G1195529


Basic Information

Item Value
gene id G1195529
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63736375 ~ 63790647 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1364128
ATCTGATgtatttcttcaggtcaaacacaTCCAGCTTCTCGGAGGTCAGCAACATGAagaccagagctgaccactgtCCAGATGAGAGTTTAGATTTTGAGAGACTTCCTGATCTCAGGTAGCTTTGGATCTCCTCCTCTAGAGAATGatcattcagttcattcagacagtggaacagattgatACACCTCTCCAGGGGGAGGTTCTTTCTGATCTTCTCCTTGATGTACTTGACTGTTTTCTTGTTGCTCTGTGATCTGCTTCCTGTCTGTGTCAGTAGGCCTTGTAGGAGATGCTGATTGGACTCATGTGAAAGGCCTagaaggaagcggaggaaaagGTCCAGATGGCCATTTTCAAACTGCAAGGCCTTGTCCACTGCATCTTGGTATAGTTTGTTTTTGCGGAGGGATCTCTCTTTAGCCATcagattgttgttgttgttagtgaACATGAGGAACACATATAGTGCAGCCAGAAACTCCTGGATACTCAGATGTACAAAGCAGTACACCTTCATCTGGTTAAGCCCAGACTCTTCTCTGAAGATCTGAGTGCACACTCCAGAGTACACAGACGCATCCTTGATGTCAATGCCACACTCTCTCAGGTCTTCCTCATAGAATATCAGATGGCCTTTTTCTAGCTGTTGAAAAGCCAGCTTTCCCAGTGCCAGAATCATCTCTTTATCCCAGTGAGAATCATTGGCATGCTCTACAGGATACTTCTGACTCCTCTGTTTTGAATGGAAGATCATGAGGTGAGCGTACATTTGAGTAAGATTCTTGGGGATCTCTTGACTCTCTGCTTCAACCAATAGTCTCTCTAGGACAGTGGCTGAAATCCAACAGAAGACGggaatgtggcacatgatgtggaggctccttgacgtctttatgtgtgagatgattctgCTGGCCAAGTCCTCCTCAGAGATTCTCTTCCTGAAGTATTCCTCCTTCTGTAGGtcattgaaccctcgtacctctgtcacctggtcaacacacTCAGGAGGGATCTGATTGGCTGCTGCAGGTCGGGTGGTTATCCAAATGTgagcagagggaagcagattCCCTTCGATGAGGTTTGTCAGCAGAACATCCACTGAAGTtgactctgtgacatcacagcagatcTTATTATTCTGGAAGTCCAGAGGAAGGCGACATTCATCCAGACCATCAAAAACAAACACAATATTTTTGTTTTCTGAGATTT

Function

NR:

description
uncharacterized protein LOC110487416 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1364128 True 1221 lncRNA 0.45 2 63736375 63790647

Neighbor

gene id symbol gene type direction distance location
LOC110487444 LOC106601894 coding downstream 14502 63714382 ~ 63721873 (-)
trub1 trub1 coding downstream 35660 63699247 ~ 63700715 (-)
LOC110487455 LOC106601935 coding downstream 103233 63627507 ~ 63633142 (-)
LOC110487439 mkk6a coding downstream 110084 63601361 ~ 63626291 (-)
LOC110485277 LOC106602060 coding downstream 226988 63495359 ~ 63509387 (-)
LOC110487429 LOC106601877 coding upstream 7606 63798253 ~ 63812083 (-)
LOC110487446 LOC106606413 coding upstream 29577 63820224 ~ 63825369 (-)
LOC110487454 gys1 coding upstream 47747 63838394 ~ 63863342 (-)
LOC118936516 LOC106606377 coding upstream 121842 63912489 ~ 63951876 (-)
LOC110487030 p-ras coding upstream 171829 63962476 ~ 63970472 (-)
G1195525 NA non-coding downstream 22112 63711246 ~ 63714263 (-)
G1195514 LOC106606343 non-coding downstream 40635 63680056 ~ 63695740 (-)
G1195512 LOC106606343 non-coding downstream 43042 63676957 ~ 63693333 (-)
G1195499 NA non-coding downstream 96729 63638966 ~ 63639646 (-)
G1195496 NA non-coding downstream 111628 63624480 ~ 63624747 (-)
G1195569 NA non-coding upstream 36419 63827066 ~ 63827277 (-)
G1195574 NA non-coding upstream 60495 63851142 ~ 63852383 (-)
G1195589 LOC106606382 non-coding upstream 96782 63887429 ~ 63891370 (-)
G1195590 NA non-coding upstream 100878 63891525 ~ 63892705 (-)
G1194933 NA other downstream 598653 63137040 ~ 63137722 (-)
LOC110486089 LOC106606381 other downstream 654802 63032412 ~ 63218815 (-)
G1194684 NA other downstream 799302 62935786 ~ 62937073 (-)
LOC118938348 LOC106606427 other downstream 809559 62899607 ~ 62926919 (-)
G1195624 NA other upstream 154429 63945076 ~ 63945764 (-)
LOC110487482 LOC106606373 other upstream 544046 64334669 ~ 64362841 (-)
G1195997 NA other upstream 686323 64476970 ~ 64477372 (-)
G1196113 NA other upstream 1004001 64794648 ~ 64795071 (-)
G1196205 LOC106606311 other upstream 1161143 64951790 ~ 64963785 (-)

Expression


Co-expression Network