LOC110487429 (LOC106601877)


Basic Information

Item Value
gene id LOC110487429
gene name LOC106601877
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63798253 ~ 63812083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941902.1
ATAACCCACAGacgaagaagaaaaagaaacggtCACCATGTAATGACGTCACTTTCATCCGCTTGTCAGTCCAAGATGGCGGCGCTCGTTGGGCTTCGTGCATGTTTCTCTGCCCTTCAGCTTTCCTCACCGGGTCTTCTGCACAGCTCCTATAAACTGTGTGCAGTGCCATTTACTCGGCGGAACTTTGCAGCAGAGGCCAAGGCCAAGAAAACATACGCAAGAGACAAGCCCCATGTGAACATTGGCACGATTGGCCATGTTGACCATGGCAAGACAACTCTAACGGCTGCCATCACCAAAGTGCTGGCTGAGGCTGGAGGCGCCCGCTATAAGAAGTATGAGGACATTGACAATGCCCCTGAGGAGAAGGCCAGGGGCATCACCATCAATGCATCCCATGTAGAGTACACCACAGCCAACAGACACTATGCACACACAGACTGCCCGGGCCATGCTGACTACGTCAAGAACATGATCACAGGCACGGCTCAGCTGGACGGCTGCATCCTGGTGGTGGCGGCCACGGACGGACAGATGCCCCAGACCAGGGAGCACCTCCTGCTGGCCCGGCAGATCGGCGTGGAGCACGTGGTGGTGTTTGTGAACAAGGCGGATGCGGTGGAGGACAAGGAGATGCTGGAGCTGGTTGAGCTGGAGATCAGAGAGCTGCTCACAGAGTTTGGCTACGACGGTGAGAACACGCCCGTCGTCATCGGCTCGGCCCTCTGTGCCCTGGAGAACAAACAGCCTGACCTGGGGGTGAACGCAGTGCTGAAGCTCCTAGCAGTAGTGGATGAATACGTCCCTCTGCCCAAGAGAGAGCTGGAGAAACCCTTCCTGCTGCCCATCGAGGGAGTCTACTCCATCCCAGGCAGGGGTACGGTGGTGACTGGCACTTTGGAGAGGGGTGTCATTAAGAAGGGCGACGACTGTGAGTTTGTGGGGCACAACCGTGCCTTTAAGTCTGTGGTCACTGgcATTGAGATGTTCCACCAGTCTCTGGACAGAGCAGAGGCAGGAGATAACCTGGGGGCTCTGGTCCGAGGGCTGAAGAGGGAGGACATTAGGAGAGGGATGGTTATGAGCAAACCAGGCTCCATCCAGCCCCACCAGaaagtccaggcccagGTCTATGTTCtgagtaaggaggagggaggcagaCACAAGCCCTTTGTCAGTAACTTCATGCCAGTCATGTTCTCCCTCACCTGGGACATGGCCTGCAGGGTCTACCTGGCAGGAGACAAGGACATGGTGATGCCAGGTGAAGACACATCTCTGACCCTCACGCTGCGCCAGCCTATGATTCTGGAGAAAGGTCAACGGTTCACTCTCAGAGATGGCAACAAAACTATTGGCACCGGCCTGGTTACTGACATACTGACCACCACAGAGGAAGACCAACACAACTGGGGCTgaggagagaaaataaaatatgggagggaagggagggggacTAATggtgggggaAGGAAGCATCTAGCTGTCCAATATTATCGgtctttagacacacacacagcagtaaggAGCTGCTCAGACTGCATGTCTCTCTGCTTTACTGACCAACCAGAAGACCCACAATGAGATGTTCATAGTTGTCTTTCTGTGAAAAGGCCAGACTGTCATTGTCCTCTTGtgtaataaaatgtatttaatagtaAAACAGTC
>TU1364170
ggaagggggactAATGGTGGGGGAGGAAGCATCTAGCTGTCCAATATTATCGgtctttagacacacacacagcagtaaggAGCTGCTCAGACTGCATGTCTCTCTGCTTTACTGACCAACCAGAAGACCCACAATGAGATGTTCATAGTTGTCTTTCTGTGAAAAGGCCAGACTGTCATTGTCCTCTTGtgtaataaaatgtatttaatagtaAAACAGTC

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941902.1 False 1671 mRNA 0.54 11 63798253 63812083
TU1364170 True 221 lncRNA 0.43 1 63798253 63798473

Neighbor

gene id symbol gene type direction distance location
LOC118938350 NA coding downstream 41550 63740281 ~ 63763190 (-)
LOC110487444 LOC106601894 coding downstream 76380 63714382 ~ 63721873 (-)
trub1 trub1 coding downstream 97538 63699247 ~ 63700715 (-)
LOC110487455 LOC106601935 coding downstream 165111 63627507 ~ 63633142 (-)
LOC110487439 mkk6a coding downstream 171962 63601361 ~ 63626291 (-)
LOC110487446 LOC106606413 coding upstream 8141 63820224 ~ 63825369 (-)
LOC110487454 gys1 coding upstream 26311 63838394 ~ 63863342 (-)
LOC118936516 LOC106606377 coding upstream 100406 63912489 ~ 63951876 (-)
LOC110487030 p-ras coding upstream 150393 63962476 ~ 63970472 (-)
LOC110487029 LOC105029052 coding upstream 161197 63973280 ~ 64040299 (-)
G1195529 NA non-coding downstream 7606 63736375 ~ 63790647 (-)
G1195562 NA non-coding downstream 12163 63783516 ~ 63786090 (-)
G1195554 NA non-coding downstream 42508 63748413 ~ 63755745 (-)
G1195555 NA non-coding downstream 51763 63742946 ~ 63746490 (-)
G1195569 NA non-coding upstream 14983 63827066 ~ 63827277 (-)
G1195574 NA non-coding upstream 39059 63851142 ~ 63852383 (-)
G1195589 LOC106606382 non-coding upstream 75346 63887429 ~ 63891370 (-)
G1195590 NA non-coding upstream 79442 63891525 ~ 63892705 (-)
G1195593 NA non-coding upstream 81330 63893413 ~ 63893903 (-)
LOC110485277 LOC106602060 other downstream 292729 63495359 ~ 63509387 (-)
G1194933 NA other downstream 660531 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 716680 63032412 ~ 63218815 (-)
G1194684 NA other downstream 861180 62935786 ~ 62937073 (-)
LOC118938348 LOC106606427 other downstream 871437 62899607 ~ 62926919 (-)
G1195624 NA other upstream 132993 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 522610 64334669 ~ 64362841 (-)
G1195997 NA other upstream 664887 64476970 ~ 64477372 (-)
G1196113 NA other upstream 982565 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 1139707 64951790 ~ 64963785 (-)

Expression


Co-expression Network