAATATCAATTAATACTTGAAGCTCTATATTTGAtttgtagtttatttttattgcACTTGTACAAGAAGTGACCAGTAAGCGCTTTTAGAGCGGTGAGGGGGTCAGAAAGTGCTGTTTTCTCCAGATTGTTGCTCTCTTGCATACGGACTATTTCCTGCAACCTGTCACCTGACCTCTCTATGTGACATCACAACTGGACAAGTCAATATGGGTCTTGTAATTCATTGATATTAACTACTTCACTGATTCATTTAATCATAATTATTTGGATTTGTAGCTTTGTGTACTTTTGCTTTTCCATGTATTAATTGCAGACATCTTTAGTCACTCTGAACAGTAGGTGGATGGCCTGAAGAGTTTAGGGGTCTTCAATATCCAGGAACTCCTTCTTGGGTGGTGCTATCCCCCTGTACCAGGCACAGGACCCATCGCTCCTATTGATACAGGCAAAGTGTTGGGCCTGGGGACCGCTGTGGCTCTTTTCCATCACCCAGTCCGTCCACAGACACTCCTCTGGGGCGCTGATCGTACAGGGGATGGAAGTGCAGCGGATGATCTGTGGATcggagcagaaagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1362580 lncRNA downstream 37165 62527137 ~ 62527582 (-) True G1194334
TU1362549 lncRNA downstream 65395 62455904 ~ 62499352 (-) False G1194306
TU1362550 lncRNA downstream 65395 62495050 ~ 62499352 (-) True G1194306
TU1362522 lncRNA downstream 163144 62397025 ~ 62401603 (-) False G1194284
TU1362520 lncRNA downstream 163144 62398253 ~ 62401603 (-) True G1194284
TU1362628 lncRNA upstream 2892 62569945 ~ 62580456 (-) True G1194367
TU1362648 lncRNA upstream 23589 62590642 ~ 62590922 (-) True G1194385
TU1362661 lncRNA upstream 33469 62600522 ~ 62600793 (-) True G1194395
TU1362674 lncRNA upstream 35884 62602937 ~ 62605617 (-) True G1194397
TU1362676 lncRNA upstream 38787 62605840 ~ 62606190 (-) True G1194398
XM_036941838.1 mRNA downstream 52318 62506293 ~ 62512429 (-) True LOC110487064
XM_036941833.1 mRNA downstream 65557 62495039 ~ 62499190 (-) True LOC118938345
XM_036941835.1 mRNA downstream 90323 62470465 ~ 62474424 (-) False LOC118938346
XM_036941834.1 mRNA downstream 104752 62455727 ~ 62459995 (-) True LOC118936370
XM_036941836.1 mRNA downstream 135177 62422481 ~ 62429570 (-) True LOC110487076
XM_036941853.1 mRNA upstream 332554 62899607 ~ 62926919 (-) False LOC118938348
XM_021559074.2 mRNA upstream 370115 62937168 ~ 62957406 (-) True LOC110487151
XM_036941863.1 mRNA upstream 465359 63032412 ~ 63162700 (-) False LOC110486089
XM_036941856.1 mRNA upstream 465359 63032412 ~ 63218814 (-) False LOC110486089
XM_036941857.1 mRNA upstream 465359 63032412 ~ 63218814 (-) False LOC110486089
TU1362491 other downstream 90785 62469918 ~ 62473962 (-) True LOC118938346
TU1362548 other downstream 104849 62455904 ~ 62459898 (-) False G1194306
TU1362238 other downstream 390247 62168410 ~ 62174500 (-) False LOC118938342
TU1362237 other downstream 390247 62172286 ~ 62174500 (-) True LOC118938342
TU1362236 other downstream 397021 62164135 ~ 62167726 (-) False LOC118938342
TU1362829 other upstream 163901 62730954 ~ 62735710 (-) False G1194521
TU1362838 other upstream 163901 62730954 ~ 62735710 (-) False G1194521
TU1363008 other upstream 333590 62900643 ~ 62926816 (-) True LOC118938348
TU1363034 other upstream 368733 62935786 ~ 62937073 (-) True G1194684
TU1363300 other upstream 474953 63042006 ~ 63055361 (-) False LOC110486089

Expression Profile