LOC110485277 (LOC106602060)


Basic Information

Item Value
gene id LOC110485277
gene name LOC106602060
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63495359 ~ 63509387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941876.1
ACTCATCACTTccttggattcccctccagacctgtttaccctgtcccaacccagctcactccaacctcagcctccaTAACTGGTTTCCTACAACTCATCACTTccttggattcccctccagacctgtttaccctgtcccaacccagctcactccaacctcagcctccaTAACTGGTTTCCTACAACTCATCCAGGCTTTGCTGGATCTGCACTTCATCTCTAttaagcattaagaaggaaagaaattcaacagattaacctttaacaaggcacacctgttaattgaaattccagGAGGACGTGCAGGGATGAGACCCATGGACCACAGTGTGCTGAAATGTTGCCTCTTCTCCCTATTCTTGCTAACAGTATCTGCATCAGGCACTCTATCCAACTCAGCAGTTCCTACTATCCAACCACTATCTAATACAGCCAGTGCCTCCCAACCAGCCAACACAGCCACTTCATCCAGTGCAACGACACCCTCCTGTACAACACGTCGATGTCTGGCCAGCATGCTGATTGCGAAAGAAGCTCGGAGTCCGCCACAGTCTCCACGGTGCATCTCAATTATCCGTGTGCCGTCAATCGTGTACGAAACTCTGTCTGTCGATACAAAAAACCTCCGCTTCGAGAGTCGTCTGGAAGTCCCGCTGTCTTGGGAAGACCCTGATTTATCATGGAACACATCAGTCTATCATCATGATGTGGTGGTCCTGCCTGTCAGCAAAATCTGGACTCCTGAACTCCATGTGACTAATGGAGTGCAAACAACGATGAAGCACGGCAACAAGGATTTGCTGGTGCACAGCAACGGGACTATAGAGCACATGGTCATCATGAACACTGTGGTGGGCTGTGAGGTCAATCTGTACAACTACCCCTTCGCTTCAGATTTCTGTGCCATCGCCCTTAATGTGTGGGCAATTAGTGGATGTGGCATGTTCCTGGACTTTGGGAATGTGAGCAAAACTAGTGCAAACCGTGGGGACTGGCTAACCGAGGAGGTGGAACTCAATGCTAAAGGAGGCAGAGATGATCGCAactatctatggGTGTCGCTGAAAATGCGGTCTGAAAACCCGTTTCTGTCCCTGGTCCTGCCCAGTATACTAATCATCTTGGCTGATGTGGGCAGCTTCTCCCTGCCGCTGGGAGAGAGCAAGCGCATCCCCTTCAAGGTTAAACTGGTTCTCAGCTTCATCATGTTCCTCAACATCCTCAAGGACCTTCTGCCTGGAGGAGGCCAGTGCAGCCCCATCATCCGAAAGCACTTCTGTTTCTGTTTGGTCATCCTGGTGTTGAGCACGTTGCAGTCTATGGTGCTCACACGCCTGGCTAAGTGTGGCACTCTCTGGCCCTGCAGCCTCTCCAAGTCCAAAGACTCACTGCTTAAAGACACAGGCAATGAAGAGGCCTCAGAGGAAGAGAAGAATACAGCCCTCCAGAAGGTGGTGAAGTTTCTCAACAAAATGGCTGCACAAGACCACAAAAATGCTATACACCATCGCCTTGCCAACAAAGTGGACTTGATCTGTTTCTGTATCTATCTCACCGTCCTCATCGTTTATGCAGTCGtcattttatttttctcctttggtTCTCGATGTGAGATCAACCATTTAGAATTCTGGCATTAAATTCTTTATTTGCGTTTAACAATGATATGTAAATAAACATAAAGTATGTGTGTATTCTTCAGTAGAGATTTAACAATATTTATTTCAATATCTTTGAAACACCTCTGCATATCTATCCATTTTCCATTCTTCCTGTGCCATCCAAATTCCTGCATAGCCTACTGGTCAACGTACTGTAGTCAAAAATAATGCGAACGATGATGGTCAGCGATGAAGATGCGTCTAGCAACTTGCTGGTGCCGAGGCCCAGCATGATGACTCAATCACGATTTATGATATTGTCTGAATGACAGACCATCTGGGGGCTATTACAGGGGTCAAACACCTTATCTGTGGCAATCTCGATGAAAACACATTCCCATGGAAGTCCTGGGGGTCACTGACGCCAGGATAAGATGTAAAGACGGATGAAACTTGAATCGACTAAATGAATGTTACTGTGTGAATGAAATTGTCATGTTTGGATTATTTCAAGAGTTCATAAAGGGCTATGTATTTTTATATGTTTTATAATACTATGCTATGTATTTTTCTACGCTTTTAAGACTTAGGATATTCTATATTCTCTTTATCGTGAAGATTACTGGTATGTACCATTTGCTAATTGTATTCTTATTGCGTAACTGTAATAAATCGGATTACTTTCAAATA
>TU1363571
TGCATCAGGCACTCTATCCAACTCAGCAGTTCCTACTATCCAACCACTATCTAATACAGCCAGTGCCTCCCAACCAGCCAACACAGCCACTTCATCCAGTGCAACGACACCCTCCTGTACAACACGTCGATGTCTGGCCAGCATGCTGATTGCGAAAGAAGCTCGGAGTCCGCCACAGTCTCCACGGTGCATCTCAATTATCCGTGTGCCGTCAATCGTGTACGAAACTCTGTCTGTCGATACAAAAAACCTCCGCTTCGAGAGTCGTCTGGAAGTCCCGCTGTCTTGGGAAGACCCTGATTTATCATGGAACACATCAGTCTATCATCATGATGTGGTGGTCCTGCCTGTCAGCAAAATCTGGACTCCTGAACTCCATGTGACTAATGGAGTGCAAACAACGATGAAGCACGGCAACAAGGATTTGCTGGTGCACAGCAACGGGACTATAGAGCACATGGTCATCATGAACACTGTGGTGGGCTGTGAGGTCAATCTGTACAACTACCCCTTCGCTTCAGATTTCTGTGCCATCGCCCTTAATGTGTGGGCAATTAGTGGATGTGGCATGTTCCTGGACTTTGGGAATGTGAGCAAAACTAGTGCAAACCGTGGGGACTGGCTAACCGAGGAGGTGGAACTCAATGCTAAAGGAGGCAGAGATGATCGCAactatctatggGTGTCGCTGAAAATGCGGTCTGAAAACCCGTTTCTGTCCCTGGTCCTGCCCAGTATACTAATCATCTTGGCTGATGTGGGCAGCTTCTCCCTGCCGCTGGGAGAGAGCAAGCGCATCCCCTTCAAGGTTAAACTGGTTCTCAGCTTCATCATGTTCCTCAACATCCTCAAGGACCTTCTGCCTGGAGGAGGCCAGTGCAGCCCCATCATCCGAAAGCACTTCTGTTTCTGTTTGGTCATCCTGGTGTTGAGCACGTTGCAGTCTATGGTGCTCACACGCCTGGCTAAGTGTG

Function

NR:

description
PREDICTED: zinc-activated ligand-gated ion channel-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941876.1 False 2291 mRNA 0.45 10 63495359 63509387
TU1363571 True 974 TUCP 0.51 7 63497098 63505524

Neighbor

gene id symbol gene type direction distance location
LOC110487426 LOC106606390 coding downstream 33725 63448495 ~ 63461634 (-)
LOC110485274 LOC106606392 coding downstream 73861 63419349 ~ 63421498 (-)
LOC110487424 otop2 coding downstream 96162 63369692 ~ 63399197 (-)
LOC110487088 otop2 coding downstream 133577 63356485 ~ 63361782 (-)
LOC110517310 LOC106601910 coding downstream 186215 63307181 ~ 63309144 (-)
LOC110487439 mkk6a coding upstream 92350 63601361 ~ 63626291 (-)
LOC110487455 LOC106601935 coding upstream 118120 63627507 ~ 63633142 (-)
trub1 trub1 coding upstream 189860 63699247 ~ 63700715 (-)
LOC110487444 LOC106601894 coding upstream 204995 63714382 ~ 63721873 (-)
LOC118938350 NA coding upstream 230894 63740281 ~ 63763190 (-)
G1195075 NA non-coding downstream 6026 63488844 ~ 63489333 (-)
G1195070 NA non-coding downstream 16794 63478162 ~ 63478565 (-)
G1195069 LOC106606397 non-coding downstream 22689 63471983 ~ 63472670 (-)
G1195058 NA non-coding downstream 51101 63443641 ~ 63444258 (-)
G1195484 NA non-coding upstream 67726 63577113 ~ 63577337 (-)
G1195486 NA non-coding upstream 71624 63581011 ~ 63581400 (-)
G1195487 NA non-coding upstream 77743 63587130 ~ 63587640 (-)
G1195489 NA non-coding upstream 96519 63605906 ~ 63606545 (-)
G1194933 NA other downstream 357637 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 413786 63032412 ~ 63218815 (-)
G1194684 NA other downstream 558286 62935786 ~ 62937073 (-)
LOC118938348 LOC106606427 other downstream 568543 62899607 ~ 62926919 (-)
G1194521 NA other downstream 759649 62730954 ~ 62735710 (-)
G1195624 NA other upstream 435689 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 825306 64334669 ~ 64362841 (-)
G1195997 NA other upstream 967583 64476970 ~ 64477372 (-)
G1196113 NA other upstream 1285261 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 1442403 64951790 ~ 64963785 (-)

Expression


Co-expression Network