RNA id: XM_036941876.1


Basic Information

Item Value
RNA id XM_036941876.1
length 2291
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110485277
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63495359 ~ 63509387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCATCACTTccttggattcccctccagacctgtttaccctgtcccaacccagctcactccaacctcagcctccaTAACTGGTTTCCTACAACTCATCACTTccttggattcccctccagacctgtttaccctgtcccaacccagctcactccaacctcagcctccaTAACTGGTTTCCTACAACTCATCCAGGCTTTGCTGGATCTGCACTTCATCTCTAttaagcattaagaaggaaagaaattcaacagattaacctttaacaaggcacacctgttaattgaaattccagGAGGACGTGCAGGGATGAGACCCATGGACCACAGTGTGCTGAAATGTTGCCTCTTCTCCCTATTCTTGCTAACAGTATCTGCATCAGGCACTCTATCCAACTCAGCAGTTCCTACTATCCAACCACTATCTAATACAGCCAGTGCCTCCCAACCAGCCAACACAGCCACTTCATCCAGTGCAACGACACCCTCCTGTACAACACGTCGATGTCTGGCCAGCATGCTGATTGCGAAAGAAGCTCGGAGTCCGCCACAGTCTCCACGGTGCATCTCAATTATCCGTGTGCCGTCAATCGTGTACGAAACTCTGTCTGTCGATACAAAAAACCTCCGCTTCGAGAGTCGTCTGGAAGTCCCGCTGTCTTGGGAAGACCCTGATTTATCATGGAACACATCAGTCTATCATCATGATGTGGTGGTCCTGCCTGTCAGCAAAATCTGGACTCCTGAACTCCATGTGACTAATGGAGTGCAAACAACGATGAAGCACGGCAACAAGGATTTGCTGGTGCACAGCAACGGGACTATAGAGCACATGGTCATCATGAACACTGTGGTGGGCTGTGAGGTCAATCTGTACAACTACCCCTTCGCTTCAGATTTCTGTGCCATCGCCCTTAATGTGTGGGCAATTAGTGGATGTGGCATGTTCCTGGACTTTGGGAATGTGAGCAAAACTAGTGCAAACCGTGGGGACTGGCTAACCGAGGAGGTGGAACTCAATGCTAAAGGAGGCAGAGATGATCGCAactatctatggGTGTCGCTGAAAATGCGGTCTGAAAACCCGTTTCTGTCCCTGGTCCTGCCCAGTATACTAATCATCTTGGCTGATGTGGGCAGCTTCTCCCTGCCGCTGGGAGAGAGCAAGCGCATCCCCTTCAAGGTTAAACTGGTTCTCAGCTTCATCATGTTCCTCAACATCCTCAAGGACCTTCTGCCTGGAGGAGGCCAGTGCAGCCCCATCATCCGAAAGCACTTCTGTTTCTGTTTGGTCATCCTGGTGTTGAGCACGTTGCAGTCTATGGTGCTCACACGCCTGGCTAAGTGTGGCACTCTCTGGCCCTGCAGCCTCTCCAAGTCCAAAGACTCACTGCTTAAAGACACAGGCAATGAAGAGGCCTCAGAGGAAGAGAAGAATACAGCCCTCCAGAAGGTGGTGAAGTTTCTCAACAAAATGGCTGCACAAGACCACAAAAATGCTATACACCATCGCCTTGCCAACAAAGTGGACTTGATCTGTTTCTGTATCTATCTCACCGTCCTCATCGTTTATGCAGTCGtcattttatttttctcctttggtTCTCGATGTGAGATCAACCATTTAGAATTCTGGCATTAAATTCTTTATTTGCGTTTAACAATGATATGTAAATAAACATAAAGTATGTGTGTATTCTTCAGTAGAGATTTAACAATATTTATTTCAATATCTTTGAAACACCTCTGCATATCTATCCATTTTCCATTCTTCCTGTGCCATCCAAATTCCTGCATAGCCTACTGGTCAACGTACTGTAGTCAAAAATAATGCGAACGATGATGGTCAGCGATGAAGATGCGTCTAGCAACTTGCTGGTGCCGAGGCCCAGCATGATGACTCAATCACGATTTATGATATTGTCTGAATGACAGACCATCTGGGGGCTATTACAGGGGTCAAACACCTTATCTGTGGCAATCTCGATGAAAACACATTCCCATGGAAGTCCTGGGGGTCACTGACGCCAGGATAAGATGTAAAGACGGATGAAACTTGAATCGACTAAATGAATGTTACTGTGTGAATGAAATTGTCATGTTTGGATTATTTCAAGAGTTCATAAAGGGCTATGTATTTTTATATGTTTTATAATACTATGCTATGTATTTTTCTACGCTTTTAAGACTTAGGATATTCTATATTCTCTTTATCGTGAAGATTACTGGTATGTACCATTTGCTAATTGTATTCTTATTGCGTAACTGTAATAAATCGGATTACTTTCAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1363541 lncRNA downstream 6026 63488844 ~ 63489333 (-) True G1195075
TU1363536 lncRNA downstream 16794 63478162 ~ 63478565 (-) True G1195070
TU1363535 lncRNA downstream 22689 63471983 ~ 63472670 (-) True G1195069
TU1363526 lncRNA downstream 46049 63448870 ~ 63449310 (-) True LOC110487426
TU1363524 lncRNA downstream 51101 63443641 ~ 63444258 (-) True G1195058
TU1364069 lncRNA upstream 67726 63577113 ~ 63577337 (-) True G1195484
TU1364071 lncRNA upstream 71624 63581011 ~ 63581400 (-) True G1195486
TU1364072 lncRNA upstream 77743 63587130 ~ 63587640 (-) True G1195487
TU1364050 lncRNA upstream 91974 63601361 ~ 63606880 (-) True LOC110487439
TU1364074 lncRNA upstream 96519 63605906 ~ 63606545 (-) True G1195489
XM_021559360.2 mRNA downstream 33725 63448495 ~ 63461634 (-) False LOC110487426
XM_021556335.2 mRNA downstream 73861 63419349 ~ 63421498 (-) True LOC110485274
XM_036941868.1 mRNA downstream 96163 63369693 ~ 63399196 (-) False LOC110487424
XM_036941877.1 mRNA upstream 92350 63601737 ~ 63626291 (-) False LOC110487439
XM_036941878.1 mRNA upstream 118120 63627507 ~ 63633142 (-) True LOC110487455
XM_036941887.1 mRNA upstream 189860 63699247 ~ 63700715 (-) True trub1
XM_036941892.1 mRNA upstream 204995 63714382 ~ 63721873 (-) True LOC110487444
XR_005035641.1 mRNA upstream 230894 63740281 ~ 63756703 (-) False LOC118938350
TU1363356 other downstream 357637 63137040 ~ 63137722 (-) True G1194933
TU1363302 other downstream 413786 63072315 ~ 63081573 (-) True LOC110486089
TU1363300 other downstream 439998 63042006 ~ 63055361 (-) False LOC110486089
TU1363301 other downstream 439998 63042006 ~ 63055361 (-) False LOC110486089
TU1363034 other downstream 558286 62935786 ~ 62937073 (-) True G1194684
TU1364247 other upstream 435689 63945076 ~ 63945764 (-) True G1195624
TU1364356 other upstream 825306 64334693 ~ 64347407 (-) False LOC110487482
TU1364357 other upstream 825306 64334693 ~ 64347407 (-) False LOC110487482
TU1364358 other upstream 825306 64334693 ~ 64347086 (-) False LOC110487482
TU1364354 other upstream 836157 64345544 ~ 64347086 (-) False LOC110487482

Expression Profile