G1195487


Basic Information

Item Value
gene id G1195487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63587130 ~ 63587640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1364072
gcagaacggatgtactcaaggttcctatggtcagtccaaacgacaaaaggaacggtcgccccctccaaccactgtcgccattcgcctagggctaaccggatggcgagcagtttgcggttacccacatcatagttacgttccgacggcgacaggcgatgagaaaaatacgcgcatgggtggaccttgtcgtcagagagggagcgctgagaaagaatggctcccacgcccacctctgacgcgtcaacctcgacaacgaactgtctagagacgtcaggtgtaacaaggataggagcggatgtaaaacgattcttgaggagatcaaaagctccctgggcggaaacggaccacttaaagcacgtcttgacagaagtaagggctgtgagaggagctgccacctgaccgaaattacggatgaaacgacgatagaagttcgcgaagccgagaaagcgctgcagctcgacgcgtgacttagggacgggccaatcaatgacagcttggaccttagcgggac

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1364072 True 511 lncRNA 0.55 1 63587130 63587640

Neighbor

gene id symbol gene type direction distance location
LOC110485277 LOC106602060 coding downstream 77743 63495359 ~ 63509387 (-)
LOC110487426 LOC106606390 coding downstream 125496 63448495 ~ 63461634 (-)
LOC110485274 LOC106606392 coding downstream 165632 63419349 ~ 63421498 (-)
LOC110487424 otop2 coding downstream 187933 63369692 ~ 63399197 (-)
LOC110487088 otop2 coding downstream 225348 63356485 ~ 63361782 (-)
LOC110487439 mkk6a coding upstream 14097 63601361 ~ 63626291 (-)
LOC110487455 LOC106601935 coding upstream 39867 63627507 ~ 63633142 (-)
trub1 trub1 coding upstream 111607 63699247 ~ 63700715 (-)
LOC110487444 LOC106601894 coding upstream 126742 63714382 ~ 63721873 (-)
LOC118938350 NA coding upstream 152641 63740281 ~ 63763190 (-)
G1195486 NA non-coding downstream 5730 63581011 ~ 63581400 (-)
G1195484 NA non-coding downstream 9793 63577113 ~ 63577337 (-)
G1195075 NA non-coding downstream 97797 63488844 ~ 63489333 (-)
G1195070 NA non-coding downstream 108565 63478162 ~ 63478565 (-)
G1195069 LOC106606397 non-coding downstream 114460 63471983 ~ 63472670 (-)
G1195489 NA non-coding upstream 18266 63605906 ~ 63606545 (-)
G1195490 NA non-coding upstream 26562 63614202 ~ 63614450 (-)
G1195494 NA non-coding upstream 32929 63620569 ~ 63620868 (-)
G1195496 NA non-coding upstream 36840 63624480 ~ 63624747 (-)
G1194933 NA other downstream 449408 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 505557 63032412 ~ 63218815 (-)
G1194684 NA other downstream 650057 62935786 ~ 62937073 (-)
LOC118938348 LOC106606427 other downstream 660314 62899607 ~ 62926919 (-)
G1195624 NA other upstream 357436 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 747053 64334669 ~ 64362841 (-)
G1195997 NA other upstream 889330 64476970 ~ 64477372 (-)
G1196113 NA other upstream 1207008 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 1364150 64951790 ~ 64963785 (-)

Expression


Co-expression Network