LOC118938350


Basic Information

Item Value
gene id LOC118938350
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63740281 ~ 63763190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035641.1
ACACTCGCTTTTCAAAACCCATCAACAAAGTGACTGTCAGTACTGACTACACATTAGCTTGTAGATAGTTATCTTAGCTTTCTACTGTATCGATGGATTCCAAGGAGAGTGAAATCGCTAGATGTTTAAATAGTAATGATGTTGAGCTGGTTCAGTCGATCGGTGGCGTCAATTTATTGGCTACTACTTTTTTACCTGAGCCGGAGCACCAATGTCGAGACCGAGCCCCGCCTTGGGAGGCAACCGATGAAGACCACACGTCAATTATTGTGCTTCAGTGAGTCGAGGTGAAATATGTCAGTGATGCTGTGCAACAAATTGAAAATGCTTGCATGGTCAGGTGCACTTGCAAGTCCAACGAAGGGTAGCCCTGCTATTTGCTTTTTACCCCAAAGGAGATGAGACGTGACAAGATGAATTAACTCACCAATGGTACTATGAAAAACACATCTAGTGCTCATTGGACAGATCACTGGTTCCATGAACCTCTCCAAGGAAACTGTCATCTCAAAGGAGCAAACAAGCAGAAAGGAGACATCAGATGATGTCCTATTTCCTTGATCGCCAGCAGATCTGAAGACTCATAAGTTCTTTAGAGTAATACAACTTGATGTTTTCTGTTATTTTGGGGCTGCAACAGTATTAAAAGTGCTTCCCAAACTGTTTGCGTTGCCCTTCTGCTATAGGACAACACCCATGACGTATTTATTTATTCCAAACATCTGTCAGCACAAAGATTCAAGTCACTACCAGCCATCAGGATTTAAAACTGCTTTCAGAGGGCATAACCACCTCAAACTTGCTTTCAAAATAAACAATTTGCAACAGAAACTGAACGTCTGTTCAGGAAGTCATATCTAGGCTACTTCCCCATTTCACATTACAAAACATTTCCCAATTACTGAACTATGCAATGAGCTATGAAATGCACACACACCATTCAAATTATTGTAAAAGTGCCATCATCCATTCTCCCTTCATTTAAGTAGCCTAATCACTCATTTGAATTGACTGTAGAAGTGAAAGCCAAGGAGCCCTTTTGTTGACCTGTCCAATCAGTGATTCAAGgaatggaggagggatggatgcaCATAAGGAATAAGAATGGGGCTGAAATACCCAATCCTAGTCTTCAAAGAAGAAGATATCAAATCTCATTTTCACATACAGAAAAGTAGATTTGCCCCAGACAAATgacgcagcccccccccccccaccccccccccccagcagagAACACCTTAAAGACCTTGAGTCCACGCAGGTAGACCTATTCATTACTGTGAGTATGAACATTCATAGCTGTGGAGACCAAGTCATTCAATGAGTTAATCACAGATGTACACAATGTCACACAGCAATAGGAATAACATTTTTACTATTAAAATGAAATATTCATTTGGCCATTATTCAGTTTTATTATTCATTTTGAATATATAATACAGTTTATCATAGATTAACACAGGGTTACATACACTGATAGATTATACTGAGATTAACACAGGGGTACATGCAATGTAAGTAATTCTACATTAcgataataaaaaatacatttgatttgtaacACGCTTTTCAAAAACTCAAGATgctacaataaataaataaaatcctcaAAGCAGTGTACAACACATAATCAAGACAATCCAGAGACTTCTAATACTCTGGGATATAAAGATATCAGTCTGGTAAAATGTAGCGTTACTAGTAATACAATAAGGTTGTTGAGATTAAGAAGTTTACTATAGTGACACTAGTAGAGACACTGAACTACAGTCAATATGTATAGACATGATGTCATTATAAAAGGAGGGCTTTTTACTAGGGCTGGGCTGTATACCGTTTTTTGCGATATACCAGTATTGATGCATGGACCAGtttggtttttactttaccttctataccggtatttgaatgtttggtttgttaaatgtgatacgcagtgtgtaacgtccatttttatagtttacttctCTACTGGAGTCATCTCTCTCCACTCGCCCTATGTCGCTTTCCACACCGACCTAGccacgccccctgtcactcaaggagagcATTTGATGTTCCTCAACCACGAGACACTTGAGTTCattctgcatggtcaatgcaacATACATCAATGCACAACTGTTGATGACAACGATGCAGTtgtcactttgcttcttaatattaATCTActagcgttctataattacacaATTAGCTTGTGTTTCTTACATATGCAAACAGATAGTTAGACGCtaatcgctagctagctaataaatgtactgagtaagaGCAAGCGTAATTAGCTATACatcctgataataccagtgatagTGTAGACCTAAATTAGCATGTTGTTTGCACAACAGTCTTCTAAATTAAAGAGGTAAACACAAAgcaagaatatgttagctacatgaagtaaagattatagggtcccctaggaaacacccATCAACACAttagttcctaccctgtcacaat
>TU1364154
AACAAATCAGCCTACTTAAGTGTTAATAACAATAAAAATCTAGACATAATACTTGGAAATATTTAGGCTACTTTTCATTACATTTTCTATTCTTGgaaatgtttgtttattttagTGCTGCATTGCCTATTTCATTGCCTATACTACAGGAATAAATCCCctacaaaaaatatagttttGTTACTTCCCTCACATTCGGATCATAGAAGGAGAAACTTTGCCTACCCAATCATTCCTGTTTGACATGCAGATAGGCTActtcagaaatacagtgccttgcgaaagtattcggcccccccccccccccccacccccc
>TU1364151
GAGACCGAGCCCCGCCTTGGGAGGCAACCGATGAAGACCACACGTCAATTATTGTGCTTCAGTGAGTCGAGGTGAAATATGTCAGTGATGCTGTGCAACAAATTGAAAATGCTTGCATGGTCAGGTGCACTTGCAAGTCCAACGAAGGGTAGCCCTGCTATTTGCTTTTTACCCCAAAGGAGATGAGACGTGACAAGATGAATTAACTCACCAATGATGAAAAACACATCTAGTGCTCATTGGACAGATCACTGGTTCCATGAACCTCTCCAAGGAAACTGTCATCTCAAAGGAGCAAACAAGCAGAAAGGAGACATCAGATGATGTCCTATTTCCTTGTTTAGAGTAATACAACTTGATGTTTTCTGTTATTTTGGGGCTGCAACAGTATTAAAAGTGCTTCCCAAACTGTTTGCGTTGCCCTTCTGCTATAGGACAACACCCATGACGTATTTATTTATTCCAAACATCTGTCAGCACAAAGATTCAAGTCACTACCAGCCATCAGGATTTAAAACTGCTTTCAGAGGGCATAACCACCTCAAACTTGCTTTCAAAATAAACAATTTGCAACAGAAACTGAACGTCTGTTCAGGAAGTCATATCTAGGCTACTTCCCCATTTCACATTACAAAACATTTCCCAATTACTGAACTATGCAATGAGCTATGAAATGCACACACACCATTCAAATTATTGTAAAAGTGCCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035641.1 False 2466 mRNA 0.39 2 63740281 63756703
TU1364154 False 316 lncRNA 0.38 2 63741525 63763190
TU1364151 True 713 lncRNA 0.41 3 63741782 63756487

Neighbor

gene id symbol gene type direction distance location
LOC110487444 LOC106601894 coding downstream 18408 63714382 ~ 63721873 (-)
trub1 trub1 coding downstream 39566 63699247 ~ 63700715 (-)
LOC110487455 LOC106601935 coding downstream 107139 63627507 ~ 63633142 (-)
LOC110487439 mkk6a coding downstream 113990 63601361 ~ 63626291 (-)
LOC110485277 LOC106602060 coding downstream 230894 63495359 ~ 63509387 (-)
LOC110487429 LOC106601877 coding upstream 41550 63798253 ~ 63812083 (-)
LOC110487446 LOC106606413 coding upstream 63521 63820224 ~ 63825369 (-)
LOC110487454 gys1 coding upstream 81691 63838394 ~ 63863342 (-)
LOC118936516 LOC106606377 coding upstream 155786 63912489 ~ 63951876 (-)
LOC110487030 p-ras coding upstream 205773 63962476 ~ 63970472 (-)
G1195525 NA non-coding downstream 26018 63711246 ~ 63714263 (-)
G1195514 LOC106606343 non-coding downstream 44541 63680056 ~ 63695740 (-)
G1195512 LOC106606343 non-coding downstream 46948 63676957 ~ 63693333 (-)
G1195499 NA non-coding downstream 100635 63638966 ~ 63639646 (-)
G1195496 NA non-coding downstream 115534 63624480 ~ 63624747 (-)
G1195562 NA non-coding upstream 26813 63783516 ~ 63786090 (-)
G1195569 NA non-coding upstream 70363 63827066 ~ 63827277 (-)
G1195574 NA non-coding upstream 94439 63851142 ~ 63852383 (-)
G1195589 LOC106606382 non-coding upstream 130726 63887429 ~ 63891370 (-)
G1194933 NA other downstream 602559 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 658708 63032412 ~ 63218815 (-)
G1194684 NA other downstream 803208 62935786 ~ 62937073 (-)
LOC118938348 LOC106606427 other downstream 813465 62899607 ~ 62926919 (-)
G1195624 NA other upstream 188373 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 577990 64334669 ~ 64362841 (-)
G1195997 NA other upstream 720267 64476970 ~ 64477372 (-)
G1196113 NA other upstream 1037945 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 1195087 64951790 ~ 64963785 (-)

Expression


Co-expression Network